Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g06639 Brassica carinata HOM05D005995 ORTHO05D007362 8.1e-70 266.9 132 100.0
BcaB01g04505 Brassica carinata HOM05D005995 ORTHO05D007362 3.8e-51 204.9 161 73.9
BcaNung06849 Brassica carinata HOM05D002227 ORTHO05D007362 7.9e-49 197.2 159 72.3
A03p12120 Brassica napus HOM05D005995 ORTHO05D007362 3.9e-48 194.9 162 70.4
BcaC01g06637 Brassica carinata HOM05D005995 ORTHO05D007362 6.7e-48 194.1 162 70.4
BolC3t13867H Brassica oleracea HOM05D005995 ORTHO05D007362 6.7e-48 194.1 162 70.4
BraA03t10524Z Brassica rapa HOM05D005995 ORTHO05D007362 8.7e-48 193.7 162 70.4
AL8G34810 Arabidopsis lyrata HOM05D005995 ORTHO05D007362 1.5e-39 166.4 163 61.3
AT5G58575 Arabidopsis thaliana HOM05D005995 ORTHO05D007362 1.6e-38 162.9 163 58.9
Sp6g20270 Schrenkiella parvula HOM05D005995 ORTHO05D007362 1.6e-38 162.9 180 56.7
CARHR272410 Cardamine hirsuta HOM05D005995 ORTHO05D007362 2.2e-38 162.5 164 61.6
Carub.0008s1918 Capsella rubella HOM05D005995 ORTHO05D007362 1.1e-37 160.2 163 59.5
Thhalv10014805m.g Eutrema salsugineum HOM05D005995 ORTHO05D007362 5.3e-37 157.9 159 60.4
Aa31LG11G350 Aethionema arabicum HOM05D005995 ORTHO05D007362 7.2e-34 147.5 122 68.0
THA.LOC104799390 Tarenaya hassleriana HOM05D005995 ORTHO05D007362 1.7e-30 136.3 146 54.1
Actinidia23218 Actinidia chinensis HOM05D005995 ORTHO05D007362 3.1e-29 132.1 119 59.7
CANSAT54G2854 Cannabis sativa HOM05D005995 ORTHO05D007362 4.1e-29 131.7 119 58.0
Actinidia02782 Actinidia chinensis HOM05D005995 ORTHO05D007362 1.2e-28 130.2 118 58.5
Haze_24375 Corylus avellana HOM05D005995 ORTHO05D007362 1.5e-28 129.8 120 59.2
Dinv09649 Davidia involucrata HOM05D002227 ORTHO05D002337 3.4e-28 128.6 119 58.0
ECA248G1932 Erigeron canadensis HOM05D005995 ORTHO05D007362 5.9e-28 127.9 117 60.7
Glyma.11G168600 Glycine max HOM05D005995 ORTHO05D007362 5.9e-28 127.9 119 56.3
C03p14210 Brassica napus HOM05D005995 ORTHO05D007362 1.0e-27 127.1 100 71.0
Cc01_g14560 Coffea canephora HOM05D005995 ORTHO05D007362 1.3e-27 126.7 150 50.0
MSTRG.10034 Avicennia marina HOM05D005995 ORTHO05D007362 2.2e-27 125.9 122 58.2
CiPaw.14G056700 Carya illinoinensis HOM05D005995 ORTHO05D007362 2.2e-27 125.9 119 57.1
Manes.17G003200 Manihot esculenta HOM05D005995 ORTHO05D007362 2.2e-27 125.9 119 57.1
Thecc.09G353200 Theobroma cacao HOM05D005995 ORTHO05D007362 2.2e-27 125.9 115 58.3
Cfa011735 Carpinus fangiana HOM05D005995 ORTHO05D007362 2.9e-27 125.6 120 58.3
Aqoxy4G02443 Aquilegia oxysepala HOM05D005995 ORTHO05D007362 3.8e-27 125.2 118 56.8
Potri.009G074400 Populus trichocarpa HOM05D005995 ORTHO05D007362 6.5e-27 124.4 119 58.0
arahy.Tifrunner.gnm1.ann1.SCP5PP Arachis hypogaea HOM05D005995 ORTHO05D007362 8.5e-27 124.0 119 55.5
