Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g06414 Brassica carinata HOM05D004098 ORTHO05D005215 0.0e+00 1204.1 732 100.0
C03p15880 Brassica napus HOM05D004098 ORTHO05D005215 0.0e+00 1195.6 732 98.5
BolC3t14019H Brassica oleracea HOM05D004098 ORTHO05D005215 0.0e+00 1188.7 757 93.5
A03p13590 Brassica napus HOM05D004098 ORTHO05D005215 0.0e+00 1182.2 732 98.6
BcaB01g04390 Brassica carinata HOM05D004098 ORTHO05D005215 0.0e+00 1165.2 732 96.2
BraA03t10663Z Brassica rapa HOM05D004098 ORTHO05D005215 0.0e+00 1161.0 759 85.4
Sp6g18140 Schrenkiella parvula HOM05D004098 ORTHO05D005215 0.0e+00 1115.9 732 93.0
AL8G31920 Arabidopsis lyrata HOM05D004098 ORTHO05D005215 0.0e+00 1089.7 732 90.6
Thhalv10012791m.g Eutrema salsugineum HOM05D004098 ORTHO05D005215 0.0e+00 1086.6 732 91.0
AT5G56290 Arabidopsis thaliana HOM05D004098 ORTHO05D005215 0.0e+00 1085.5 732 90.7
A10p13580 Brassica napus HOM05D004098 ORTHO05D005215 0.0e+00 1083.9 733 91.7
BraA10t43460Z Brassica rapa HOM05D004098 ORTHO05D005215 0.0e+00 1077.8 770 85.7
CARHR269690 Cardamine hirsuta HOM05D004098 ORTHO05D005215 5.0e-312 1074.7 732 88.1
BolC9t57610H Brassica oleracea HOM05D004098 ORTHO05D005215 6.5e-310 1067.0 735 89.7
Carub.0008s1661 Capsella rubella HOM05D004098 ORTHO05D005215 2.2e-302 1042.0 732 88.3
C09p47570 Brassica napus HOM05D004098 ORTHO05D005215 7.9e-300 1033.5 734 88.6
Aa31LG3G12200 Aethionema arabicum HOM05D004098 ORTHO05D005215 5.9e-295 1017.3 735 87.1
THA.LOC104813473 Tarenaya hassleriana HOM05D004098 ORTHO05D005215 5.5e-285 984.2 735 82.0
BcaC04g20111 Brassica carinata HOM05D004098 ORTHO05D005215 3.0e-275 951.8 735 79.9
BcaB05g22257 Brassica carinata HOM05D004098 ORTHO05D005215 8.2e-273 943.7 785 77.7
Manes.01G008000 Manihot esculenta HOM05D004098 ORTHO05D005215 1.9e-237 826.2 749 69.4
MD11G1047800 Malus domestica HOM05D004098 ORTHO05D005215 3.3e-237 825.5 752 70.1
Gohir.A04G000400 Gossypium hirsutum HOM05D004098 ORTHO05D005215 6.2e-236 821.2 748 73.0
Gohir.D05G388750 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.8e-235 819.7 748 72.9
COL.COLO4_07798 Corchorus olitorius HOM05D004098 ORTHO05D005215 3.1e-235 818.9 739 71.4
Gorai.009G455400 Gossypium raimondii HOM05D004098 ORTHO05D005215 4.0e-235 818.5 749 72.9
Gohir.D05G388800 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.2e-234 817.0 749 72.8
Prupe.6G036900 Prunus persica HOM05D004098 ORTHO05D005215 4.4e-234 815.1 754 69.6
Ciclev10007566m.g Citrus clementina HOM05D004098 ORTHO05D005215 9.9e-234 813.9 748 69.5
MD03G1045600 Malus domestica HOM05D004098 ORTHO05D005215 1.2e-231 807.0 750 69.5
TWI14G0432 Tripterygium wilfordii HOM05D004098 ORTHO05D005215 3.0e-230 802.4 751 71.2
TWI39G0299 Tripterygium wilfordii HOM05D004098 ORTHO05D005215 3.0e-230 802.4 751 71.2
Manes.05G203450 Manihot esculenta HOM05D004098 ORTHO05D005215 1.4e-227 793.5 753 69.3
Dinv19633 Davidia involucrata HOM05D004098 ORTHO05D005215 2.6e-226 789.3 761 69.6
