Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g08224 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 2046.9 1083 100.0
BolC4t27237H Brassica oleracea HOM05D004020 ORTHO05D004735 0.0e+00 2011.1 1084 98.8
C04p57020 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 2001.9 1084 98.6
BraA04t17688Z Brassica rapa HOM05D004020 ORTHO05D004735 0.0e+00 1947.2 1085 94.0
A04p21190 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1921.7 1085 93.3
BcaB06g28175 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1822.4 1086 89.8
Sp4g10720 Schrenkiella parvula HOM05D004020 ORTHO05D004735 0.0e+00 1803.5 1085 87.5
BcaB01g03084 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1784.6 1089 87.1
AT2G27900 Arabidopsis thaliana HOM05D004020 ORTHO05D004735 0.0e+00 1783.1 1082 86.3
Carub.0004s0864 Capsella rubella HOM05D004020 ORTHO05D004735 0.0e+00 1775.8 1089 86.2
AL4G22350 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 0.0e+00 1770.0 1082 86.1
A03p26460 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1769.2 1090 86.6
Thhalv10016162m.g Eutrema salsugineum HOM05D004020 ORTHO05D004735 0.0e+00 1767.3 1088 85.9
BcaC01g04955 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1760.3 1089 86.1
BolC3t15517H Brassica oleracea HOM05D004020 ORTHO05D004735 0.0e+00 1749.6 1095 85.7
C03p31750 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1749.2 1091 86.1
Aa31LG5G8160 Aethionema arabicum HOM05D004020 ORTHO05D004735 0.0e+00 1726.5 1086 83.9
THA.LOC104826398 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 0.0e+00 1573.9 1086 77.6
THA.LOC104800567 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 0.0e+00 1532.7 1090 75.0
CARHR120590 Cardamine hirsuta HOM05D004020 ORTHO05D004735 0.0e+00 1521.1 939 84.0
Thecc.09G295800 Theobroma cacao HOM05D004020 ORTHO05D004735 0.0e+00 1347.4 1080 67.1
Manes.11G154000 Manihot esculenta HOM05D004020 ORTHO05D004735 0.0e+00 1321.6 1096 64.6
Lj3g0000902 Lotus japonicus HOM05D004020 ORTHO05D004735 0.0e+00 1319.7 1093 64.5
Atru.chr3.3492 Acer truncatum HOM05D004020 ORTHO05D004735 0.0e+00 1319.3 1122 64.6
Glyma.11G191100 Glycine max HOM05D004020 ORTHO05D004735 0.0e+00 1317.0 1090 64.8
Cfa010130 Carpinus fangiana HOM05D004020 ORTHO05D004735 0.0e+00 1313.5 1102 64.4
Glyma.12G083200 Glycine max HOM05D004020 ORTHO05D004735 0.0e+00 1312.7 1094 64.5
Medtr4g056510 Medicago truncatula HOM05D004020 ORTHO05D004735 0.0e+00 1310.8 1092 64.7
Sabra04G0148500 Salix brachista HOM05D004020 ORTHO05D004735 0.0e+00 1308.5 1080 65.3
Ca_19329_v3 Cicer arietinum L. HOM05D004020 ORTHO05D004735 0.0e+00 1305.0 1091 63.5
Gorai.009G089000 Gossypium raimondii HOM05D004020 ORTHO05D004735 0.0e+00 1303.5 1082 65.5
CSS0033419 Camellia sinensis var. sinensis HOM05D004020 ORTHO05D004735 0.0e+00 1303.1 1098 63.8
TAR633G0695 Trochodendron aralioides HOM05D004020 ORTHO05D004735 0.0e+00 1302.7 1107 63.1
Psat7g191400 Pisum sativum HOM05D004020 ORTHO05D004735 0.0e+00 1298.1 1091 63.5
Duzib168G0446 Durio zibethinus HOM05D004020 ORTHO05D004735 0.0e+00 1297.7 1081 65.2
