Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g06716 Brassica carinata HOM05D011698 ORTHO05D013798 1.3e-190 669.8 420 100.0
BolC3t16032H Brassica oleracea HOM05D011698 ORTHO05D013798 8.5e-190 667.2 420 99.5
C03p37400 Brassica napus HOM05D011698 ORTHO05D013798 2.5e-189 665.6 420 99.0
BraA03t12249Z Brassica rapa HOM05D011698 ORTHO05D013798 1.4e-168 596.7 420 84.3
A03p30700 Brassica napus HOM05D011698 ORTHO05D013798 1.8e-163 579.7 420 82.9
BcaB01g02493 Brassica carinata HOM05D011698 ORTHO05D013798 6.9e-123 444.9 439 58.5
A03p30710 Brassica napus HOM05D011698 ORTHO05D013798 1.5e-72 277.7 426 43.2
BcaC01g06718 Brassica carinata HOM05D011698 ORTHO05D013798 8.0e-71 271.9 423 48.5
BolC3t16033H Brassica oleracea HOM05D011698 ORTHO05D013798 2.6e-69 266.9 431 42.2
C03p37410 Brassica napus HOM05D011698 ORTHO05D013798 1.1e-67 261.5 431 41.5
BraA03t12250Z Brassica rapa HOM05D011698 ORTHO05D013798 7.0e-67 258.8 432 41.2
Sp6g03000 Schrenkiella parvula HOM05D011698 ORTHO05D013798 1.1e-40 171.8 428 34.6
Thhalv10029305m.g Eutrema salsugineum HOM05D003286 ORTHO05D021628 1.3e-23 115.2 460 31.5
BcaB01g01995 Brassica carinata HOM05D011698 ORTHO05D021628 7.6e-21 105.9 473 27.5
Carub.0006s3411 Capsella rubella HOM05D003286 ORTHO05D002463 6.7e-17 92.8 427 25.8
C09p02380 Brassica napus HOM05D003286 ORTHO05D021628 3.3e-16 90.5 453 26.3
BcaB01g02490 Brassica carinata HOM05D011698 ORTHO05D013798 1.3e-15 88.6 229 34.9
Sp6g03010 Schrenkiella parvula HOM05D003286 ORTHO05D013798 1.6e-15 88.2 201 37.3
BraA09t35877Z Brassica rapa HOM05D003286 ORTHO05D021628 2.8e-15 87.4 451 30.2
A09p02280 Brassica napus HOM05D003286 ORTHO05D021628 1.4e-14 85.1 124 43.5
BolC9t53169H Brassica oleracea HOM05D003286 ORTHO05D021628 1.4e-14 85.1 458 31.2
Thhalv10029513m.g Eutrema salsugineum HOM05D003286 ORTHO05D002463 3.1e-14 84.0 82 51.2
Thecc.10G122300 Theobroma cacao HOM05D003286 ORTHO05D002463 2.6e-13 80.9 90 50.0
Solyc11g011900.1 Solanum lycopersicum HOM05D003286 ORTHO05D002463 1.4e-11 75.1 65 56.9
A09p02290 Brassica napus HOM05D003286 ORTHO05D020140 2.5e-11 74.3 194 32.5
BraA09t35878Z Brassica rapa HOM05D003286 ORTHO05D020140 2.5e-11 74.3 194 32.5
Hma1.2p1_0158F.1_g069790 Hydrangea macrophylla HOM05D003286 ORTHO05D002463 2.5e-11 74.3 68 55.9
BolC9t53171H Brassica oleracea HOM05D003286 ORTHO05D020140 3.2e-11 73.9 73 54.8
BcaB01g01895 Brassica carinata HOM05D003286 ORTHO05D002463 4.2e-11 73.6 83 47.0
Carub.0006s3317 Capsella rubella HOM05D003286 ORTHO05D002463 4.2e-11 73.6 126 37.3