Potri.011G170000 Populus trichocarpa HOM05D004098 ORTHO05D005215 5.8e-226 788.1 753 68.3
Atru.chr2.3913 Acer truncatum HOM05D004098 ORTHO05D005215 2.9e-225 785.8 632 66.0
arahy.Tifrunner.gnm1.ann1.FI1VU9 Arachis hypogaea HOM05D004098 ORTHO05D005215 1.4e-224 783.5 752 68.6
Thecc.07G000300 Theobroma cacao HOM05D004098 ORTHO05D005215 9.2e-224 780.8 745 68.5
Dinv42526 Davidia involucrata HOM05D004098 ORTHO05D005215 1.2e-223 780.4 643 64.7
Rhsim04G0006500 Rhododendron simsii HOM05D004098 ORTHO05D005215 1.2e-223 780.4 797 54.7
Duzib268G0918 Durio zibethinus HOM05D004098 ORTHO05D005215 3.5e-223 778.9 746 68.2
PGR083G2418 Punica granatum HOM05D004098 ORTHO05D005215 4.6e-223 778.5 747 68.1
CANSAT11G1316 Cannabis sativa HOM05D004098 ORTHO05D005215 7.8e-223 777.7 761 68.3
TAR626G1397 Trochodendron aralioides HOM05D004098 ORTHO05D005215 6.6e-222 774.6 768 66.7
GSVIVG01014864001 Vitis vinifera HOM05D004098 ORTHO05D005215 2.5e-221 772.7 748 68.3
Solyc10g005650.3 Solanum lycopersicum HOM05D004098 ORTHO05D005215 1.4e-219 766.9 752 69.8
arahy.Tifrunner.gnm1.ann1.36GALV Arachis hypogaea HOM05D004098 ORTHO05D005215 2.4e-219 766.1 774 66.1
Phvul.005G006500 Phaseolus vulgaris HOM05D004098 ORTHO05D005215 2.4e-219 766.1 741 66.9
Lj3g0001916 Lotus japonicus HOM05D004098 ORTHO05D005215 3.1e-219 765.8 745 66.4
Sopen10g001620 Solanum pennellii HOM05D004098 ORTHO05D005215 5.3e-219 765.0 752 69.8
Cfa016972 Carpinus fangiana HOM05D004098 ORTHO05D005215 1.2e-218 763.8 757 67.1
Oeu052018.2 Olea europaea HOM05D004098 ORTHO05D005215 1.2e-218 763.8 775 65.3
PGSC0003DMG400011237 Solanum tuberosum HOM05D004098 ORTHO05D005215 1.2e-218 763.8 754 69.4
FAN21G3119 Fragaria x ananassa HOM05D004098 ORTHO05D005215 2.0e-218 763.1 754 68.0
FAN16G0876 Fragaria x ananassa HOM05D004098 ORTHO05D005215 2.6e-218 762.7 754 68.0
Glyma.04G116700 Glycine max HOM05D004098 ORTHO05D005215 2.2e-217 759.6 744 67.1
FvH4_3g41350 Fragaria vesca HOM05D004098 ORTHO05D005215 6.4e-217 758.1 754 68.0
Potri.001G473100 Populus trichocarpa HOM05D004098 ORTHO05D005215 8.4e-217 757.7 751 66.3
Sabra11G0137000 Salix brachista HOM05D004098 ORTHO05D005215 1.1e-216 757.3 826 63.0
FAN11G1160 Fragaria x ananassa HOM05D004098 ORTHO05D005215 1.4e-216 756.9 754 67.9
Actinidia37106 Actinidia chinensis HOM05D004098 ORTHO05D005215 2.4e-216 756.1 760 66.1
VMungo1080G0600 Vigna mungo HOM05D004098 ORTHO05D005215 3.2e-216 755.7 743 66.6
Hma1.2p1_0321F.1_g124430 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 4.2e-216 755.4 747 68.4
Migut.M01572 Erythranthe guttata HOM05D004098 ORTHO05D005215 7.1e-216 754.6 747 68.5
Glyma.06G320100 Glycine max HOM05D004098 ORTHO05D005215 7.1e-216 754.6 743 66.8
Aqoxy4G02276 Aquilegia oxysepala HOM05D004098 ORTHO05D005215 2.7e-215 752.7 760 65.3
CiPaw.11G211200 Carya illinoinensis HOM05D004098 ORTHO05D005215 2.7e-215 752.7 762 66.1
Peaxi162Scf00018g00064 Petunia axillaris HOM05D004098 ORTHO05D005215 3.5e-215 752.3 787 63.7
