Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g06799 Brassica carinata HOM05D006460 ORTHO05D008143 1.5e-264 915.6 448 100.0
BolC3t16117H Brassica oleracea HOM05D006460 ORTHO05D008143 1.5e-264 915.6 448 100.0
C03p38430 Brassica napus HOM05D006460 ORTHO05D008143 3.4e-261 904.4 448 98.7
A03p31440 Brassica napus HOM05D006460 ORTHO05D008143 3.2e-251 871.3 449 95.5
BraA03t12325Z Brassica rapa HOM05D006460 ORTHO05D008143 5.3e-246 854.0 450 93.8
BcaB01g02385 Brassica carinata HOM05D006460 ORTHO05D008143 7.6e-237 823.5 455 90.3
Thhalv10028644m.g Eutrema salsugineum HOM05D006460 ORTHO05D008143 1.4e-227 792.7 461 85.9
Thhalv10028645m.g Eutrema salsugineum HOM05D006460 ORTHO05D008143 1.4e-227 792.7 461 85.9
Sp6g01720 Schrenkiella parvula HOM05D006460 ORTHO05D008143 1.6e-226 789.3 459 86.3
AT4G01880 Arabidopsis thaliana HOM05D006460 ORTHO05D008143 2.8e-223 778.5 456 85.3
CARHR249840 Cardamine hirsuta HOM05D006460 ORTHO05D008143 1.0e-220 770.0 456 83.6
AL6G51420 Arabidopsis lyrata HOM05D006460 ORTHO05D008143 1.9e-219 765.8 460 84.3
Carub.0006s3536 Capsella rubella HOM05D006460 ORTHO05D008143 3.0e-217 758.4 445 84.7
Aa31LG5G1480 Aethionema arabicum HOM05D006460 ORTHO05D008143 4.7e-202 708.0 477 74.4
THA.LOC104801320 Tarenaya hassleriana HOM05D006460 ORTHO05D008143 2.7e-181 639.0 450 71.8
GSVIVG01028196001 Vitis vinifera HOM05D006460 ORTHO05D008143 5.4e-166 588.2 449 65.7
Gorai.001G146600 Gossypium raimondii HOM05D006460 ORTHO05D008143 7.8e-165 584.3 448 62.5
Gohir.D07G134900 Gossypium hirsutum HOM05D006460 ORTHO05D008143 1.7e-164 583.2 451 62.1
COL.COLO4_23162 Corchorus olitorius HOM05D006460 ORTHO05D008143 1.1e-163 580.5 452 62.4
TAR362G0080 Trochodendron aralioides HOM05D006460 ORTHO05D008143 5.6e-163 578.2 471 61.8
CAN.G100.27 Capsicum annuum HOM05D006460 ORTHO05D008143 7.3e-163 577.8 450 62.9
Sc17g0000180 Simmondsia chinensis HOM05D006460 ORTHO05D008143 1.2e-162 577.0 460 63.0
Prupe.3G004500 Prunus persica HOM05D006460 ORTHO05D008143 1.6e-162 576.6 461 62.3
Potri.002G189800 Populus trichocarpa HOM05D006460 ORTHO05D008143 2.1e-162 576.2 447 63.5
Haze_05122 Corylus avellana HOM05D006460 ORTHO05D008143 4.7e-162 575.1 450 62.9
Sabra02G0165800 Salix brachista HOM05D006460 ORTHO05D008143 4.7e-162 575.1 447 62.9
Duzib138G1376 Durio zibethinus HOM05D006460 ORTHO05D008143 4.0e-161 572.0 452 61.5
Atru.chr5.915 Acer truncatum HOM05D006460 ORTHO05D008143 3.4e-160 568.9 452 61.3
Oeu002575.1 Olea europaea HOM05D006460 ORTHO05D008143 5.8e-160 568.2 458 61.1
PGSC0003DMG400005211 Solanum tuberosum HOM05D006460 ORTHO05D008143 7.5e-160 567.8 453 62.0
Solyc01g068050.3 Solanum lycopersicum HOM05D006460 ORTHO05D008143 9.8e-160 567.4 453 61.4
