Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g06598 Brassica carinata HOM05D002315 ORTHO05D002416 5.1e-27 123.6 61 100.0
BolC3t13695H Brassica oleracea HOM05D002315 ORTHO05D002416 5.1e-27 123.6 61 100.0
C03p12220 Brassica napus HOM05D002315 ORTHO05D002416 2.5e-26 121.3 61 98.4
BcaNung05592 Brassica carinata HOM05D002315 ORTHO05D002416 2.1e-25 118.2 61 95.1
BcaNung05591 Brassica carinata HOM05D002315 ORTHO05D002416 4.8e-25 117.1 61 95.1
AL3G10050 Arabidopsis lyrata HOM05D002315 ORTHO05D002416 1.1e-24 115.9 61 95.1
Sp3g00070 Schrenkiella parvula HOM05D002315 ORTHO05D002416 1.4e-24 115.5 61 91.8
Carub.0003s0005 Capsella rubella HOM05D002315 ORTHO05D002416 1.2e-23 112.5 61 91.8
AT3G02040 Arabidopsis thaliana HOM05D002315 ORTHO05D002416 1.5e-23 112.1 61 91.8
Thhalv10021007m.g Eutrema salsugineum HOM05D002315 ORTHO05D002416 2.6e-23 111.3 61 90.2
CARHR074920 Cardamine hirsuta HOM05D002315 ORTHO05D002416 4.3e-18 94.0 61 80.3
BraSC76t46618Z Brassica rapa HOM05D002315 ORTHO05D002416 5.3e-16 87.0 57 75.4
Aa31LG5G11180 Aethionema arabicum HOM05D002315 ORTHO05D002416 4.5e-15 84.0 63 69.8
GSVIVG01033033001 Vitis vinifera HOM05D002315 ORTHO05D002416 8.5e-14 79.7 58 69.0
CiPaw.03G004400 Carya illinoinensis HOM05D002315 ORTHO05D002416 1.1e-13 79.3 65 67.7
Sabra17G0057400 Salix brachista HOM05D002315 ORTHO05D002416 4.2e-13 77.4 68 61.8
MD17G1010400 Malus domestica HOM05D002315 ORTHO05D002416 9.4e-13 76.3 64 65.6
Potri.001G325200 Populus trichocarpa HOM05D002315 ORTHO05D002416 1.6e-12 75.5 71 57.7
Sabra16G0207700 Salix brachista HOM05D002315 ORTHO05D002416 2.1e-12 75.1 68 58.8
Lj7A613T67 Lonicera japonica HOM05D002315 ORTHO05D002416 2.7e-12 74.7 65 61.5
MBI11_g08323_MAGBIO Magnolia biondii HOM05D002315 ORTHO05D002416 2.7e-12 74.7 71 57.7
RcHm_v2.0_Chr2g0176161 Rosa chinensis HOM05D002315 ORTHO05D002416 2.7e-12 74.7 71 60.6
Ciclev10015568m.g Citrus clementina HOM05D002315 ORTHO05D002416 6.1e-12 73.6 74 58.1
Manes.11G080100 Manihot esculenta HOM05D002315 ORTHO05D002416 6.1e-12 73.6 64 60.9
CSS0017281 Camellia sinensis var. sinensis HOM05D002315 ORTHO05D002416 1.0e-11 72.8 70 58.6
PGR142G4045 Punica granatum HOM05D002315 ORTHO05D002416 1.0e-11 72.8 71 57.7
Actinidia05874 Actinidia chinensis HOM05D002315 ORTHO05D002416 1.8e-11 72.0 70 57.1
CSS0015695 Camellia sinensis var. sinensis HOM05D002315 ORTHO05D002416 1.8e-11 72.0 69 58.0
Rhsim08G0040800 Rhododendron simsii HOM05D002315 ORTHO05D002416 2.3e-11 71.6 70 55.7
MD09G1006500 Malus domestica HOM05D002315 ORTHO05D002416 3.0e-11 71.2 72 56.9
TAR374G1254 Trochodendron aralioides HOM05D002315 ORTHO05D002416 3.0e-11 71.2 69 56.5
Cc07_g01090 Coffea canephora HOM05D002315 ORTHO05D002416 5.1e-11 70.5 63 60.3