AUR62023851 Chenopodium quinoa HOM05D005995 ORTHO05D007362 8.5e-27 124.0 117 56.4
Potri.001G279700 Populus trichocarpa HOM05D005995 ORTHO05D007362 8.5e-27 124.0 119 58.0
Rhsim13G0066700 Rhododendron simsii HOM05D005995 ORTHO05D007362 8.5e-27 124.0 105 61.9
ATR0681G053 Amborella trichopoda HOM05D005995 ORTHO05D007362 1.1e-26 123.6 145 49.0
Migut.N00147 Erythranthe guttata HOM05D005995 ORTHO05D007362 1.1e-26 123.6 135 49.6
Nn2g14523 Nelumbo nucifera HOM05D005995 ORTHO05D007362 1.1e-26 123.6 119 55.5
PGR031G2980 Punica granatum HOM05D005995 ORTHO05D007362 1.1e-26 123.6 116 56.9
Sc06g0010410 Simmondsia chinensis HOM05D005995 ORTHO05D007362 1.1e-26 123.6 121 57.0
Sopen06g033540 Solanum pennellii HOM05D005995 ORTHO05D007362 1.1e-26 123.6 120 55.8
PGSC0003DMG400030447 Solanum tuberosum HOM05D005995 ORTHO05D007362 1.1e-26 123.6 120 55.8
vmacro02942 Vaccinium macrocarpon HOM05D005995 ORTHO05D007362 1.1e-26 123.6 105 63.8
Cpa.g.sc2.418 Carica papaya HOM05D005995 ORTHO05D007362 1.4e-26 123.2 119 56.3
Duzib170G0863 Durio zibethinus HOM05D005995 ORTHO05D007362 1.4e-26 123.2 157 47.1
Oeu031050.1 Olea europaea HOM05D005995 ORTHO05D007362 1.4e-26 123.2 122 55.7
QL01p039263 Quercus lobata HOM05D005995 ORTHO05D007362 1.4e-26 123.2 159 48.4
VMungo0540G0986 Vigna mungo HOM05D005995 ORTHO05D007362 1.4e-26 123.2 118 55.1
Solyc06g082160.4 Solanum lycopersicum HOM05D005995 ORTHO05D007362 1.9e-26 122.9 122 55.7
Gohir.A13G233500 Gossypium hirsutum HOM05D005995 ORTHO05D007362 2.5e-26 122.5 116 55.2
MD11G1066600 Malus domestica HOM05D005995 ORTHO05D007362 2.5e-26 122.5 117 58.1
COL.COLO4_11080 Corchorus olitorius HOM05D005995 ORTHO05D007362 3.2e-26 122.1 155 47.7
Glyma.18G060000 Glycine max HOM05D005995 ORTHO05D007362 3.2e-26 122.1 117 53.8
HanXRQChr11g0334701 Helianthus annuus HOM05D005995 ORTHO05D007362 3.2e-26 122.1 122 58.2
Lsat_1_v5_gn_5_173181 Lactuca sativa HOM05D005995 ORTHO05D007362 4.2e-26 121.7 117 54.7
CSS0037016 Camellia sinensis var. sinensis HOM05D005995 ORTHO05D007362 5.5e-26 121.3 161 47.2
CSS0047754 Camellia sinensis var. sinensis HOM05D005995 ORTHO05D007362 5.5e-26 121.3 161 47.2
Phvul.006G070800 Phaseolus vulgaris HOM05D005995 ORTHO05D007362 5.5e-26 121.3 118 54.2
DCAR_015647 Daucus carota HOM05D005995 ORTHO05D007362 7.2e-26 120.9 143 51.0
PSO017G3188 Papaver somniferum HOM05D005995 ORTHO05D007362 7.2e-26 120.9 122 54.9
HPP92_012020 Vanilla planifolia HOM05D005995 ORTHO05D007362 7.2e-26 120.9 121 57.0
Lalb_Chr20g0114841 Lupinus albus HOM05D005995 ORTHO05D007362 9.4e-26 120.6 118 55.1
GSVIVG01024692001 Vitis vinifera HOM05D005995 ORTHO05D007362 9.4e-26 120.6 117 56.4
FvH4_3g39150 Fragaria vesca HOM05D005995 ORTHO05D007362 1.2e-25 120.2 117 53.0
FAN11G1452 Fragaria x ananassa HOM05D005995 ORTHO05D007362 1.2e-25 120.2 117 53.0
