Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g07328 Brassica carinata HOM05D005421 ORTHO05D007601 1.1e-123 447.2 339 100.0
C04p68470 Brassica napus HOM05D005421 ORTHO05D007601 7.5e-120 434.5 350 96.9
A04p31080 Brassica napus HOM05D005421 ORTHO05D007601 3.7e-111 405.6 344 94.2
BcaC01g05387 Brassica carinata HOM05D005421 ORTHO05D007601 2.7e-109 399.4 349 87.7
C03p27110 Brassica napus HOM05D005421 ORTHO05D007601 1.0e-108 397.5 351 86.9
BolC3t15092H Brassica oleracea HOM05D005421 ORTHO05D007601 1.0e-108 397.5 351 86.9
BcaB01g03524 Brassica carinata HOM05D005421 ORTHO05D007601 8.6e-108 394.4 353 86.7
BraA03t11510Z Brassica rapa HOM05D005421 ORTHO05D007601 1.1e-105 387.5 353 89.2
BolC4t28347H Brassica oleracea HOM05D005421 ORTHO05D007601 9.9e-104 380.9 416 67.5
AL4G38520 Arabidopsis lyrata HOM05D005421 ORTHO05D007601 1.3e-103 380.6 354 88.1
Sp4g22980 Schrenkiella parvula HOM05D005421 ORTHO05D007601 2.9e-103 379.4 353 86.1
CARHR135760 Cardamine hirsuta HOM05D005421 ORTHO05D007601 3.8e-103 379.0 353 87.8
A03p22860 Brassica napus HOM05D005421 ORTHO05D007601 1.1e-102 377.5 374 84.2
Aa31LG3G1470 Aethionema arabicum HOM05D005421 ORTHO05D007601 3.2e-102 375.9 368 73.4
Carub.0004s2294 Capsella rubella HOM05D005421 ORTHO05D007601 4.2e-102 375.6 190 94.7
AT2G40650 Arabidopsis thaliana HOM05D005421 ORTHO05D007601 5.4e-102 375.2 190 94.2
BcaB06g29166 Brassica carinata HOM05D005421 ORTHO05D007601 1.6e-101 373.6 339 88.2
BraA04t18563Z Brassica rapa HOM05D005421 ORTHO05D007601 1.7e-100 370.2 211 87.7
RcHm_v2.0_Chr3g0456541 Rosa chinensis HOM05D005421 ORTHO05D007601 1.2e-96 357.5 190 87.9
FvH4_6g07010 Fragaria vesca HOM05D005421 ORTHO05D007601 2.6e-96 356.3 190 87.4
FAN05G0688 Fragaria x ananassa HOM05D005421 ORTHO05D007601 2.6e-96 356.3 190 87.4
THA.LOC104820733 Tarenaya hassleriana HOM05D005421 ORTHO05D007601 2.6e-96 356.3 190 87.9
FAN14G1909 Fragaria x ananassa HOM05D005421 ORTHO05D007601 5.8e-96 355.1 190 86.8
Sabra13G0010600 Salix brachista HOM05D005421 ORTHO05D007601 2.2e-95 353.2 190 86.8
THA.LOC104805907 Tarenaya hassleriana HOM05D005421 ORTHO05D007601 2.2e-95 353.2 217 83.4
Manes.13G000084 Manihot esculenta HOM05D005421 ORTHO05D007601 6.4e-95 351.7 190 86.8
TWI12G1149 Tripterygium wilfordii HOM05D005421 ORTHO05D007601 1.1e-94 350.9 190 85.3
CANSAT54G2596 Cannabis sativa HOM05D005421 ORTHO05D007601 1.4e-94 350.5 190 86.8
Potri.013G012000 Populus trichocarpa HOM05D005421 ORTHO05D007601 1.4e-94 350.5 190 85.8
Cfa006671 Carpinus fangiana HOM05D005421 ORTHO05D007601 4.2e-94 349.0 190 86.3
Ciclev10001489m.g Citrus clementina HOM05D005421 ORTHO05D007601 4.2e-94 349.0 190 86.3
Haze_04100 Corylus avellana HOM05D005421 ORTHO05D007601 4.2e-94 349.0 190 86.3
Lalb_Chr02g0148011 Lupinus albus HOM05D005421 ORTHO05D007601 5.4e-94 348.6 190 84.7
Thecc.06G040900 Theobroma cacao HOM05D005421 ORTHO05D007601 5.4e-94 348.6 190 85.3
CiPaw.07G025400 Carya illinoinensis HOM05D005421 ORTHO05D007601 7.1e-94 348.2 190 85.8