Lalb_Chr15g0079811 Lupinus albus HOM05D004098 ORTHO05D005215 1.0e-214 750.7 755 66.4
RcHm_v2.0_Chr5g0074241 Rosa chinensis HOM05D004098 ORTHO05D005215 5.1e-214 748.4 766 67.6
FAN25G0546 Fragaria x ananassa HOM05D004098 ORTHO05D005215 1.9e-213 746.5 778 65.8
Medtr3g009230 Medicago truncatula HOM05D004098 ORTHO05D005215 2.5e-213 746.1 754 67.9
Eucgr.F01979 Eucalyptus grandis HOM05D004098 ORTHO05D005215 7.3e-213 744.6 743 65.7
Nn2g14376 Nelumbo nucifera HOM05D004098 ORTHO05D005215 9.6e-213 744.2 762 66.1
DCAR_016814 Daucus carota HOM05D004098 ORTHO05D005215 1.1e-211 740.7 776 63.7
Psat5g230760 Pisum sativum HOM05D004098 ORTHO05D005215 1.8e-211 740.0 754 66.6
Cc05_g15840 Coffea canephora HOM05D004098 ORTHO05D005215 3.1e-211 739.2 745 67.0
CsaV3_3G003580 Cucumis sativus L. HOM05D004098 ORTHO05D005215 6.9e-211 738.0 754 68.6
PSO675G3414 Papaver somniferum HOM05D004098 ORTHO05D005215 1.5e-210 736.9 769 63.3
Nitab4.5_0000611g0190 Nicotiana tabacum HOM05D004098 ORTHO05D005215 2.0e-210 736.5 787 54.6
MELO3C014028.2 Cucumis melo HOM05D004098 ORTHO05D005215 2.6e-210 736.1 754 68.6
PSO541G4185 Papaver somniferum HOM05D004098 ORTHO05D005215 3.4e-210 735.7 769 63.3
Sc03g0011840 Simmondsia chinensis HOM05D004098 ORTHO05D005215 2.2e-209 733.0 760 63.4
Ca_14121_v3 Cicer arietinum L. HOM05D004098 ORTHO05D005215 3.8e-209 732.3 749 67.4
SalBow8G2465 Salvia bowleyana HOM05D004098 ORTHO05D005215 6.4e-209 731.5 767 64.3
MSTRG.16125 Avicennia marina HOM05D004098 ORTHO05D005215 1.4e-208 730.3 752 65.8
Lj8C185G3 Lonicera japonica HOM05D004098 ORTHO05D005215 5.4e-208 728.4 845 59.4
QL08p000136 Quercus lobata HOM05D004098 ORTHO05D005215 4.6e-207 725.3 762 66.3
Lalb_Chr18g0048751 Lupinus albus HOM05D004098 ORTHO05D005215 3.9e-206 722.2 763 64.4
TPR.G16705 Trifolium pratense HOM05D004098 ORTHO05D005215 3.9e-206 722.2 643 63.8
HanXRQChr05g0160701 Helianthus annuus HOM05D004098 ORTHO05D005215 5.3e-203 711.8 744 67.2
Nitab4.5_0004488g0010 Nicotiana tabacum HOM05D004098 ORTHO05D005215 2.5e-200 703.0 791 62.1
ECA246G1615 Erigeron canadensis HOM05D004098 ORTHO05D005215 3.2e-200 702.6 741 66.9
ClCG10G003580 Citrullus lanatus HOM05D004098 ORTHO05D005215 7.1e-200 701.4 841 61.4
DCAR_019936 Daucus carota HOM05D004098 ORTHO05D005215 9.3e-200 701.0 791 54.6
CSS0008075 Camellia sinensis var. sinensis HOM05D004098 ORTHO05D005215 2.1e-199 699.9 684 69.4
Lsat_1_v5_gn_5_241 Lactuca sativa HOM05D004098 ORTHO05D005215 6.0e-199 698.4 758 64.5
AUR62043123 Chenopodium quinoa HOM05D004098 ORTHO05D005215 6.2e-196 688.3 750 63.5
CAN.G492.64 Capsicum annuum HOM05D004098 ORTHO05D005215 3.1e-195 686.0 753 63.1
unitig_749.g13703 Utricularia gibba HOM05D004098 ORTHO05D005215 2.1e-191 673.3 778 60.5
EL10Ac4g07494 Beta vulgaris HOM05D004098 ORTHO05D005215 3.9e-182 642.5 753 62.8
Haze_09929 Corylus avellana HOM05D004098 ORTHO05D005215 2.2e-177 626.7 788 57.5
SGA_v2.0_scaffold7G03562 Striga asiatica HOM05D004098 ORTHO05D005215 4.2e-176 622.5 811 58.1