Lj1P1225T26 Lonicera japonica HOM05D003286 ORTHO05D002463 4.2e-11 73.6 68 52.9
Nn1g03635 Nelumbo nucifera HOM05D003286 ORTHO05D002463 4.2e-11 73.6 68 54.4
BcaC01g00928 Brassica carinata HOM05D003286 ORTHO05D002463 5.5e-11 73.2 83 47.0
A08p17100 Brassica napus HOM05D003286 ORTHO05D002463 5.5e-11 73.2 83 47.0
C03p86020 Brassica napus HOM05D003286 ORTHO05D002463 5.5e-11 73.2 83 47.0
BolC3t20894H Brassica oleracea HOM05D003286 ORTHO05D002463 5.5e-11 73.2 83 47.0
Thhalv10028963m.g Eutrema salsugineum HOM05D003286 ORTHO05D002463 5.5e-11 73.2 83 48.2
BcaC04g21387 Brassica carinata HOM05D003286 ORTHO05D002463 7.1e-11 72.8 103 41.7
C09p02390 Brassica napus HOM05D003286 ORTHO05D020140 7.1e-11 72.8 73 53.4
C09p32410 Brassica napus HOM05D003286 ORTHO05D002463 7.1e-11 72.8 103 41.7
BolC9t56086H Brassica oleracea HOM05D003286 ORTHO05D002463 7.1e-11 72.8 103 41.7
CARHR252330 Cardamine hirsuta HOM05D003286 ORTHO05D002463 7.1e-11 72.8 68 54.4
Ciclev10018056m.g Citrus clementina HOM05D003286 ORTHO05D002463 7.1e-11 72.8 79 48.1
Duzib160G0656 Durio zibethinus HOM05D003286 ORTHO05D002463 7.1e-11 72.8 68 54.4
Glyma.U031417 Glycine max HOM05D003286 ORTHO05D002463 7.1e-11 72.8 88 47.7
TPR.G34503 Trifolium pratense HOM05D003286 ORTHO05D002463 7.1e-11 72.8 73 53.4
BraA08t33672Z Brassica rapa HOM05D003286 ORTHO05D002463 9.3e-11 72.4 91 44.0
Carub.0006s3413 Capsella rubella HOM05D003286 ORTHO05D002463 9.3e-11 72.4 68 52.9
COL.COLO4_31727 Corchorus olitorius HOM05D003286 ORTHO05D002463 9.3e-11 72.4 68 54.4
Glyma.13G153900 Glycine max HOM05D003286 ORTHO05D002463 9.3e-11 72.4 91 48.4
Gohir.A10G015100 Gossypium hirsutum HOM05D003286 ORTHO05D002463 9.3e-11 72.4 68 52.9
A09p25500 Brassica napus HOM05D003286 ORTHO05D002463 1.2e-10 72.0 102 40.2
C09p02400 Brassica napus HOM05D003286 ORTHO05D020140 1.2e-10 72.0 73 53.4
BraA09t38125Z Brassica rapa HOM05D003286 ORTHO05D002463 1.2e-10 72.0 102 40.2
CAN.G222.170 Capsicum annuum HOM05D003286 ORTHO05D002463 1.2e-10 72.0 65 53.8
Duzib235G0679 Durio zibethinus HOM05D003286 ORTHO05D002463 1.2e-10 72.0 68 54.4
Gohir.D10G015100 Gossypium hirsutum HOM05D003286 ORTHO05D002463 1.2e-10 72.0 68 52.9
Gorai.011G016700 Gossypium raimondii HOM05D003286 ORTHO05D002463 1.2e-10 72.0 68 52.9
Nn1g08164 Nelumbo nucifera HOM05D003286 ORTHO05D002463 1.2e-10 72.0 68 52.9
Potri.004G022400 Populus trichocarpa HOM05D003286 ORTHO05D002463 1.2e-10 72.0 68 54.4
Thecc.06G214200 Theobroma cacao HOM05D003286 ORTHO05D002463 1.2e-10 72.0 68 54.4