Lj6g0019722 Lotus japonicus HOM05D005995 ORTHO05D007362 1.2e-25 120.2 106 57.5
RcHm_v2.0_Chr5g0070551 Rosa chinensis HOM05D005995 ORTHO05D007362 1.2e-25 120.2 117 53.0
Hund06617 Selenicereus undatus HOM05D005995 ORTHO05D007362 1.2e-25 120.2 106 58.5
Ciclev10029374m.g Citrus clementina HOM05D005995 ORTHO05D007362 1.6e-25 119.8 166 44.0
FAN21G0787 Fragaria x ananassa HOM05D005995 ORTHO05D007362 1.6e-25 119.8 117 52.1
FAN25G2223 Fragaria x ananassa HOM05D005995 ORTHO05D007362 1.6e-25 119.8 116 53.4
Prupe.6G053100 Prunus persica HOM05D005995 ORTHO05D007362 1.6e-25 119.8 123 53.7
arahy.Tifrunner.gnm1.ann1.6174C5 Arachis hypogaea HOM05D005995 ORTHO05D007362 2.1e-25 119.4 110 58.2
EL10Ac3g05994 Beta vulgaris HOM05D005995 ORTHO05D007362 2.1e-25 119.4 120 55.0
Lalb_Chr18g0051191 Lupinus albus HOM05D005995 ORTHO05D007362 2.1e-25 119.4 118 54.2
unitig_62.g23487 Utricularia gibba HOM05D005995 ORTHO05D007362 2.1e-25 119.4 115 56.5
MD03G1063100 Malus domestica HOM05D005995 ORTHO05D007362 3.6e-25 118.6 119 58.0
CiPaw.13G073700 Carya illinoinensis HOM05D005995 ORTHO05D007362 4.7e-25 118.2 152 48.0
Duzib168G2258 Durio zibethinus HOM05D005995 ORTHO05D007362 4.7e-25 118.2 160 46.2
Psat0s2070g0120 Pisum sativum HOM05D005995 ORTHO05D007362 4.7e-25 118.2 118 54.2
Sabra09G0056500 Salix brachista HOM05D005995 ORTHO05D007362 6.1e-25 117.9 119 56.3
Atru.chr3.4142 Acer truncatum HOM05D005995 ORTHO05D007362 7.9e-25 117.5 114 56.1
Ca_14969_v3 Cicer arietinum L. HOM05D005995 ORTHO05D007362 7.9e-25 117.5 162 43.2
PSO170G4292 Papaver somniferum HOM05D005995 ORTHO05D007362 7.9e-25 117.5 122 53.3
MBI03_g03955_MAGBIO Magnolia biondii HOM05D005995 ORTHO05D007362 1.0e-24 117.1 118 54.2
SEGI_16655 Sequoiadendron giganteum HOM05D005995 ORTHO05D007362 1.0e-24 117.1 102 61.8
FAN16G3099 Fragaria x ananassa HOM05D005995 ORTHO05D007362 1.4e-24 116.7 140 47.1
Eucgr.B02232 Eucalyptus grandis HOM05D005995 ORTHO05D007362 1.8e-24 116.3 121 52.9
Sabra16G0173300 Salix brachista HOM05D005995 ORTHO05D007362 1.8e-24 116.3 115 56.5
SGA_v2.0_scaffold371G50155 Striga asiatica HOM05D005995 ORTHO05D007362 1.8e-24 116.3 113 56.6
TAR623G0738 Trochodendron aralioides HOM05D005995 ORTHO05D007362 1.8e-24 116.3 117 55.6
CAN.G1095.10 Capsicum annuum HOM05D005995 ORTHO05D007362 2.3e-24 115.9 122 53.3
Nitab4.5_0013485g0010 Nicotiana tabacum HOM05D005995 ORTHO05D007362 3.9e-24 115.2 118 54.2
TAR131G0002 Trochodendron aralioides HOM05D005995 ORTHO05D007362 3.9e-24 115.2 117 54.7
Medtr3g465040 Medicago truncatula HOM05D005995 ORTHO05D007362 5.1e-24 114.8 115 53.0
Lj1P130T21 Lonicera japonica HOM05D005995 ORTHO05D007362 8.8e-24 114.0 100 58.0
TPR.G32896 Trifolium pratense HOM05D005995 ORTHO05D007362 2.0e-23 112.8 168 42.3