MSTRG.7048 Avicennia marina HOM05D004098 ORTHO05D005215 3.8e-169 599.4 755 57.7
Actinidia35440 Actinidia chinensis HOM05D004098 ORTHO05D005215 6.1e-167 592.0 604 55.6
Sed0000599 Sechium edule HOM05D004098 ORTHO05D005215 3.9e-166 589.3 565 62.1
ATR0751G081 Amborella trichopoda HOM05D004098 ORTHO05D005215 4.7e-159 565.8 721 59.4
ClCG00G000320 Citrullus lanatus HOM05D004098 ORTHO05D005215 1.6e-154 550.8 543 61.0
Mapoly0064s0022 Marchantia polymorpha HOM05D004098 ORTHO05D005215 1.1e-152 544.7 765 53.7
Hma1.2p1_0321F.1_g124440 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 2.5e-152 543.5 551 68.8
Pp3c14_5170 Physcomitrium patens HOM05D004098 ORTHO05D005215 3.2e-152 543.1 774 55.4
Zm00001eb199560 Zea mays HOM05D004098 ORTHO05D005215 1.0e-142 511.5 755 55.8
SMO361G0081 Selaginella moellendorffii HOM05D004098 ORTHO05D005215 9.8e-141 505.0 773 54.2
Os08g0500100 Oryza sativa ssp. japonica HOM05D004098 ORTHO05D005215 2.2e-140 503.8 756 54.4
HPP92_017855 Vanilla planifolia HOM05D004098 ORTHO05D005215 9.2e-139 498.4 454 61.5
Zm00001eb034080 Zea mays HOM05D004098 ORTHO05D005215 3.5e-138 496.5 756 55.2
vmacro09792 Vaccinium macrocarpon HOM05D004098 ORTHO05D005215 5.1e-113 412.9 441 53.7
SEGI_20896 Sequoiadendron giganteum HOM05D004098 ORTHO05D005215 7.3e-112 409.1 443 52.6
CBR_g45681 Chara braunii HOM05D004098 ORTHO05D005215 6.2e-111 406.0 606 43.4
AUR62017765 Chenopodium quinoa HOM05D004098 ORTHO05D005215 7.1e-99 365.9 383 55.6
BolC2t07653H Brassica oleracea HOM05D004098 ORTHO05D005215 1.7e-97 361.3 483 48.7
Ah.04g164860 Amaranthus hybridus HOM05D004098 ORTHO05D005215 3.2e-91 340.5 311 81.4
AUR62017764 Chenopodium quinoa HOM05D004098 ORTHO05D005215 1.0e-89 335.5 341 76.5
CDE05G2641 Ceratophyllum demersum HOM05D004098 ORTHO05D005215 5.1e-89 333.2 320 80.6
Ah.04g164850 Amaranthus hybridus HOM05D000499 ORTHO05D002036 2.6e-85 320.9 380 52.4
vmacro09791 Vaccinium macrocarpon HOM05D004098 ORTHO05D005215 2.6e-85 320.9 304 81.6
C02p15370 Brassica napus HOM05D004098 ORTHO05D005215 7.9e-82 309.3 477 44.2
CDE05G2368 Ceratophyllum demersum HOM05D004098 ORTHO05D005215 2.5e-72 277.7 333 49.5
Cpa.g.sc12.52 Carica papaya HOM05D004098 ORTHO05D005215 5.3e-70 270.0 192 65.6
Cre14.g616750 Chlamydomonas reinhardtii HOM05D004098 ORTHO05D005215 1.9e-67 261.5 747 33.1
MCO05G026 Micromonas commoda HOM05D004098 ORTHO05D005215 6.7e-65 253.1 849 38.4
Gohir.A13G000950 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.7e-55 221.9 126 85.7
PRCOL_00000784 Prasinoderma coloniale HOM05D004098 ORTHO05D005215 6.5e-52 209.9 708 29.4
Gohir.A04G000600 Gossypium hirsutum HOM05D004098 ORTHO05D005215 5.3e-46 190.3 181 58.6
Gohir.A06G201500 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.2e-39 168.3 98 84.7
Gohir.1Z049490 Gossypium hirsutum HOM05D004098 ORTHO05D005215 8.3e-39 166.4 90 87.8
Cpa.g.sc12.51 Carica papaya HOM05D004098 ORTHO05D005215 3.2e-35 154.5 99 74.7