PGR083G0788 Punica granatum HOM05D006460 ORTHO05D008143 1.3e-159 567.0 458 61.1
QL12p034319 Quercus lobata HOM05D006460 ORTHO05D008143 1.7e-159 566.6 464 61.6
CiPaw.04G089700 Carya illinoinensis HOM05D006460 ORTHO05D008143 4.9e-159 565.1 448 61.6
Lj1C11T12 Lonicera japonica HOM05D006460 ORTHO05D008143 6.4e-159 564.7 471 59.0
Ciclev10001046m.g Citrus clementina HOM05D006460 ORTHO05D008143 1.4e-158 563.5 451 63.0
Manes.05G010900 Manihot esculenta HOM05D006460 ORTHO05D008143 1.9e-158 563.1 446 61.4
FvH4_1g26500 Fragaria vesca HOM05D006460 ORTHO05D008143 7.0e-158 561.2 472 58.3
CANSAT56G1882 Cannabis sativa HOM05D006460 ORTHO05D008143 9.2e-158 560.8 472 59.7
FAN28G1427 Fragaria x ananassa HOM05D006460 ORTHO05D008143 9.2e-158 560.8 471 58.0
RcHm_v2.0_Chr3g0486571 Rosa chinensis HOM05D006460 ORTHO05D008143 9.2e-158 560.8 471 57.7
Sed0027463 Sechium edule HOM05D006460 ORTHO05D008143 9.2e-158 560.8 444 60.6
SalBow6G2760 Salvia bowleyana HOM05D006460 ORTHO05D008143 1.2e-157 560.5 454 60.1
Cpa.g.sc543.2 Carica papaya HOM05D006460 ORTHO05D008143 3.5e-157 558.9 459 61.2
Eucgr.H00886 Eucalyptus grandis HOM05D006460 ORTHO05D008143 7.8e-157 557.8 452 60.6
Migut.D00030 Erythranthe guttata HOM05D006460 ORTHO05D008143 1.0e-156 557.4 452 60.8
MD09G1293200 Malus domestica HOM05D006460 ORTHO05D008143 3.9e-156 555.4 457 59.7
TWI14G0400 Tripterygium wilfordii HOM05D006460 ORTHO05D008143 3.9e-156 555.4 452 61.3
Actinidia21358 Actinidia chinensis HOM05D006460 ORTHO05D008143 1.2e-154 550.4 469 58.6
Nn4g25417 Nelumbo nucifera HOM05D006460 ORTHO05D008143 2.1e-154 549.7 476 58.6
Glyma.07G170000 Glycine max HOM05D006460 ORTHO05D008143 2.8e-154 549.3 450 60.2
DCAR_012316 Daucus carota HOM05D006460 ORTHO05D008143 5.2e-153 545.0 453 58.7
ClCG09G004700 Citrullus lanatus HOM05D006460 ORTHO05D008143 6.8e-153 544.7 460 58.5
Nitab4.5_0000222g0270 Nicotiana tabacum HOM05D006460 ORTHO05D008143 8.9e-153 544.3 476 58.0
VMungo1215G1636 Vigna mungo HOM05D006460 ORTHO05D008143 1.5e-152 543.5 451 59.2
MSTRG.21724 Avicennia marina HOM05D006460 ORTHO05D008143 2.0e-152 543.1 455 60.0
Gohir.A07G130500 Gossypium hirsutum HOM05D006460 ORTHO05D008143 5.8e-152 541.6 449 59.2
CSS0037090 Camellia sinensis var. sinensis HOM05D006460 ORTHO05D008143 3.7e-151 538.9 479 55.7
Ca_12543_v3 Cicer arietinum L. HOM05D006460 ORTHO05D008143 1.4e-150 537.0 456 58.6
Lj2g0013221 Lotus japonicus HOM05D006460 ORTHO05D008143 1.9e-150 536.6 457 58.6
Phvul.003G019300 Phaseolus vulgaris HOM05D006460 ORTHO05D008143 2.4e-150 536.2 451 59.0
Lalb_Chr17g0338451 Lupinus albus HOM05D006460 ORTHO05D008143 1.6e-149 533.5 460 59.1
Cc01_g21920 Coffea canephora HOM05D006460 ORTHO05D008143 3.5e-149 532.3 457 58.4