Sed0015986 Sechium edule HOM05D005995 ORTHO05D007362 2.6e-23 112.5 119 52.9
Nitab4.5_0002043g0030 Nicotiana tabacum HOM05D005995 ORTHO05D007362 7.4e-23 110.9 149 46.3
TAR633G2447 Trochodendron aralioides HOM05D005995 ORTHO05D007362 7.4e-23 110.9 145 44.1
TWI79G0924 Tripterygium wilfordii HOM05D005995 ORTHO05D007362 1.7e-22 109.8 165 43.6
CDE10G1344 Ceratophyllum demersum HOM05D005995 ORTHO05D007362 2.8e-22 109.0 110 54.5
ClCG03G000500 Citrullus lanatus HOM05D005995 ORTHO05D007362 3.7e-22 108.6 120 51.7
MELO3C020526.2 Cucumis melo HOM05D005995 ORTHO05D007362 3.7e-22 108.6 120 51.7
CsaV3_1G036430 Cucumis sativus L. HOM05D005995 ORTHO05D007362 4.8e-22 108.2 120 50.8
Sed0014404 Sechium edule HOM05D005995 ORTHO05D007362 4.8e-22 108.2 88 65.9
Gohir.D13G239100 Gossypium hirsutum HOM05D005995 ORTHO05D007362 8.2e-22 107.5 116 49.1
Gorai.013G270000 Gossypium raimondii HOM05D005995 ORTHO05D007362 8.2e-22 107.5 116 49.1
MD11G1152800 Malus domestica HOM05D005995 ORTHO05D007362 2.4e-21 105.9 109 52.3
TWI31G1135 Tripterygium wilfordii HOM05D005995 ORTHO05D007362 9.1e-21 104.0 121 49.6
Peaxi162Scf00540g00015 Petunia axillaris HOM05D005995 ORTHO05D007362 2.6e-20 102.4 122 49.2
Gorai.009G112000 Gossypium raimondii HOM05D005995 ORTHO05D007362 3.4e-20 102.1 84 63.1
Mapoly0008s0254 Marchantia polymorpha HOM05D005995 ORTHO05D007362 3.4e-20 102.1 124 49.2
CDE10G0962 Ceratophyllum demersum HOM05D005995 ORTHO05D007362 2.9e-19 99.0 110 51.8
Gohir.A05G107700 Gossypium hirsutum HOM05D005995 ORTHO05D007362 2.9e-19 99.0 83 62.7
Zm00001eb286290 Zea mays HOM05D005995 ORTHO05D007362 3.8e-19 98.6 113 46.0
Pp3c7_14690 Physcomitrium patens HOM05D005995 ORTHO05D007362 1.4e-18 96.7 135 47.4
MD11G1066800 Malus domestica HOM05D005995 ORTHO05D007362 7.2e-18 94.4 103 51.5
Gohir.D05G107900 Gossypium hirsutum HOM05D005995 ORTHO05D007362 2.7e-17 92.4 79 60.8
Os05g0351500 Oryza sativa ssp. japonica HOM05D005995 ORTHO05D007362 6.1e-17 91.3 132 40.2
AagrBONN_evm.TU.Sc2ySwM_344.2127 Anthoceros agrestis HOM05D005995 ORTHO05D007362 8.8e-16 87.4 93 49.5
SMO358G0374 Selaginella moellendorffii HOM05D005995 ORTHO05D007362 2.8e-14 82.4 99 45.5
Pp3c11_11530 Physcomitrium patens HOM05D001687 ORTHO05D001608 5.3e-13 78.2 96 44.8
Actinidia32626 Actinidia chinensis HOM05D005995 ORTHO05D007362 7.7e-12 74.3 79 53.2
AUR62002337 Chenopodium quinoa HOM05D005995 ORTHO05D007362 2.5e-10 69.3 45 66.7
CBR_g49952 Chara braunii HOM05D000019 ORTHO05D000002 2.1e-09 66.2 138 35.5
Cre17.g719550 Chlamydomonas reinhardtii HOM05D005995 ORTHO05D007362 2.6e-07 59.3 44 59.1
HPP92_013780 Vanilla planifolia HOM05D005995 ORTHO05D007362 8.2e-06 54.3 95 37.9


User provided reference genes

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