CARHR251320 Cardamine hirsuta HOM05D003286 ORTHO05D002463 1.6e-10 71.6 68 52.9
Gohir.A10G211300 Gossypium hirsutum HOM05D003286 ORTHO05D002463 1.6e-10 71.6 68 52.9
Sabra04G0012200 Salix brachista HOM05D003286 ORTHO05D002463 1.6e-10 71.6 65 55.4
FAN24G2961 Fragaria x ananassa HOM05D003286 ORTHO05D002463 2.1e-10 71.2 103 46.6
Lalb_Chr10g0101691 Lupinus albus HOM05D003286 ORTHO05D002463 2.1e-10 71.2 73 52.1
Manes.17G035100 Manihot esculenta HOM05D003286 ORTHO05D002463 2.1e-10 71.2 68 52.9
Peaxi162Scf00063g00244 Petunia axillaris HOM05D003286 ORTHO05D002463 2.1e-10 71.2 68 54.4
Psat6g165560 Pisum sativum HOM05D003286 ORTHO05D002463 2.1e-10 71.2 68 54.4
RcHm_v2.0_Chr5g0003951 Rosa chinensis HOM05D003286 ORTHO05D002463 2.7e-10 70.9 73 54.8
Cpa.g.sc198.10 Carica papaya HOM05D003286 ORTHO05D002463 3.5e-10 70.5 68 52.9
CiPaw.09G087100 Carya illinoinensis HOM05D003286 ORTHO05D002463 3.5e-10 70.5 68 52.9
QL05p075142 Quercus lobata HOM05D003286 ORTHO05D002463 3.5e-10 70.5 68 51.5
QL93p0073_0716 Quercus lobata HOM05D003286 ORTHO05D002463 3.5e-10 70.5 68 51.5
Sp6g02990 Schrenkiella parvula HOM05D003286 ORTHO05D002463 3.5e-10 70.5 83 44.6
Actinidia01598 Actinidia chinensis HOM05D003286 ORTHO05D002463 4.6e-10 70.1 72 50.0
AT4G05230 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 4.6e-10 70.1 133 35.3
Ca_16278_v3 Cicer arietinum L. HOM05D000120 ORTHO05D002463 4.6e-10 70.1 73 52.1
Psat5g122680 Pisum sativum HOM05D003286 ORTHO05D002463 4.6e-10 70.1 68 52.9
Cfa000276 Carpinus fangiana HOM05D003286 ORTHO05D002463 6.0e-10 69.7 98 43.9
Cfa000701 Carpinus fangiana HOM05D003286 ORTHO05D002463 6.0e-10 69.7 68 51.5
FvH4_2g19820 Fragaria vesca HOM05D003286 ORTHO05D002463 6.0e-10 69.7 90 44.4
unitig_32.g10728 Utricularia gibba HOM05D003286 ORTHO05D002463 6.0e-10 69.7 101 39.6
Aa31sc199G10 Aethionema arabicum HOM05D003286 ORTHO05D002463 7.9e-10 69.3 68 52.9
AT4G03370 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 7.9e-10 69.3 89 46.1
BolC9t53170H Brassica oleracea HOM05D003286 ORTHO05D020140 7.9e-10 69.3 73 52.1
CSS0013854 Camellia sinensis var. sinensis HOM05D003286 ORTHO05D002463 7.9e-10 69.3 68 50.0
Eucgr.D00812 Eucalyptus grandis HOM05D003286 ORTHO05D002463 7.9e-10 69.3 85 44.7
Eucgr.E03707 Eucalyptus grandis HOM05D003286 ORTHO05D002463 7.9e-10 69.3 90 43.3
VMungo0251G0596 Vigna mungo HOM05D003286 ORTHO05D002463 7.9e-10 69.3 68 51.5
Aqoxy1G02958 Aquilegia oxysepala HOM05D003286 ORTHO05D002463 1.0e-09 68.9 69 47.8
GSVIVG01012631001 Vitis vinifera HOM05D003286 ORTHO05D002463 1.0e-09 68.9 68 52.9