QL03p018920 Quercus lobata HOM05D005421 ORTHO05D007601 9.3e-94 347.8 190 85.8
PSO170G1114 Papaver somniferum HOM05D005421 ORTHO05D007601 2.1e-93 346.7 190 85.3
PSO407G0035 Papaver somniferum HOM05D005421 ORTHO05D007601 2.1e-93 346.7 190 85.3
HanXRQChr01g0011821 Helianthus annuus HOM05D005421 ORTHO05D007601 2.7e-93 346.3 190 85.3
FAN02G3486 Fragaria x ananassa HOM05D005421 ORTHO05D007601 3.5e-93 345.9 204 81.9
Glyma.10G149900 Glycine max HOM05D005421 ORTHO05D007601 3.5e-93 345.9 190 83.7
MD12G1209800 Malus domestica HOM05D005421 ORTHO05D007601 4.6e-93 345.5 190 85.3
Glyma.20G238500 Glycine max HOM05D005421 ORTHO05D007601 6.0e-93 345.1 190 83.7
SGA_v2.0_scaffold4G01947 Striga asiatica HOM05D005421 ORTHO05D007601 6.0e-93 345.1 343 70.8
Eucgr.H03270 Eucalyptus grandis HOM05D005421 ORTHO05D007601 7.8e-93 344.7 189 86.2
Medtr1g083720 Medicago truncatula HOM05D005421 ORTHO05D007601 7.8e-93 344.7 190 84.2
Peaxi162Scf00037g01816 Petunia axillaris HOM05D005421 ORTHO05D007601 7.8e-93 344.7 190 83.7
Atru.chr2.115 Acer truncatum HOM05D005421 ORTHO05D007601 1.0e-92 344.4 190 84.2
CSS0007056 Camellia sinensis var. sinensis HOM05D005421 ORTHO05D007601 1.0e-92 344.4 190 84.7
CSS0046729 Camellia sinensis var. sinensis HOM05D005421 ORTHO05D007601 1.0e-92 344.4 190 84.7
CAN.G1273.26 Capsicum annuum HOM05D005421 ORTHO05D007601 1.0e-92 344.4 190 84.7
MELO3C004206.2 Cucumis melo HOM05D005421 ORTHO05D007601 1.0e-92 344.4 190 84.7
ECA236G4663 Erigeron canadensis HOM05D005421 ORTHO05D007601 1.0e-92 344.4 190 84.7
Psat6g151720 Pisum sativum HOM05D005421 ORTHO05D007601 1.0e-92 344.4 190 84.7
Prupe.1G236900 Prunus persica HOM05D005421 ORTHO05D007601 1.0e-92 344.4 190 84.7
CsaV3_2G006840 Cucumis sativus L. HOM05D005421 ORTHO05D007601 1.3e-92 344.0 190 84.7
Lj5g0011296 Lotus japonicus HOM05D005421 ORTHO05D007601 1.7e-92 343.6 189 83.6
TAR636G1951 Trochodendron aralioides HOM05D005421 ORTHO05D007601 1.7e-92 343.6 189 84.7
MD04G1196900 Malus domestica HOM05D005421 ORTHO05D007601 2.3e-92 343.2 190 84.7
Sed0018701 Sechium edule HOM05D005421 ORTHO05D007601 2.3e-92 343.2 190 85.3
PGSC0003DMG400024728 Solanum tuberosum HOM05D005421 ORTHO05D007601 2.3e-92 343.2 190 83.2
Aqoxy2G02863 Aquilegia oxysepala HOM05D005421 ORTHO05D007601 3.0e-92 342.8 190 84.7
ClCG02G015170 Citrullus lanatus HOM05D005421 ORTHO05D007601 3.0e-92 342.8 190 84.7
Nitab4.5_0001971g0070 Nicotiana tabacum HOM05D005421 ORTHO05D007601 3.0e-92 342.8 190 82.6
Nitab4.5_0002612g0040 Nicotiana tabacum HOM05D005421 ORTHO05D007601 3.0e-92 342.8 190 82.6
Cpa.g.sc48.125 Carica papaya HOM05D005421 ORTHO05D007601 5.1e-92 342.0 217 78.8
Lsat_1_v5_gn_7_73220 Lactuca sativa HOM05D005421 ORTHO05D007601 5.1e-92 342.0 190 83.2
Gohir.A10G155100 Gossypium hirsutum HOM05D005421 ORTHO05D007601 6.6e-92 341.7 190 84.7
Gohir.D10G110800 Gossypium hirsutum HOM05D005421 ORTHO05D007601 6.6e-92 341.7 190 84.7