TWI75G0197 Tripterygium wilfordii HOM05D004020 ORTHO05D004735 0.0e+00 1296.6 1100 63.8
Lalb_Chr19g0136831 Lupinus albus HOM05D004020 ORTHO05D004735 0.0e+00 1295.0 1093 64.5
CiPaw.14G105600 Carya illinoinensis HOM05D004020 ORTHO05D004735 0.0e+00 1294.3 1099 63.4
Ciclev10027713m.g Citrus clementina HOM05D004020 ORTHO05D004735 0.0e+00 1294.3 1097 64.8
Lalb_Chr01g0004661 Lupinus albus HOM05D004020 ORTHO05D004735 0.0e+00 1290.4 1089 63.7
Potri.009G002900 Populus trichocarpa HOM05D004020 ORTHO05D004735 0.0e+00 1289.6 1083 64.5
COL.COLO4_19229 Corchorus olitorius HOM05D004020 ORTHO05D004735 0.0e+00 1289.2 1087 64.1
Gohir.D07G110000 Gossypium hirsutum HOM05D004020 ORTHO05D004735 0.0e+00 1287.7 1086 64.9
Potri.001G212600 Populus trichocarpa HOM05D004020 ORTHO05D004735 0.0e+00 1285.4 1089 64.4
Actinidia07194 Actinidia chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1284.2 1100 62.9
TPR.G35043 Trifolium pratense HOM05D004020 ORTHO05D004735 0.0e+00 1283.9 1091 63.2
MD11G1151500 Malus domestica HOM05D004020 ORTHO05D004735 0.0e+00 1279.6 1100 63.6
Actinidia24157 Actinidia chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1277.7 1097 62.6
RcHm_v2.0_Chr5g0056331 Rosa chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1275.0 1096 63.8
Rhsim13G0102300 Rhododendron simsii HOM05D004020 ORTHO05D004735 0.0e+00 1272.7 1126 61.5
FvH4_3g30380 Fragaria vesca HOM05D004020 ORTHO05D004735 0.0e+00 1271.1 1094 63.6
MD03G1129700 Malus domestica HOM05D004020 ORTHO05D004735 0.0e+00 1271.1 1098 63.8
FAN21G0469 Fragaria x ananassa HOM05D004020 ORTHO05D004735 0.0e+00 1268.1 1089 63.7
Gohir.D05G087200 Gossypium hirsutum HOM05D004020 ORTHO05D004735 0.0e+00 1265.8 1082 64.0
Prupe.6G114700 Prunus persica HOM05D004020 ORTHO05D004735 0.0e+00 1263.1 1103 62.5
Phvul.011G088000 Phaseolus vulgaris HOM05D004020 ORTHO05D004735 0.0e+00 1259.6 1088 62.9
Gohir.A05G084400 Gossypium hirsutum HOM05D004020 ORTHO05D004735 0.0e+00 1258.0 1096 63.2
MELO3C004814.2 Cucumis melo HOM05D004020 ORTHO05D004735 0.0e+00 1253.8 1084 62.3
CsaV3_1G014440 Cucumis sativus L. HOM05D004020 ORTHO05D004735 0.0e+00 1252.7 1084 62.5
Duzib150G0506 Durio zibethinus HOM05D004020 ORTHO05D004735 0.0e+00 1250.0 1081 63.5
FAN11G1674 Fragaria x ananassa HOM05D004020 ORTHO05D004735 0.0e+00 1249.2 1117 62.2
Sed0021294 Sechium edule HOM05D004020 ORTHO05D004735 0.0e+00 1249.2 1081 62.8
Nn2g13902 Nelumbo nucifera HOM05D004020 ORTHO05D004735 0.0e+00 1247.3 1108 61.7
PGR102G0426 Punica granatum HOM05D004020 ORTHO05D004735 0.0e+00 1229.2 1080 62.4
GSVIVG01031444001 Vitis vinifera HOM05D004020 ORTHO05D004735 0.0e+00 1224.2 1086 61.8
Sopen11g026290 Solanum pennellii HOM05D004020 ORTHO05D004735 0.0e+00 1209.5 1080 60.5
Cc01_g10110 Coffea canephora HOM05D004020 ORTHO05D004735 0.0e+00 1205.7 1102 59.9
Aqoxy2G01562 Aquilegia oxysepala HOM05D004020 ORTHO05D004735 0.0e+00 1203.0 1111 59.9
CAN.G644.49 Capsicum annuum HOM05D004020 ORTHO05D004735 0.0e+00 1202.6 1083 60.9
PSO801G0568 Papaver somniferum HOM05D004020 ORTHO05D004735 0.0e+00 1198.3 1104 59.2