Cc07_g12950 Coffea canephora HOM05D003286 ORTHO05D002463 1.3e-09 68.6 103 42.7
Migut.K01114 Erythranthe guttata HOM05D003286 ORTHO05D002463 1.3e-09 68.6 64 53.1
Manes.17G035200 Manihot esculenta HOM05D003286 ORTHO05D002463 1.3e-09 68.6 68 51.5
Phvul.002G250900 Phaseolus vulgaris HOM05D003286 ORTHO05D002463 1.3e-09 68.6 102 42.2
unitig_748.g8449 Utricularia gibba HOM05D003286 ORTHO05D002463 1.3e-09 68.6 89 40.4
AL6G48830 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 1.8e-09 68.2 126 35.7
HanXRQChr08g0234141 Helianthus annuus HOM05D003286 ORTHO05D002463 1.8e-09 68.2 103 42.7
MBI02_g21870_MAGBIO Magnolia biondii HOM05D003286 ORTHO05D002463 1.8e-09 68.2 91 46.2
Lj2g0008596 Lotus japonicus HOM05D003286 ORTHO05D002463 2.3e-09 67.8 73 50.7
MD10G1314800 Malus domestica HOM05D003286 ORTHO05D002463 2.3e-09 67.8 69 50.7
THA.LOC104806256 Tarenaya hassleriana HOM05D003286 ORTHO05D002463 2.3e-09 67.8 103 39.8
C02p39730 Brassica napus HOM05D003286 ORTHO05D002463 3.0e-09 67.4 68 50.0
FAN15G1751 Fragaria x ananassa HOM05D003286 ORTHO05D002463 3.0e-09 67.4 99 42.4
Medtr3g080180 Medicago truncatula HOM05D003286 ORTHO05D002463 3.0e-09 67.4 73 49.3
ClCG01G022170 Citrullus lanatus HOM05D003286 ORTHO05D002463 3.9e-09 67.0 69 50.7
MELO3C007371.2 Cucumis melo HOM05D003286 ORTHO05D002463 3.9e-09 67.0 69 50.7
CsaV3_6G049250 Cucumis sativus L. HOM05D003286 ORTHO05D002463 3.9e-09 67.0 69 50.7
Prupe.4G026000 Prunus persica HOM05D003286 ORTHO05D002463 3.9e-09 67.0 68 50.0
DCAR_030615 Daucus carota HOM05D003286 ORTHO05D002463 5.1e-09 66.6 69 47.8
ECA238G0902 Erigeron canadensis HOM05D003286 ORTHO05D002463 5.1e-09 66.6 73 46.6
AL6G49970 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 8.7e-09 65.9 89 43.8
PSO675G8889 Papaver somniferum HOM05D003286 ORTHO05D002463 8.7e-09 65.9 69 47.8
Thhalv10029386m.g Eutrema salsugineum HOM05D003286 ORTHO05D002463 1.1e-08 65.5 102 41.2
Lsat_1_v5_gn_8_111880 Lactuca sativa HOM05D003286 ORTHO05D002463 1.1e-08 65.5 73 46.6
PGR004G2484 Punica granatum HOM05D003286 ORTHO05D002463 1.1e-08 65.5 71 49.3
PGR042G2119 Punica granatum HOM05D003286 ORTHO05D002463 1.1e-08 65.5 69 47.8
AL6G48840 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 1.5e-08 65.1 92 40.2
CANSAT56G4121 Cannabis sativa HOM05D003286 ORTHO05D002463 1.5e-08 65.1 69 43.5
Lj1g0012071 Lotus japonicus HOM05D003286 ORTHO05D002463 1.5e-08 65.1 68 51.5
PSO541G2565 Papaver somniferum HOM05D003286 ORTHO05D002463 1.5e-08 65.1 88 40.9
HPP92_012327 Vanilla planifolia HOM05D003286 ORTHO05D002463 1.9e-08 64.7 79 44.3