Gorai.011G122100 Gossypium raimondii HOM05D005421 ORTHO05D007601 6.6e-92 341.7 190 84.7
Ca_10154_v3 Cicer arietinum L. HOM05D005421 ORTHO05D007601 8.7e-92 341.3 189 84.1
Ca_29832_v3 Cicer arietinum L. HOM05D005421 ORTHO05D007601 8.7e-92 341.3 189 84.1
Lalb_Chr21g0310441 Lupinus albus HOM05D005421 ORTHO05D007601 8.7e-92 341.3 188 83.0
Actinidia35540 Actinidia chinensis HOM05D005421 ORTHO05D007601 1.1e-91 340.9 190 82.6
Phvul.007G199400 Phaseolus vulgaris HOM05D005421 ORTHO05D007601 1.5e-91 340.5 190 82.6
DCAR_004503 Daucus carota HOM05D005421 ORTHO05D007601 1.9e-91 340.1 190 82.6
PGR031G1007 Punica granatum HOM05D005421 ORTHO05D007601 1.9e-91 340.1 189 85.2
Solyc01g100060.4 Solanum lycopersicum HOM05D005421 ORTHO05D007601 2.5e-91 339.7 190 82.6
Sopen01g043590 Solanum pennellii HOM05D005421 ORTHO05D007601 2.5e-91 339.7 190 82.6
Ah.04g161240 Amaranthus hybridus HOM05D005421 ORTHO05D007601 3.3e-91 339.3 190 84.2
HPP92_020212 Vanilla planifolia HOM05D005421 ORTHO05D007601 3.3e-91 339.3 190 84.7
HPP92_020232 Vanilla planifolia HOM05D005421 ORTHO05D007601 3.3e-91 339.3 190 84.7
AUR62005243 Chenopodium quinoa HOM05D005421 ORTHO05D007601 5.6e-91 338.6 190 83.2
Migut.B01005 Erythranthe guttata HOM05D005421 ORTHO05D007601 5.6e-91 338.6 190 84.2
GSVIVG01031188001 Vitis vinifera HOM05D005421 ORTHO05D007601 5.6e-91 338.6 189 82.5
VMungo0720G1843 Vigna mungo HOM05D005421 ORTHO05D007601 9.6e-91 337.8 188 83.0
EL10Ac4g09870 Beta vulgaris HOM05D005421 ORTHO05D007601 2.1e-90 336.7 190 83.2
Sc16g0008670 Simmondsia chinensis HOM05D005421 ORTHO05D007601 4.8e-90 335.5 190 83.2
Duzib150G0691 Durio zibethinus HOM05D005421 ORTHO05D007601 6.2e-90 335.1 190 83.7
Hund07118 Selenicereus undatus HOM05D005421 ORTHO05D007601 6.2e-90 335.1 190 83.2
Cc02_g34540 Coffea canephora HOM05D005421 ORTHO05D007601 8.1e-90 334.7 189 83.1
Dinv30846 Davidia involucrata HOM05D005421 ORTHO05D007601 1.1e-89 334.3 190 83.2
TWI56G0052 Tripterygium wilfordii HOM05D005421 ORTHO05D007601 1.4e-89 334.0 208 76.4
Zm00001eb095730 Zea mays HOM05D005421 ORTHO05D007601 1.4e-89 334.0 190 82.1
SalBow1G5723 Salvia bowleyana HOM05D005421 ORTHO05D007601 3.1e-89 332.8 189 83.6
MBI18_g04564_MAGBIO Magnolia biondii HOM05D005421 ORTHO05D007601 9.0e-89 331.3 189 80.4
Os09g0103600 Oryza sativa ssp. japonica HOM05D005421 ORTHO05D007601 2.6e-88 329.7 190 80.5
CDE02G0330 Ceratophyllum demersum HOM05D005421 ORTHO05D007601 1.7e-87 327.0 189 79.4
Mapoly0138s0022 Marchantia polymorpha HOM05D005421 ORTHO05D007601 1.4e-86 323.9 190 79.5
COL.COLO4_26689 Corchorus olitorius HOM05D005421 ORTHO05D007601 2.7e-85 319.7 190 80.0
Nitab4.5_0003248g0020 Nicotiana tabacum HOM05D005421 ORTHO05D007601 2.7e-85 319.7 190 77.4
Rhsim11G0092200 Rhododendron simsii HOM05D005421 ORTHO05D007601 3.5e-85 319.3 239 67.4
AagrBONN_evm.TU.Sc2ySwM_117.208 Anthoceros agrestis HOM05D005421 ORTHO05D007601 1.0e-84 317.8 190 76.8
SMO361G0640 Selaginella moellendorffii HOM05D005421 ORTHO05D007601 3.9e-84 315.8 190 77.9
