Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g06637 Brassica carinata HOM05D005995 ORTHO05D007362 1.2e-83 313.2 162 100.0
A03p12120 Brassica napus HOM05D005995 ORTHO05D007362 6.0e-83 310.8 162 98.8
BolC3t13867H Brassica oleracea HOM05D005995 ORTHO05D007362 1.0e-82 310.1 162 98.8
BraA03t10524Z Brassica rapa HOM05D005995 ORTHO05D007362 1.7e-82 309.3 162 98.1
BcaB01g04505 Brassica carinata HOM05D005995 ORTHO05D007362 4.0e-79 298.1 162 95.1
BcaNung06849 Brassica carinata HOM05D002227 ORTHO05D007362 1.6e-75 286.2 162 92.6
Sp6g20270 Schrenkiella parvula HOM05D005995 ORTHO05D007362 3.8e-69 265.0 180 78.9
AL8G34810 Arabidopsis lyrata HOM05D005995 ORTHO05D007362 6.4e-69 264.2 163 85.3
CARHR272410 Cardamine hirsuta HOM05D005995 ORTHO05D007362 1.1e-68 263.5 164 85.4
AT5G58575 Arabidopsis thaliana HOM05D005995 ORTHO05D007362 1.4e-68 263.1 163 83.4
Carub.0008s1918 Capsella rubella HOM05D005995 ORTHO05D007362 4.6e-67 258.1 163 84.0
Thhalv10014805m.g Eutrema salsugineum HOM05D005995 ORTHO05D007362 3.0e-66 255.4 159 84.9
Aa31LG11G350 Aethionema arabicum HOM05D005995 ORTHO05D007362 5.8e-62 241.1 138 88.4
THA.LOC104799390 Tarenaya hassleriana HOM05D005995 ORTHO05D007362 2.8e-56 222.2 167 71.9
Actinidia23218 Actinidia chinensis HOM05D005995 ORTHO05D007362 1.3e-53 213.4 136 77.9
CANSAT54G2854 Cannabis sativa HOM05D005995 ORTHO05D007362 9.3e-52 207.2 134 73.9
Manes.17G003200 Manihot esculenta HOM05D005995 ORTHO05D007362 1.6e-51 206.5 136 75.7
Dinv09649 Davidia involucrata HOM05D002227 ORTHO05D002337 2.7e-51 205.7 136 75.0
Actinidia02782 Actinidia chinensis HOM05D005995 ORTHO05D007362 4.6e-51 204.9 130 76.2
Cc01_g14560 Coffea canephora HOM05D005995 ORTHO05D007362 4.6e-51 204.9 145 71.0
Haze_24375 Corylus avellana HOM05D005995 ORTHO05D007362 4.6e-51 204.9 136 75.0
Glyma.11G168600 Glycine max HOM05D005995 ORTHO05D007362 7.9e-51 204.1 138 73.9
Potri.001G279700 Populus trichocarpa HOM05D005995 ORTHO05D007362 7.9e-51 204.1 141 76.6
Potri.009G074400 Populus trichocarpa HOM05D005995 ORTHO05D007362 1.8e-50 203.0 136 76.5
CiPaw.14G056700 Carya illinoinensis HOM05D005995 ORTHO05D007362 2.3e-50 202.6 136 74.3
Gohir.A13G233500 Gossypium hirsutum HOM05D005995 ORTHO05D007362 6.7e-50 201.1 134 73.9
Rhsim13G0066700 Rhododendron simsii HOM05D005995 ORTHO05D007362 1.1e-49 200.3 128 77.3
Cfa011735 Carpinus fangiana HOM05D005995 ORTHO05D007362 1.5e-49 199.9 136 73.5
CSS0037016 Camellia sinensis var. sinensis HOM05D005995 ORTHO05D007362 1.9e-49 199.5 157 65.6
CSS0047754 Camellia sinensis var. sinensis HOM05D005995 ORTHO05D007362 1.9e-49 199.5 157 65.6
Oeu031050.1 Olea europaea HOM05D005995 ORTHO05D007362 3.3e-49 198.7 145 69.0
ATR0681G053 Amborella trichopoda HOM05D005995 ORTHO05D007362 7.4e-49 197.6 140 71.4
Thecc.09G353200 Theobroma cacao HOM05D005995 ORTHO05D007362 7.4e-49 197.6 159 66.7