Gohir.A03G000002 Gossypium hirsutum HOM05D004098 ORTHO05D005215 4.7e-34 150.6 226 42.5
Gorai.009G455200 Gossypium raimondii HOM05D004098 ORTHO05D005215 1.8e-33 148.7 226 44.2
A02p09220 Brassica napus HOM05D004098 ORTHO05D005215 9.8e-32 142.9 93 82.8
Gohir.A12G000850 Gossypium hirsutum HOM05D004098 ORTHO05D005215 8.3e-31 139.8 226 40.7
Gohir.A08G253600 Gossypium hirsutum HOM05D004098 ORTHO05D005215 5.4e-30 137.1 76 88.2
Gohir.A11G000300 Gossypium hirsutum HOM05D004098 ORTHO05D005215 7.0e-30 136.7 84 81.0
Gohir.A01G000401 Gossypium hirsutum HOM05D004098 ORTHO05D005215 6.6e-28 130.2 83 74.7
Lsat_1_v5_gn_8_35540 Lactuca sativa HOM05D004098 ORTHO05D005215 4.7e-26 124.0 167 48.5
Gohir.A03G000007 Gossypium hirsutum HOM05D004098 ORTHO05D005215 6.1e-26 123.6 66 84.8
Gohir.1Z049406 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.8e-25 122.1 103 61.2
C02p15380 Brassica napus HOM05D004098 ORTHO05D005215 3.4e-24 117.9 136 58.1
Gohir.A05G415701 Gossypium hirsutum HOM05D002376 ORTHO05D004654 4.9e-23 114.0 70 78.6
Gohir.D03G178425 Gossypium hirsutum HOM05D004098 ORTHO05D005215 9.2e-22 109.8 61 83.6
Gohir.A12G000500 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.2e-21 109.4 61 83.6
Gohir.A07G135000 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.5e-21 107.8 60 85.0
MBI15_g32219_MAGBIO Magnolia biondii HOM05D004098 ORTHO05D005215 4.6e-21 107.5 117 56.4
Hma1.2p1_0321F.1_g124420 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 2.3e-20 105.1 142 50.7
Lsat_1_v5_gn_8_153381 Lactuca sativa HOM05D004098 ORTHO05D005215 3.3e-19 101.3 144 45.1
Cpa.g.sc12.49 Carica papaya HOM05D004098 ORTHO05D021823 5.6e-19 100.5 155 90.3
Lsat_1_v5_gn_2_71300 Lactuca sativa HOM05D004098 ORTHO05D005215 2.3e-17 95.1 79 63.3
Lsat_1_v5_gn_6_79681 Lactuca sativa HOM05D004098 ORTHO05D005215 5.8e-16 90.5 146 39.0
HPP92_017856 Vanilla planifolia HOM05D004098 ORTHO05D005215 4.9e-15 87.4 116 49.1
TPR.G8441 Trifolium pratense HOM05D004098 ORTHO05D021823 1.1e-14 86.3 154 83.8
Gohir.A03G081400 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.0e-12 78.2 60 70.0
Lsat_1_v5_gn_3_67900 Lactuca sativa HOM05D004098 ORTHO05D005215 3.9e-12 77.8 190 34.2
Lsat_1_v5_gn_9_105500 Lactuca sativa HOM05D004098 ORTHO05D001482 7.3e-11 73.6 106 47.2
Cfa024256 Carpinus fangiana HOM05D032100 ORTHO05D126575 2.8e-10 71.6 206 28.6
Haze_09931 Corylus avellana HOM05D000997 ORTHO05D000828 1.4e-09 69.3 109 44.0
BcaB05g22258 Brassica carinata HOM05D004098 ORTHO05D021823 8.9e-09 66.6 32 96.9
Hund01805 Selenicereus undatus HOM05D004098 ORTHO05D005215 2.6e-08 65.1 41 73.2
Gohir.A06G201400 Gossypium hirsutum HOM05D002376 ORTHO05D004654 1.9e-06 58.9 32 81.2
Gohir.A08G000028 Gossypium hirsutum HOM05D002376 ORTHO05D004654 7.1e-06 57.0 31 80.6
Gohir.A09G249700 Gossypium hirsutum HOM05D004098 ORTHO05D021823 7.1e-06 57.0 32 78.1
Gohir.A10G243600 Gossypium hirsutum HOM05D004098 ORTHO05D005454 7.1e-06 57.0 25 96.0


User provided reference genes

Program Settings