Sc06g0008980 Simmondsia chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1198.3 1063 61.8
vmacro03245 Vaccinium macrocarpon HOM05D004020 ORTHO05D004735 0.0e+00 1197.6 1120 58.7
PSO339G0247 Papaver somniferum HOM05D004020 ORTHO05D004735 0.0e+00 1196.8 1103 59.2
HanXRQChr14g0451831 Helianthus annuus HOM05D004020 ORTHO05D004735 0.0e+00 1187.2 1083 59.9
Nitab4.5_0000173g0340 Nicotiana tabacum HOM05D004020 ORTHO05D004735 0.0e+00 1181.8 1119 58.6
arahy.Tifrunner.gnm1.ann1.MMVL4X Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1180.6 1098 59.4
arahy.Tifrunner.gnm1.ann1.533Y7U Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1176.0 1107 58.8
EL10Ac9g20998 Beta vulgaris HOM05D004020 ORTHO05D004735 0.0e+00 1171.4 1123 58.2
MSTRG.18711 Avicennia marina HOM05D004020 ORTHO05D004735 0.0e+00 1168.3 1096 58.9
ECA238G2607 Erigeron canadensis HOM05D004020 ORTHO05D004735 0.0e+00 1167.5 1081 58.7
AL4G12830 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 0.0e+00 1151.3 896 73.7
Migut.D02305 Erythranthe guttata HOM05D004020 ORTHO05D004735 0.0e+00 1149.8 1092 59.2
BraA03t11860Z Brassica rapa HOM05D004020 ORTHO05D004735 0.0e+00 1146.3 737 84.9
HanXRQChr02g0055251 Helianthus annuus HOM05D004020 ORTHO05D004735 0.0e+00 1139.8 1107 57.4
Lsat_1_v5_gn_6_42101 Lactuca sativa HOM05D004020 ORTHO05D004735 0.0e+00 1139.4 1096 57.5
CDE08G1223 Ceratophyllum demersum HOM05D004020 ORTHO05D004735 0.0e+00 1125.9 1093 57.5
arahy.Tifrunner.gnm1.ann1.B084HG Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1116.7 933 62.9
arahy.Tifrunner.gnm1.ann1.PN7A9Z Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1114.4 932 62.8
ATR1158G033 Amborella trichopoda HOM05D004020 ORTHO05D004735 0.0e+00 1079.3 1085 55.3
Eucgr.B03912 Eucalyptus grandis HOM05D004020 ORTHO05D004735 9.6e-310 1067.0 973 62.1
Lsat_1_v5_gn_2_99000 Lactuca sativa HOM05D004020 ORTHO05D004735 2.4e-305 1052.4 1086 56.2
Oeu007301.5 Olea europaea HOM05D004020 ORTHO05D004735 5.4e-305 1051.2 1257 49.8
Os10g0546300 Oryza sativa ssp. japonica HOM05D004020 ORTHO05D004735 1.5e-299 1033.1 1088 53.1
Zm00001eb022740 Zea mays HOM05D004020 ORTHO05D004735 1.6e-296 1023.1 1090 53.2
Hund07762 Selenicereus undatus HOM05D004020 ORTHO05D004735 1.1e-294 1016.9 1063 54.1
SGA_v2.0_scaffold27G11582 Striga asiatica HOM05D004020 ORTHO05D004735 6.9e-292 1007.7 1331 47.6
MBI18_g10967_MAGBIO Magnolia biondii HOM05D004020 ORTHO05D004735 4.9e-282 974.9 1109 51.2
AUR62024038 Chenopodium quinoa HOM05D004020 ORTHO05D004735 7.1e-281 971.1 1086 52.9
CANSAT64G0934 Cannabis sativa HOM05D004020 ORTHO05D004735 2.5e-273 946.0 990 55.3
ClCG01G012850 Citrullus lanatus HOM05D004020 ORTHO05D004735 1.3e-269 933.7 917 57.9
DCAR_031639 Daucus carota HOM05D004020 ORTHO05D004735 5.3e-260 901.7 935 54.9
Hund00854 Selenicereus undatus HOM05D004020 ORTHO05D004735 7.0e-252 874.8 983 53.4
AUR62041305 Chenopodium quinoa HOM05D004020 ORTHO05D004735 2.2e-245 853.2 1046 50.0
Peaxi162Scf00150g00916 Petunia axillaris HOM05D004020 ORTHO05D004735 6.3e-237 825.1 849 56.3