VMungo0540G0986 Vigna mungo HOM05D005995 ORTHO05D007362 7.4e-49 197.6 162 63.6
Ciclev10029374m.g Citrus clementina HOM05D005995 ORTHO05D007362 9.7e-49 197.2 149 68.5
Phvul.006G070800 Phaseolus vulgaris HOM05D005995 ORTHO05D007362 9.7e-49 197.2 162 63.6
Sopen06g033540 Solanum pennellii HOM05D005995 ORTHO05D007362 9.7e-49 197.2 151 68.9
PGSC0003DMG400030447 Solanum tuberosum HOM05D005995 ORTHO05D007362 9.7e-49 197.2 151 68.9
QL01p039263 Quercus lobata HOM05D005995 ORTHO05D007362 1.6e-48 196.4 159 66.7
ECA248G1932 Erigeron canadensis HOM05D005995 ORTHO05D007362 2.2e-48 196.1 132 75.0
vmacro02942 Vaccinium macrocarpon HOM05D005995 ORTHO05D007362 2.2e-48 196.1 128 77.3
GSVIVG01024692001 Vitis vinifera HOM05D005995 ORTHO05D007362 2.2e-48 196.1 136 74.3
C03p14210 Brassica napus HOM05D005995 ORTHO05D007362 2.8e-48 195.7 99 99.0
Cpa.g.sc2.418 Carica papaya HOM05D005995 ORTHO05D007362 2.8e-48 195.7 158 65.2
Duzib170G0863 Durio zibethinus HOM05D005995 ORTHO05D007362 3.7e-48 195.3 160 64.4
Aqoxy4G02443 Aquilegia oxysepala HOM05D005995 ORTHO05D007362 4.8e-48 194.9 136 69.9
PSO017G3188 Papaver somniferum HOM05D005995 ORTHO05D007362 4.8e-48 194.9 135 70.4
arahy.Tifrunner.gnm1.ann1.SCP5PP Arachis hypogaea HOM05D005995 ORTHO05D007362 6.3e-48 194.5 136 71.3
AUR62023851 Chenopodium quinoa HOM05D005995 ORTHO05D007362 1.1e-47 193.7 161 62.7
DCAR_015647 Daucus carota HOM05D005995 ORTHO05D007362 1.1e-47 193.7 163 62.6
Ca_14969_v3 Cicer arietinum L. HOM05D005995 ORTHO05D007362 1.4e-47 193.4 161 61.5
Solyc06g082160.4 Solanum lycopersicum HOM05D005995 ORTHO05D007362 1.4e-47 193.4 151 67.5
MSTRG.10034 Avicennia marina HOM05D005995 ORTHO05D007362 1.8e-47 193.0 136 72.1
EL10Ac3g05994 Beta vulgaris HOM05D005995 ORTHO05D007362 1.8e-47 193.0 171 60.2
CiPaw.13G073700 Carya illinoinensis HOM05D005995 ORTHO05D007362 1.8e-47 193.0 155 63.9
Lalb_Chr18g0051191 Lupinus albus HOM05D005995 ORTHO05D007362 1.8e-47 193.0 134 71.6
CAN.G1095.10 Capsicum annuum HOM05D005995 ORTHO05D007362 2.4e-47 192.6 151 65.6
MD11G1066600 Malus domestica HOM05D005995 ORTHO05D007362 2.4e-47 192.6 137 71.5
PSO170G4292 Papaver somniferum HOM05D005995 ORTHO05D007362 2.4e-47 192.6 135 69.6
Eucgr.B02232 Eucalyptus grandis HOM05D005995 ORTHO05D007362 3.1e-47 192.2 139 69.1
Lj6g0019722 Lotus japonicus HOM05D005995 ORTHO05D007362 5.3e-47 191.4 126 74.6
Sabra09G0056500 Salix brachista HOM05D005995 ORTHO05D007362 5.3e-47 191.4 136 72.1
TAR623G0738 Trochodendron aralioides HOM05D005995 ORTHO05D007362 5.3e-47 191.4 158 63.3
BcaC01g06639 Brassica carinata HOM05D005995 ORTHO05D007362 6.9e-47 191.0 162 70.4
Prupe.6G053100 Prunus persica HOM05D005995 ORTHO05D007362 6.9e-47 191.0 136 69.9
Lalb_Chr20g0114841 Lupinus albus HOM05D005995 ORTHO05D007362 1.5e-46 189.9 138 68.8
Hund06617 Selenicereus undatus HOM05D005995 ORTHO05D007362 1.5e-46 189.9 163 60.7