HPP92_012386 Vanilla planifolia HOM05D003286 ORTHO05D002463 1.9e-08 64.7 79 44.3
Carub.0006s3412 Capsella rubella HOM05D003286 ORTHO05D002463 3.3e-08 63.9 105 39.0
Sed0004843 Sechium edule HOM05D003286 ORTHO05D002463 4.3e-08 63.5 68 48.5
CARHR251370 Cardamine hirsuta HOM05D003286 ORTHO05D002463 5.6e-08 63.2 94 39.4
AL6G49960 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 9.6e-08 62.4 108 36.1
CARHR252290 Cardamine hirsuta HOM05D003286 ORTHO05D002463 9.6e-08 62.4 63 49.2
Oeu009440.1 Olea europaea HOM05D003286 ORTHO05D002463 1.3e-07 62.0 81 45.7
AT4G03350 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 1.6e-07 61.6 108 37.0
Eucgr.F00162 Eucalyptus grandis HOM05D003286 ORTHO05D002463 1.6e-07 61.6 90 40.0
Manes.16G012200 Manihot esculenta HOM05D003286 ORTHO05D002463 1.6e-07 61.6 68 48.5
AL6G49560 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 2.1e-07 61.2 80 43.8
TAR624G0182 Trochodendron aralioides HOM05D003286 ORTHO05D002463 2.1e-07 61.2 80 46.2
CARHR251340 Cardamine hirsuta HOM05D003286 ORTHO05D116431 2.8e-07 60.8 81 40.7
TWI38G0444 Tripterygium wilfordii HOM05D003286 ORTHO05D002463 2.8e-07 60.8 68 45.6
Carub.0006s3318 Capsella rubella HOM05D003286 ORTHO05D002463 3.7e-07 60.5 106 37.7
AT4G02970 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 4.8e-07 60.1 90 41.1
AUR62015794 Chenopodium quinoa HOM05D003286 ORTHO05D002463 4.8e-07 60.1 68 44.1
CARHR251360 Cardamine hirsuta HOM05D003286 ORTHO05D002463 6.2e-07 59.7 106 38.7
TAR624G0858 Trochodendron aralioides HOM05D003286 ORTHO05D002463 6.2e-07 59.7 80 45.0
GSVIVG01029957001 Vitis vinifera HOM05D003286 ORTHO05D002463 8.2e-07 59.3 67 44.8
AUR62020422 Chenopodium quinoa HOM05D003286 ORTHO05D002463 1.1e-06 58.9 106 36.8
TAR624G0130 Trochodendron aralioides HOM05D003286 ORTHO05D002463 2.4e-06 57.8 80 43.8
BolC9t53168H Brassica oleracea HOM05D003286 ORTHO05D002463 3.1e-06 57.4 84 39.3
C09p02370 Brassica napus HOM05D003286 ORTHO05D002463 4.0e-06 57.0 71 45.1
Rhsim10G0183400 Rhododendron simsii HOM05D003286 ORTHO05D002463 4.0e-06 57.0 68 41.2
CARHR252280 Cardamine hirsuta HOM05D003286 ORTHO05D002463 5.3e-06 56.6 79 38.0
CARHR252240 Cardamine hirsuta HOM05D003286 ORTHO05D002463 6.9e-06 56.2 115 33.9
CARHR252320 Cardamine hirsuta HOM05D003286 ORTHO05D002463 6.9e-06 56.2 79 36.7
TAR624G1349 Trochodendron aralioides HOM05D003286 ORTHO05D002463 9.0e-06 55.8 80 42.5


User provided reference genes

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