Mapoly0001s0255 Marchantia polymorpha HOM05D004020 ORTHO05D004735 4.3e-217 759.2 1157 39.8
Pp3c16_8720 Physcomitrium patens HOM05D004020 ORTHO05D004735 2.4e-212 743.4 1102 40.9
SMO118G0476 Selaginella moellendorffii HOM05D004020 ORTHO05D004735 4.6e-211 739.2 1102 40.3
Pp3c5_16860 Physcomitrium patens HOM05D004020 ORTHO05D004735 6.6e-210 735.3 1137 41.0
AagrBONN_evm.TU.Sc2ySwM_340.402 Anthoceros agrestis HOM05D004020 ORTHO05D004735 1.3e-205 721.1 1145 38.7
Oeu008367.3 Olea europaea HOM05D004020 ORTHO05D004735 2.3e-199 700.3 891 50.3
Ah.01g015940 Amaranthus hybridus HOM05D004020 ORTHO05D004735 3.8e-197 693.0 706 55.1
Lj2C1000T5 Lonicera japonica HOM05D004020 ORTHO05D004735 3.2e-188 663.3 798 51.0
AagrBONN_evm.TU.Sc2ySwM_117.107 Anthoceros agrestis HOM05D004020 ORTHO05D004735 2.4e-183 647.1 1057 36.9
Dinv12567 Davidia involucrata HOM05D004020 ORTHO05D004735 9.6e-177 625.2 955 44.5
Gohir.A07G106066 Gossypium hirsutum HOM05D004020 ORTHO05D004735 4.8e-176 622.9 526 62.2
Lj2A1002G14 Lonicera japonica HOM05D004020 ORTHO05D004735 5.5e-172 609.4 682 51.6
Haze_23514 Corylus avellana HOM05D004020 ORTHO05D004735 8.2e-160 568.9 653 53.3
SalBow6G5048 Salvia bowleyana HOM05D004020 ORTHO05D004735 1.8e-159 567.8 524 58.0
Gorai.001G118200 Gossypium raimondii HOM05D004020 ORTHO05D004735 1.2e-147 528.5 380 74.2
Gohir.A07G106132 Gossypium hirsutum HOM05D004020 ORTHO05D004735 5.1e-146 523.1 387 72.9
unitig_746.g26602 Utricularia gibba HOM05D004020 ORTHO05D004735 5.7e-137 493.0 525 51.8
Cpa.g.sc47.20 Carica papaya HOM05D004020 ORTHO05D004735 3.6e-123 447.2 479 56.4
Lj2A1002G13 Lonicera japonica HOM05D004020 ORTHO05D004735 6.8e-114 416.4 413 58.8
HPP92_022569 Vanilla planifolia HOM05D004020 ORTHO05D004735 1.2e-102 379.0 324 62.0
Peaxi162Scf00150g00917 Petunia axillaris HOM05D004020 ORTHO05D004735 1.1e-98 365.9 229 73.4
SEGI_08231 Sequoiadendron giganteum HOM05D004020 ORTHO05D004735 1.3e-96 359.0 662 38.7
CBR_g49688 Chara braunii HOM05D004020 ORTHO05D004735 1.7e-93 348.6 822 32.6
unitig_746.g26604 Utricularia gibba HOM05D004020 ORTHO05D004735 4.3e-92 344.0 324 57.7
CANSAT64G1975 Cannabis sativa HOM05D004020 ORTHO05D004735 1.1e-84 319.3 189 76.7
QL01p014670 Quercus lobata HOM05D004020 ORTHO05D004735 1.8e-82 312.0 353 47.3
Cpa.g.sc47.22 Carica papaya HOM05D004020 ORTHO05D004735 3.3e-76 291.2 225 72.0
MCO09G744 Micromonas commoda HOM05D004020 ORTHO05D004735 9.9e-73 279.6 1105 25.1
C06p19250 Brassica napus HOM05D004020 ORTHO05D004735 6.4e-72 276.9 246 63.4
C06p24240 Brassica napus HOM05D004020 ORTHO05D004735 6.6e-69 266.9 259 59.8
Rhsim04G0218400 Rhododendron simsii HOM05D004020 ORTHO05D004735 3.3e-68 264.6 347 46.1
PRCOL_00006567 Prasinoderma coloniale HOM05D004020 ORTHO05D004735 2.0e-65 255.4 1234 22.0
Haze_23513 Corylus avellana HOM05D004020 ORTHO05D004735 1.6e-62 245.7 193 66.3
Hma1.2p1_1225F.1_g268540 Hydrangea macrophylla HOM05D004020 ORTHO05D004735 1.8e-61 242.3 140 79.3
HPP92_022573 Vanilla planifolia HOM05D004020 ORTHO05D004735 2.5e-60 238.4 143 76.9