Potri.017G063500 Populus trichocarpa HOM05D002315 ORTHO05D002416 6.7e-11 70.1 69 56.5
DCAR_014488 Daucus carota HOM05D002315 ORTHO05D002416 8.8e-11 69.7 70 55.7
FAN05G2616 Fragaria x ananassa HOM05D002315 ORTHO05D002416 8.8e-11 69.7 72 61.1
FAN09G0834 Fragaria x ananassa HOM05D002315 ORTHO05D002416 8.8e-11 69.7 72 61.1
FAN14G5132 Fragaria x ananassa HOM05D002315 ORTHO05D002416 8.8e-11 69.7 72 61.1
CSS0049944 Camellia sinensis var. sinensis HOM05D002315 ORTHO05D002416 1.1e-10 69.3 69 58.0
Haze_14915 Corylus avellana HOM05D002315 ORTHO05D002416 1.1e-10 69.3 64 59.4
Sc07g0003590 Simmondsia chinensis HOM05D002315 ORTHO05D002416 1.1e-10 69.3 71 53.5
vmacro18366 Vaccinium macrocarpon HOM05D002315 ORTHO05D002416 1.1e-10 69.3 63 60.3
CSS0039605 Camellia sinensis var. sinensis HOM05D002315 ORTHO05D002416 1.5e-10 68.9 70 52.9
Cfa007192 Carpinus fangiana HOM05D002315 ORTHO05D002416 1.5e-10 68.9 64 59.4
COL.COLO4_13314 Corchorus olitorius HOM05D002315 ORTHO05D002416 1.5e-10 68.9 76 51.3
FAN02G4142 Fragaria x ananassa HOM05D002315 ORTHO05D002416 1.5e-10 68.9 72 61.1
Hma1.2p1_0525F.1_g172655 Hydrangea macrophylla HOM05D002315 ORTHO05D002416 1.5e-10 68.9 69 55.1
Prupe.3G310500 Prunus persica HOM05D002315 ORTHO05D002416 1.5e-10 68.9 73 56.2
CANSAT64G1557 Cannabis sativa HOM05D002315 ORTHO05D002416 2.0e-10 68.6 71 52.1
FAN16G0732 Fragaria x ananassa HOM05D002315 ORTHO05D002416 2.0e-10 68.6 65 58.5
Gorai.011G087800 Gossypium raimondii HOM05D002315 ORTHO05D002416 2.0e-10 68.6 68 58.8
Actinidia19566 Actinidia chinensis HOM05D002315 ORTHO05D002416 2.6e-10 68.2 71 53.5
Dinv33306 Davidia involucrata HOM05D002315 ORTHO05D002416 2.6e-10 68.2 69 53.6
Gohir.A10G070400 Gossypium hirsutum HOM05D002315 ORTHO05D002416 2.6e-10 68.2 68 58.8
Gohir.D10G080700 Gossypium hirsutum HOM05D002315 ORTHO05D002416 2.6e-10 68.2 68 58.8
Sed0025232 Sechium edule HOM05D002315 ORTHO05D002416 2.6e-10 68.2 75 54.7
Dinv25635 Davidia involucrata HOM05D002315 ORTHO05D002416 3.3e-10 67.8 72 51.4
THA.LOC104822422 Tarenaya hassleriana HOM05D002315 ORTHO05D002416 3.3e-10 67.8 62 58.1
AUR62029437 Chenopodium quinoa HOM05D002315 ORTHO05D002416 4.4e-10 67.4 64 56.2
Ca_08112_v3 Cicer arietinum L. HOM05D002315 ORTHO05D002416 4.4e-10 67.4 69 52.2
FAN25G1609 Fragaria x ananassa HOM05D002315 ORTHO05D002416 4.4e-10 67.4 65 60.0
Oeu035363.1 Olea europaea HOM05D002315 ORTHO05D002416 4.4e-10 67.4 66 57.6
vmacro05982 Vaccinium macrocarpon HOM05D002315 ORTHO05D002416 4.4e-10 67.4 69 55.1
Duzib147G1329 Durio zibethinus HOM05D002315 ORTHO05D002416 5.7e-10 67.0 72 52.8
Duzib264G0534 Durio zibethinus HOM05D002315 ORTHO05D002416 5.7e-10 67.0 72 51.4