SGA_v2.0_scaffold417G51258 Striga asiatica HOM05D006460 ORTHO05D008143 2.3e-148 529.6 467 57.6
Thecc.01G322200 Theobroma cacao HOM05D006460 ORTHO05D008143 8.6e-148 527.7 451 59.2
HanXRQChr13g0414441 Helianthus annuus HOM05D006460 ORTHO05D008143 1.1e-147 527.3 443 59.4
Aqoxy5G02768 Aquilegia oxysepala HOM05D006460 ORTHO05D008143 3.3e-147 525.8 460 56.3
Lsat_1_v5_gn_8_167341 Lactuca sativa HOM05D006460 ORTHO05D008143 4.3e-147 525.4 436 60.1
Medtr1g032120 Medicago truncatula HOM05D006460 ORTHO05D008143 9.5e-147 524.2 460 57.2
PSO357G0369 Papaver somniferum HOM05D006460 ORTHO05D008143 5.2e-145 518.5 455 57.8
Psat6g046360 Pisum sativum HOM05D006460 ORTHO05D008143 8.9e-145 517.7 457 57.1
AUR62024570 Chenopodium quinoa HOM05D006460 ORTHO05D008143 1.5e-144 516.9 440 57.0
AUR62011736 Chenopodium quinoa HOM05D006460 ORTHO05D008143 3.4e-144 515.8 440 57.3
arahy.Tifrunner.gnm1.ann1.N25L3F Arachis hypogaea HOM05D006460 ORTHO05D008143 8.4e-143 511.1 480 54.4
TPR.G36866 Trifolium pratense HOM05D006460 ORTHO05D008143 8.4e-143 511.1 495 53.3
vmacro02372 Vaccinium macrocarpon HOM05D006460 ORTHO05D008143 8.4e-143 511.1 516 51.7
FAN19G0891 Fragaria x ananassa HOM05D006460 ORTHO05D008143 2.7e-141 506.1 472 54.9
FAN26G0500 Fragaria x ananassa HOM05D006460 ORTHO05D008143 7.8e-141 504.6 472 54.7
arahy.Tifrunner.gnm1.ann1.R72PZK Arachis hypogaea HOM05D006460 ORTHO05D008143 1.0e-140 504.2 487 53.6
CDE08G1018 Ceratophyllum demersum HOM05D006460 ORTHO05D008143 8.7e-140 501.1 462 54.1
Cfa004883 Carpinus fangiana HOM05D006460 ORTHO05D008143 2.8e-138 496.1 409 61.6
Rhsim13G0001100 Rhododendron simsii HOM05D006460 ORTHO05D008143 2.4e-137 493.0 416 59.9
ATR0796G118 Amborella trichopoda HOM05D006460 ORTHO05D008143 4.0e-137 492.3 484 51.0
Hund09677 Selenicereus undatus HOM05D006460 ORTHO05D008143 2.0e-136 490.0 458 55.0
ECA236G0789 Erigeron canadensis HOM05D004810 ORTHO05D006272 3.0e-132 476.1 407 58.7
Nitab4.5_0002994g0020 Nicotiana tabacum HOM05D006460 ORTHO05D008143 2.0e-128 463.4 469 51.8
EL10As5g23582 Beta vulgaris HOM05D006460 ORTHO05D008143 2.6e-128 463.0 471 52.0
PSO170G6216 Papaver somniferum HOM05D006460 ORTHO05D008143 9.3e-126 454.5 383 58.5
MELO3C023610.2 Cucumis melo HOM05D006460 ORTHO05D008143 6.0e-125 451.8 437 52.4
PSO384G3244 Papaver somniferum HOM05D006460 ORTHO05D008143 1.0e-124 451.1 367 59.9
HPP92_010877 Vanilla planifolia HOM05D000746 ORTHO05D000573 1.8e-121 440.3 446 49.6
CSS0008981 Camellia sinensis var. sinensis HOM05D006460 ORTHO05D008143 1.9e-118 430.3 371 57.4
Eucgr.L00887 Eucalyptus grandis HOM05D006460 ORTHO05D008143 1.6e-117 427.2 346 60.4
Dinv33158 Davidia involucrata HOM05D001974 ORTHO05D001995 3.9e-116 422.5 337 60.2