arahy.Tifrunner.gnm1.ann1.FLM5Q5 Arachis hypogaea HOM05D004020 ORTHO05D004735 3.3e-60 238.0 200 58.5
Haze_23515 Corylus avellana HOM05D004020 ORTHO05D004735 2.4e-58 231.9 140 75.7
SHI06178 Sapria himalayana HOM05D004020 ORTHO05D004735 1.3e-56 226.1 449 37.6
AL580U10010 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 5.5e-55 220.7 145 84.8
DCAR_031637 Daucus carota HOM05D004020 ORTHO05D004735 4.9e-48 197.6 120 75.8
Lj2C1000T6 Lonicera japonica HOM05D004020 ORTHO05D004735 4.2e-47 194.5 118 77.1
Pp3c25_5430 Physcomitrium patens HOM05D004020 ORTHO05D004735 4.2e-47 194.5 546 31.9
TAR633G2769 Trochodendron aralioides HOM05D004020 ORTHO05D004735 1.0e-45 189.9 119 73.9
SHI06179 Sapria himalayana HOM05D004020 ORTHO05D004735 2.1e-38 165.6 133 59.4
BcaC01g02437 Brassica carinata HOM05D004020 ORTHO05D004735 7.4e-36 157.1 150 59.3
C03p65310 Brassica napus HOM05D004020 ORTHO05D004735 6.3e-35 154.1 136 64.7
Cpa.g.sc47.18 Carica papaya HOM05D004020 ORTHO05D004735 7.7e-33 147.1 87 77.0
CANSAT64G1073 Cannabis sativa HOM05D004020 ORTHO05D004735 3.8e-32 144.8 82 80.5
ClCG01G012880 Citrullus lanatus HOM05D004020 ORTHO05D004735 5.0e-32 144.4 82 80.5
FAN11G0203 Fragaria x ananassa HOM05D004020 ORTHO05D004735 7.2e-31 140.6 124 63.7
FAN21G0688 Fragaria x ananassa HOM05D004020 ORTHO05D004735 7.2e-31 140.6 124 63.7
unitig_746.g26603 Utricularia gibba HOM05D004020 ORTHO05D004735 4.7e-30 137.9 175 46.9
Cre10.g443350 Chlamydomonas reinhardtii HOM05D004020 ORTHO05D004735 3.9e-29 134.8 1142 19.2
arahy.Tifrunner.gnm1.ann1.LCV131 Arachis hypogaea HOM05D004020 ORTHO05D004735 5.7e-28 131.0 117 56.4
Rhsim04G0145900 Rhododendron simsii HOM05D000045 ORTHO05D003665 5.7e-28 131.0 137 52.6
SEGI_13700 Sequoiadendron giganteum HOM05D004020 ORTHO05D004735 1.1e-23 116.7 119 57.1
Nitab4.5_0027393g0010 Nicotiana tabacum HOM05D004020 ORTHO05D004735 2.3e-21 109.0 201 41.8
TAR476G0003 Trochodendron aralioides HOM05D004020 ORTHO05D004735 2.0e-20 105.9 94 68.1
SHI06176 Sapria himalayana HOM05D004020 ORTHO05D004735 1.7e-19 102.8 85 58.8
Nitab4.5_0005230g0050 Nicotiana tabacum HOM05D004020 ORTHO05D004735 3.1e-18 98.6 162 43.2
Haze_23512 Corylus avellana HOM05D004020 ORTHO05D004735 4.1e-18 98.2 94 63.8
FAN16G3550 Fragaria x ananassa HOM05D004020 ORTHO05D004735 4.1e-18 98.2 94 61.7
Zm00001eb064060 Zea mays HOM05D002996 ORTHO05D003536 1.6e-17 96.3 122 45.9
MD01G1172900 Malus domestica HOM05D004020 ORTHO05D004735 2.6e-17 95.5 94 59.6
HPP92_022568 Vanilla planifolia HOM05D004020 ORTHO05D004735 5.9e-17 94.4 107 51.4
SHI06174 Sapria himalayana HOM05D004020 ORTHO05D004735 2.2e-16 92.4 95 51.6
Lsat_1_v5_gn_8_150800 Lactuca sativa HOM05D003321 ORTHO05D033839 3.4e-12 78.6 80 55.0
Zm00001eb218380 Zea mays HOM05D002996 ORTHO05D003536 3.4e-12 78.6 89 43.8
Zm00001eb302500 Zea mays HOM05D004020 ORTHO05D004735 1.2e-09 70.1 94 47.9
Nitab4.5_0011593g0020 Nicotiana tabacum HOM05D004020 ORTHO05D004735 5.5e-07 61.2 43 65.1
SHI06177 Sapria himalayana HOM05D004020 ORTHO05D004735 1.6e-06 59.7 45 62.2


User provided reference genes

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