Duzib264G0943 Durio zibethinus HOM05D002315 ORTHO05D002416 5.7e-10 67.0 72 51.4
Eucgr.I01620 Eucalyptus grandis HOM05D002315 ORTHO05D002416 5.7e-10 67.0 68 54.4
Manes.04G089800 Manihot esculenta HOM05D002315 ORTHO05D002416 5.7e-10 67.0 61 59.0
Ah.03g148300 Amaranthus hybridus HOM05D002315 ORTHO05D002416 7.4e-10 66.6 65 55.4
AUR62003390 Chenopodium quinoa HOM05D002315 ORTHO05D002416 7.4e-10 66.6 64 56.2
Psat3g095320 Pisum sativum HOM05D002315 ORTHO05D002416 7.4e-10 66.6 68 54.4
Glyma.16G052000 Glycine max HOM05D002315 ORTHO05D002416 9.7e-10 66.2 69 53.6
TAR629G2302 Trochodendron aralioides HOM05D002315 ORTHO05D002416 9.7e-10 66.2 69 52.2
Cpa.g.sc70.105 Carica papaya HOM05D002315 ORTHO05D002416 1.3e-09 65.9 73 54.8
MELO3C014925.2 Cucumis melo HOM05D002315 ORTHO05D002416 1.3e-09 65.9 76 53.9
Migut.F00032 Erythranthe guttata HOM05D002315 ORTHO05D002416 1.3e-09 65.9 71 56.3
Medtr7g083410 Medicago truncatula HOM05D002315 ORTHO05D002416 1.3e-09 65.9 65 53.8
Rhsim10G0003500 Rhododendron simsii HOM05D002315 ORTHO05D002416 1.3e-09 65.9 70 54.3
Hund25489 Selenicereus undatus HOM05D002315 ORTHO05D002416 1.3e-09 65.9 72 51.4
PGSC0003DMG403020240 Solanum tuberosum HOM05D002315 ORTHO05D002416 1.3e-09 65.9 63 55.6
CAN.G473.142 Capsicum annuum HOM05D002315 ORTHO05D002416 1.7e-09 65.5 67 53.7
FAN21G0248 Fragaria x ananassa HOM05D002315 ORTHO05D002416 1.7e-09 65.5 65 58.5
Lj1g0005344 Lotus japonicus HOM05D002315 ORTHO05D002416 1.7e-09 65.5 71 50.7
Thecc.04G042400 Theobroma cacao HOM05D002315 ORTHO05D002416 1.7e-09 65.5 69 53.6
Eucgr.B03536 Eucalyptus grandis HOM05D002315 ORTHO05D002416 2.2e-09 65.1 65 53.8
Peaxi162Scf00420g00727 Petunia axillaris HOM05D002315 ORTHO05D002416 2.2e-09 65.1 68 55.9
Solyc02g094400.4 Solanum lycopersicum HOM05D002315 ORTHO05D002416 2.2e-09 65.1 65 53.8
Sopen02g039050 Solanum pennellii HOM05D002315 ORTHO05D002416 2.2e-09 65.1 65 53.8
CsaV3_3G026730 Cucumis sativus L. HOM05D002315 ORTHO05D002416 2.8e-09 64.7 77 51.9
Hund17435 Selenicereus undatus HOM05D002315 ORTHO05D002416 2.8e-09 64.7 71 53.5
TPR.G5723 Trifolium pratense HOM05D002315 ORTHO05D002416 2.8e-09 64.7 70 50.0
ClCG05G013890 Citrullus lanatus HOM05D002315 ORTHO05D002416 3.7e-09 64.3 73 53.4
Duzib187G0133 Durio zibethinus HOM05D002315 ORTHO05D002416 3.7e-09 64.3 72 52.8
HPP92_021629 Vanilla planifolia HOM05D002315 ORTHO05D002416 3.7e-09 64.3 76 48.7
Nitab4.5_0000519g0150 Nicotiana tabacum HOM05D002315 ORTHO05D002416 4.8e-09 63.9 67 53.7
Oeu020396.1 Olea europaea HOM05D002315 ORTHO05D002416 4.8e-09 63.9 61 57.4
EL10Ac6g15455 Beta vulgaris HOM05D002315 ORTHO05D002416 6.3e-09 63.5 65 53.8
Gohir.D07G238600 Gossypium hirsutum HOM05D002315 ORTHO05D002416 6.3e-09 63.5 65 53.8