vmacro01533 Vaccinium macrocarpon HOM05D005421 ORTHO05D007601 5.1e-84 315.5 242 66.1
Oeu045895.1 Olea europaea HOM05D005421 ORTHO05D007601 7.4e-83 311.6 208 73.6
CBR_g27792 Chara braunii HOM05D005421 ORTHO05D007601 1.4e-81 307.4 190 75.3
AUR62000721 Chenopodium quinoa HOM05D005421 ORTHO05D007601 3.1e-81 306.2 167 84.4
COL.COLO4_07356 Corchorus olitorius HOM05D005421 ORTHO05D007601 4.0e-81 305.8 348 56.6
Pp3c1_35390 Physcomitrium patens HOM05D005421 ORTHO05D007601 1.2e-80 304.3 189 74.1
arahy.Tifrunner.gnm1.ann1.1MC3I0 Arachis hypogaea HOM05D005421 ORTHO05D007601 1.5e-80 303.9 266 59.8
arahy.Tifrunner.gnm1.ann1.MB2RBZ Arachis hypogaea HOM05D005421 ORTHO05D007601 4.9e-79 298.9 200 72.5
TWI38G1969 Tripterygium wilfordii HOM05D005421 ORTHO05D007601 1.4e-78 297.4 356 49.4
Dinv24409 Davidia involucrata HOM05D005421 ORTHO05D007601 1.6e-77 293.9 155 89.0
FAN09G4258 Fragaria x ananassa HOM05D000389 ORTHO05D000287 7.9e-77 291.6 155 87.1
Nn4g25707 Nelumbo nucifera HOM05D005421 ORTHO05D007601 1.6e-69 267.3 190 71.1
Cre12.g503400 Chlamydomonas reinhardtii HOM05D005421 ORTHO05D007601 2.7e-69 266.5 190 63.7
Peaxi162Scf00404g00814 Petunia axillaris HOM05D005421 ORTHO05D007601 3.1e-65 253.1 186 67.7
MCO01G394 Micromonas commoda HOM05D005421 ORTHO05D007601 5.9e-56 222.2 185 56.2
Haze_27467 Corylus avellana HOM05D005421 ORTHO05D007601 8.8e-52 208.4 184 53.3
PRCOL_00004539 Prasinoderma coloniale HOM05D005421 ORTHO05D007601 4.4e-51 206.1 192 53.6
Potri.005G021600 Populus trichocarpa HOM05D005421 ORTHO05D007601 7.2e-46 188.7 139 67.6
Lj9C202T10 Lonicera japonica HOM05D005421 ORTHO05D007601 4.8e-42 176.0 97 81.4
SEGI_13779 Sequoiadendron giganteum HOM05D005421 ORTHO05D007601 3.2e-38 163.3 94 78.7
Lj9A202T65 Lonicera japonica HOM05D005421 ORTHO05D007601 2.7e-37 160.2 93 78.5
Prupe.6G317400 Prunus persica HOM05D005421 ORTHO05D007601 2.3e-36 157.1 95 76.8
SEGI_07889 Sequoiadendron giganteum HOM05D005421 ORTHO05D007601 1.3e-23 114.8 90 62.2
ATR0469G001 Amborella trichopoda HOM05D005421 ORTHO05D007601 4.2e-22 109.8 70 71.4
ATR1164G001 Amborella trichopoda HOM05D005421 ORTHO05D007601 4.2e-22 109.8 70 71.4
TAR362G1077 Trochodendron aralioides HOM05D005421 ORTHO05D026565 2.7e-16 90.5 52 80.8
RcHm_v2.0_Chr7g0209371 Rosa chinensis HOM05D005421 ORTHO05D007601 1.9e-14 84.3 53 66.0
Lj3g0025046 Lotus japonicus HOM05D005421 ORTHO05D026565 1.2e-13 81.6 60 66.7
BcaB06g27834 Brassica carinata HOM05D005421 ORTHO05D031867 2.8e-13 80.5 69 60.9
Dinv05263 Davidia involucrata HOM05D002902 ORTHO05D008934 4.9e-10 69.7 42 73.8
BcaB06g29163 Brassica carinata HOM05D005421 ORTHO05D031077 1.9e-09 67.8 189 63.5
BcaB06g29165 Brassica carinata HOM05D011401 ORTHO05D018605 2.7e-08 63.9 118 39.8
BcaB06g29159 Brassica carinata HOM05D005421 ORTHO05D031077 2.5e-06 57.4 31 83.9
ATR0693G223 Amborella trichopoda HOM05D005421 ORTHO05D031077 7.3e-06 55.8 27 88.9


User provided reference genes

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