HanXRQChr11g0334701 Helianthus annuus HOM05D005995 ORTHO05D007362 2.0e-46 189.5 137 71.5
COL.COLO4_11080 Corchorus olitorius HOM05D005995 ORTHO05D007362 3.4e-46 188.7 159 65.4
Duzib168G2258 Durio zibethinus HOM05D005995 ORTHO05D007362 3.4e-46 188.7 162 63.0
TAR131G0002 Trochodendron aralioides HOM05D005995 ORTHO05D007362 3.4e-46 188.7 158 62.0
Nn2g14523 Nelumbo nucifera HOM05D005995 ORTHO05D007362 4.5e-46 188.3 164 61.0
MD03G1063100 Malus domestica HOM05D005995 ORTHO05D007362 5.9e-46 188.0 144 68.1
Sc06g0010410 Simmondsia chinensis HOM05D005995 ORTHO05D007362 5.9e-46 188.0 132 73.5
FvH4_3g39150 Fragaria vesca HOM05D005995 ORTHO05D007362 7.7e-46 187.6 138 65.2
FAN11G1452 Fragaria x ananassa HOM05D005995 ORTHO05D007362 7.7e-46 187.6 138 65.2
Medtr3g465040 Medicago truncatula HOM05D005995 ORTHO05D007362 7.7e-46 187.6 132 68.9
Psat0s2070g0120 Pisum sativum HOM05D005995 ORTHO05D007362 1.0e-45 187.2 163 60.7
FAN21G0787 Fragaria x ananassa HOM05D005995 ORTHO05D007362 1.3e-45 186.8 138 64.5
Glyma.18G060000 Glycine max HOM05D005995 ORTHO05D007362 1.3e-45 186.8 153 64.1
Nitab4.5_0013485g0010 Nicotiana tabacum HOM05D005995 ORTHO05D007362 1.3e-45 186.8 151 64.9
RcHm_v2.0_Chr5g0070551 Rosa chinensis HOM05D005995 ORTHO05D007362 1.3e-45 186.8 138 64.5
Sabra16G0173300 Salix brachista HOM05D005995 ORTHO05D007362 2.2e-45 186.0 160 63.8
arahy.Tifrunner.gnm1.ann1.6174C5 Arachis hypogaea HOM05D005995 ORTHO05D007362 5.0e-45 184.9 128 71.9
FAN25G2223 Fragaria x ananassa HOM05D005995 ORTHO05D007362 5.0e-45 184.9 138 65.2
PGR031G2980 Punica granatum HOM05D005995 ORTHO05D007362 6.5e-45 184.5 144 64.6
Gohir.D13G239100 Gossypium hirsutum HOM05D005995 ORTHO05D007362 8.5e-45 184.1 134 68.7
Gorai.013G270000 Gossypium raimondii HOM05D005995 ORTHO05D007362 8.5e-45 184.1 134 68.7
TPR.G32896 Trifolium pratense HOM05D005995 ORTHO05D007362 1.1e-44 183.7 167 59.9
Migut.N00147 Erythranthe guttata HOM05D005995 ORTHO05D007362 5.5e-44 181.4 145 62.8
Lsat_1_v5_gn_5_173181 Lactuca sativa HOM05D005995 ORTHO05D007362 5.5e-44 181.4 128 69.5
FAN16G3099 Fragaria x ananassa HOM05D005995 ORTHO05D007362 1.6e-43 179.9 135 64.4
SGA_v2.0_scaffold371G50155 Striga asiatica HOM05D005995 ORTHO05D007362 1.6e-43 179.9 139 65.5
TAR633G2447 Trochodendron aralioides HOM05D005995 ORTHO05D007362 2.7e-43 179.1 137 66.4
MBI03_g03955_MAGBIO Magnolia biondii HOM05D005995 ORTHO05D007362 4.6e-43 178.3 117 72.6
Atru.chr3.4142 Acer truncatum HOM05D005995 ORTHO05D007362 6.1e-43 177.9 113 75.2
Sed0015986 Sechium edule HOM05D005995 ORTHO05D007362 3.9e-42 175.3 136 66.2
HPP92_012020 Vanilla planifolia HOM05D005995 ORTHO05D007362 3.9e-42 175.3 142 65.5
ClCG03G000500 Citrullus lanatus HOM05D005995 ORTHO05D007362 2.5e-41 172.6 134 66.4
MELO3C020526.2 Cucumis melo HOM05D005995 ORTHO05D007362 7.4e-41 171.0 134 65.7
CDE10G1344 Ceratophyllum demersum HOM05D005995 ORTHO05D007362 9.7e-41 170.6 135 63.7