SalBow4G0363 Salvia bowleyana HOM05D002315 ORTHO05D002416 6.3e-09 63.5 72 51.4
SalBow4G2531 Salvia bowleyana HOM05D002315 ORTHO05D002416 6.3e-09 63.5 72 51.4
TWI34G0595 Tripterygium wilfordii HOM05D002315 ORTHO05D002416 6.3e-09 63.5 66 53.0
TWI60G1464 Tripterygium wilfordii HOM05D002315 ORTHO05D002416 6.3e-09 63.5 66 53.0
VMungo1383G2624 Vigna mungo HOM05D002315 ORTHO05D002416 6.3e-09 63.5 69 53.6
Glyma.19G098500 Glycine max HOM05D002315 ORTHO05D002416 8.2e-09 63.2 69 50.7
Gohir.A07G231400 Gossypium hirsutum HOM05D002315 ORTHO05D002416 8.2e-09 63.2 65 52.3
Gorai.001G274600 Gossypium raimondii HOM05D002315 ORTHO05D002416 8.2e-09 63.2 65 52.3
Nn3g16350 Nelumbo nucifera HOM05D002315 ORTHO05D002416 8.2e-09 63.2 70 51.4
QL02p070511 Quercus lobata HOM05D002315 ORTHO05D002416 8.2e-09 63.2 64 54.7
arahy.Tifrunner.gnm1.ann1.JGYC2J Arachis hypogaea HOM05D002315 ORTHO05D002416 1.8e-08 62.0 74 47.3
arahy.Tifrunner.gnm1.ann1.M6NE4G Arachis hypogaea HOM05D002315 ORTHO05D002416 1.8e-08 62.0 74 47.3
Zm00001eb241920 Zea mays HOM05D002315 ORTHO05D002416 1.8e-08 62.0 71 50.7
Phvul.001G091000 Phaseolus vulgaris HOM05D002315 ORTHO05D002416 2.4e-08 61.6 69 50.7
CDE05G3060 Ceratophyllum demersum HOM05D002315 ORTHO05D002416 3.1e-08 61.2 67 50.7
DCAR_000946 Daucus carota HOM05D002315 ORTHO05D002416 3.1e-08 61.2 64 54.7
HPP92_021687 Vanilla planifolia HOM05D002315 ORTHO05D002416 3.1e-08 61.2 76 47.4
Sed0022539 Sechium edule HOM05D002315 ORTHO05D002416 4.1e-08 60.8 74 50.0
Aqoxy5G03238 Aquilegia oxysepala HOM05D002315 ORTHO05D002416 5.3e-08 60.5 70 52.9
arahy.Tifrunner.gnm1.ann1.E110XT Arachis hypogaea HOM05D002315 ORTHO05D002416 5.3e-08 60.5 60 56.7
Lalb_Chr10g0094321 Lupinus albus HOM05D002315 ORTHO05D002416 5.3e-08 60.5 69 50.7
PGR102G2264 Punica granatum HOM05D002315 ORTHO05D002416 6.9e-08 60.1 73 46.6
arahy.Tifrunner.gnm1.ann1.0PNZ7T Arachis hypogaea HOM05D002315 ORTHO05D002416 9.1e-08 59.7 60 56.7
Lalb_Chr10g0094471 Lupinus albus HOM05D002315 ORTHO05D002416 1.2e-07 59.3 69 50.7
Lalb_Chr10g0094481 Lupinus albus HOM05D002315 ORTHO05D002416 1.2e-07 59.3 69 50.7
Lalb_Chr22g0360161 Lupinus albus HOM05D002315 ORTHO05D002416 1.5e-07 58.9 67 50.7
THA.LOC104814200 Tarenaya hassleriana HOM05D002315 ORTHO05D002416 1.5e-07 58.9 61 54.1
unitig_748.g7001 Utricularia gibba HOM05D002315 ORTHO05D002416 1.5e-07 58.9 58 53.4
Aqoxy3G01699 Aquilegia oxysepala HOM05D002315 ORTHO05D002416 2.0e-07 58.5 71 47.9
Thhalv10027797m.g Eutrema salsugineum HOM05D002315 ORTHO05D002416 3.4e-07 57.8 74 47.3
Os02g0514500 Oryza sativa ssp. japonica HOM05D002315 ORTHO05D002416 3.4e-07 57.8 68 48.5
Potri.001G061100 Populus trichocarpa HOM05D002315 ORTHO05D002416 3.4e-07 57.8 70 51.4