CsaV3_7G030430 Cucumis sativus L. HOM05D006460 ORTHO05D008143 1.1e-115 421.0 353 59.5
Ah.11g045760 Amaranthus hybridus HOM05D006460 ORTHO05D008143 1.6e-114 417.2 441 49.7
Zm00001eb211340 Zea mays HOM05D006460 ORTHO05D008143 4.2e-110 402.5 352 53.7
AagrBONN_evm.TU.Sc2ySwM_228.322 Anthoceros agrestis HOM05D006460 ORTHO05D008143 7.1e-110 401.7 451 46.8
AagrBONN_evm.TU.Sc2ySwM_344.3324 Anthoceros agrestis HOM05D006460 ORTHO05D008143 1.1e-107 394.4 452 46.2
Pp3c21_16200 Physcomitrium patens HOM05D006460 ORTHO05D008143 1.2e-104 384.4 513 40.5
Mapoly0095s0050 Marchantia polymorpha HOM05D006460 ORTHO05D008143 8.5e-103 378.3 489 42.1
Peaxi162Scf00919g00047 Petunia axillaris HOM05D006460 ORTHO05D008143 1.4e-97 360.9 343 54.8
Sopen01g029980 Solanum pennellii HOM05D006460 ORTHO05D008143 4.1e-97 359.4 293 61.1
SMO010G0007 Selaginella moellendorffii HOM05D006460 ORTHO05D008143 1.9e-94 350.5 445 40.7
MBI18_g28900_MAGBIO Magnolia biondii HOM05D006460 ORTHO05D008143 3.6e-77 293.1 432 41.4
unitig_578.g16638 Utricularia gibba HOM05D006460 ORTHO05D008143 4.0e-76 289.7 441 38.3
Os03g0833200 Oryza sativa ssp. japonica HOM05D006460 ORTHO05D008143 1.4e-60 238.0 237 51.1
MCO13G012 Micromonas commoda HOM05D006460 ORTHO05D008143 3.7e-50 203.4 469 29.6
SEGI_40178 Sequoiadendron giganteum HOM05D006460 ORTHO05D008143 6.2e-45 186.0 278 37.4
SMO339G0034 Selaginella moellendorffii HOM05D006460 ORTHO05D008143 8.0e-45 185.7 231 41.6
PRCOL_00001885 Prasinoderma coloniale HOM05D006460 ORTHO05D008143 4.9e-42 176.4 471 29.1
AUR62036055 Chenopodium quinoa HOM05D006460 ORTHO05D008143 1.5e-38 164.9 149 55.7
AUR62029044 Chenopodium quinoa HOM05D006460 ORTHO05D008143 9.5e-38 162.2 149 56.4
MD17G1281000 Malus domestica HOM05D006460 ORTHO05D008143 1.2e-37 161.8 228 41.7
AagrBONN_evm.TU.Sc2ySwM_228.45 Anthoceros agrestis HOM05D006460 ORTHO05D008143 3.9e-23 113.6 212 36.8
CBR_g49426 Chara braunii HOM05D006460 ORTHO05D008143 1.9e-22 111.3 107 51.4
Cre16.g654992 Chlamydomonas reinhardtii HOM05D006460 ORTHO05D008143 1.3e-18 98.6 804 19.8
RcHm_v2.0_Chr7g0232271 Rosa chinensis HOM05D006460 ORTHO05D008143 1.7e-15 88.2 49 81.6
QL04p085746 Quercus lobata HOM05D006460 ORTHO05D008143 3.9e-15 87.0 106 49.1
AUR62007801 Chenopodium quinoa HOM05D006460 ORTHO05D008143 4.8e-13 80.1 69 55.1
Hund09679 Selenicereus undatus HOM05D006460 ORTHO05D008143 3.4e-11 73.9 63 47.6
QL05p033637 Quercus lobata HOM05D000101 ORTHO05D000089 3.5e-08 63.9 73 50.7
CDE02G3709 Ceratophyllum demersum HOM05D006460 ORTHO05D008143 1.3e-07 62.0 48 52.1
AUR62043166 Chenopodium quinoa HOM05D006460 ORTHO05D008143 2.3e-07 61.2 64 50.0


User provided reference genes

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