CsaV3_1G036430 Cucumis sativus L. HOM05D005995 ORTHO05D007362 9.7e-41 170.6 134 64.9
Peaxi162Scf00540g00015 Petunia axillaris HOM05D005995 ORTHO05D007362 9.7e-41 170.6 151 60.9
Nitab4.5_0002043g0030 Nicotiana tabacum HOM05D005995 ORTHO05D007362 3.7e-40 168.7 157 59.2
Lj1P130T21 Lonicera japonica HOM05D005995 ORTHO05D007362 8.2e-40 167.5 106 74.5
MD11G1152800 Malus domestica HOM05D005995 ORTHO05D007362 2.0e-38 162.9 114 68.4
unitig_62.g23487 Utricularia gibba HOM05D005995 ORTHO05D007362 2.6e-38 162.5 131 64.1
TWI79G0924 Tripterygium wilfordii HOM05D005995 ORTHO05D007362 7.7e-38 161.0 166 56.0
SEGI_16655 Sequoiadendron giganteum HOM05D005995 ORTHO05D007362 2.9e-37 159.1 145 58.6
CDE10G0962 Ceratophyllum demersum HOM05D005995 ORTHO05D007362 3.8e-37 158.7 127 63.8
TWI31G1135 Tripterygium wilfordii HOM05D005995 ORTHO05D007362 6.5e-37 157.9 133 63.9
MD11G1066800 Malus domestica HOM05D005995 ORTHO05D007362 1.4e-34 150.2 120 61.7
Mapoly0008s0254 Marchantia polymorpha HOM05D005995 ORTHO05D007362 2.6e-33 146.0 139 56.8
Pp3c7_14690 Physcomitrium patens HOM05D005995 ORTHO05D007362 8.5e-29 131.0 136 55.9
AUR62002337 Chenopodium quinoa HOM05D005995 ORTHO05D007362 1.1e-28 130.6 110 61.8
Zm00001eb286290 Zea mays HOM05D005995 ORTHO05D007362 1.1e-28 130.6 153 49.7
Os05g0351500 Oryza sativa ssp. japonica HOM05D005995 ORTHO05D007362 7.2e-28 127.9 153 46.4
Sed0014404 Sechium edule HOM05D005995 ORTHO05D007362 6.1e-27 124.8 126 56.3
AagrBONN_evm.TU.Sc2ySwM_344.2127 Anthoceros agrestis HOM05D005995 ORTHO05D007362 8.2e-24 114.4 104 53.8
Pp3c11_11530 Physcomitrium patens HOM05D001687 ORTHO05D001608 1.8e-23 113.2 127 48.0
SMO358G0374 Selaginella moellendorffii HOM05D005995 ORTHO05D007362 4.1e-23 112.1 99 56.6
Gohir.A05G107700 Gossypium hirsutum HOM05D005995 ORTHO05D007362 4.5e-22 108.6 151 45.7
Gorai.009G112000 Gossypium raimondii HOM05D005995 ORTHO05D007362 7.2e-20 101.3 110 50.9
MD11G1153100 Malus domestica HOM05D005995 ORTHO05D007362 3.6e-19 99.0 80 63.8
Gohir.D05G107900 Gossypium hirsutum HOM05D005995 ORTHO05D007362 8.0e-19 97.8 151 43.7
HPP92_013780 Vanilla planifolia HOM05D005995 ORTHO05D007362 4.0e-18 95.5 85 58.8
CBR_g49952 Chara braunii HOM05D000019 ORTHO05D000002 1.7e-16 90.1 138 40.6
Actinidia32626 Actinidia chinensis HOM05D005995 ORTHO05D007362 2.8e-16 89.4 65 69.2
Cre17.g719550 Chlamydomonas reinhardtii HOM05D005995 ORTHO05D007362 1.5e-12 77.0 54 63.0
Pp3c4_14820 Physcomitrium patens HOM05D005995 ORTHO05D311899 2.8e-08 62.8 126 37.3
MD11G1071300 Malus domestica HOM05D005995 ORTHO05D007362 3.7e-08 62.4 43 67.4
MCO04G081 Micromonas commoda HOM05D005995 ORTHO05D007362 1.4e-07 60.5 124 36.3
Medtr6g460490 Medicago truncatula HOM05D005995 ORTHO05D007362 7.7e-06 54.7 36 69.4


User provided reference genes

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