THA.LOC104805317 Tarenaya hassleriana HOM05D002315 ORTHO05D002416 3.4e-07 57.8 71 46.5
CANSAT56G0347 Cannabis sativa HOM05D002315 ORTHO05D002416 4.5e-07 57.4 59 52.5
AUR62005680 Chenopodium quinoa HOM05D002315 ORTHO05D002416 4.5e-07 57.4 73 46.6
Gorai.005G195200 Gossypium raimondii HOM05D002315 ORTHO05D002416 4.5e-07 57.4 68 48.5
PSO017G1256 Papaver somniferum HOM05D002315 ORTHO05D002416 4.5e-07 57.4 77 42.9
Sp7g00820 Schrenkiella parvula HOM05D002315 ORTHO05D002416 4.5e-07 57.4 74 47.3
BcaB06g27593 Brassica carinata HOM05D002315 ORTHO05D002416 5.9e-07 57.0 71 47.9
COL.COLO4_13218 Corchorus olitorius HOM05D002315 ORTHO05D002416 5.9e-07 57.0 70 48.6
FAN11G2519 Fragaria x ananassa HOM05D002315 ORTHO05D002416 5.9e-07 57.0 58 55.2
Gohir.A03G150600 Gossypium hirsutum HOM05D002315 ORTHO05D002416 5.9e-07 57.0 68 47.1
BcaB02g07911 Brassica carinata HOM05D002315 ORTHO05D002416 7.7e-07 56.6 72 47.2
Gohir.D02G173500 Gossypium hirsutum HOM05D002315 ORTHO05D002416 7.7e-07 56.6 68 48.5
THA.LOC104825641 Tarenaya hassleriana HOM05D002315 ORTHO05D002416 7.7e-07 56.6 83 41.0
CARHR213290 Cardamine hirsuta HOM05D002315 ORTHO05D002416 1.0e-06 56.2 69 47.8
Hund06116 Selenicereus undatus HOM05D002315 ORTHO05D002416 1.3e-06 55.8 74 47.3
AT5G41080 Arabidopsis thaliana HOM05D002315 ORTHO05D002416 1.7e-06 55.5 71 46.5
BcaC08g44506 Brassica carinata HOM05D002315 ORTHO05D002416 1.7e-06 55.5 72 44.4
A04p14130 Brassica napus HOM05D002315 ORTHO05D002416 1.7e-06 55.5 72 45.8
C04p48170 Brassica napus HOM05D002315 ORTHO05D002416 1.7e-06 55.5 72 45.8
C06p19580 Brassica napus HOM05D002315 ORTHO05D002416 1.7e-06 55.5 72 44.4
BolC4t26407H Brassica oleracea HOM05D002315 ORTHO05D002416 1.7e-06 55.5 72 45.8
BolC6t37151H Brassica oleracea HOM05D002315 ORTHO05D002416 1.7e-06 55.5 72 44.4
BraA04t17074Z Brassica rapa HOM05D002315 ORTHO05D002416 1.7e-06 55.5 72 45.8
PSO478G2871 Papaver somniferum HOM05D002315 ORTHO05D002416 1.7e-06 55.5 76 42.1
A07p20660 Brassica napus HOM05D002315 ORTHO05D002416 2.2e-06 55.1 72 45.8
BraA07t29757Z Brassica rapa HOM05D002315 ORTHO05D002416 2.2e-06 55.1 72 45.8
Aa31LG9G790 Aethionema arabicum HOM05D002315 ORTHO05D002416 3.8e-06 54.3 77 44.2
ATR0582G375 Amborella trichopoda HOM05D002315 ORTHO05D002416 5.0e-06 53.9 69 47.8
Lalb_Chr14g0363761 Lupinus albus HOM05D002315 ORTHO05D002416 5.0e-06 53.9 67 46.3
QL03p050787 Quercus lobata HOM05D002315 ORTHO05D002416 5.0e-06 53.9 70 45.7
TWI36G1103 Tripterygium wilfordii HOM05D002315 ORTHO05D002416 6.5e-06 53.5 70 44.3
PSO017G4105 Papaver somniferum HOM05D002315 ORTHO05D002416 8.5e-06 53.1 79 43.0


User provided reference genes

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