Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g06358 Brassica carinata HOM05D004186 ORTHO05D011383 1.2e-38 162.5 75 100.0
BcaC01g06364 Brassica carinata HOM05D004186 ORTHO05D011383 8.8e-37 156.4 72 100.0
C03p16540 Brassica napus HOM05D004186 ORTHO05D011383 3.0e-29 131.3 59 100.0
C02p54480 Brassica napus HOM05D003206 ORTHO05D016781 8.5e-16 86.7 61 67.2
A02p08350 Brassica napus HOM05D004186 ORTHO05D015971 2.1e-14 82.0 62 64.5
BraA02t05904Z Brassica rapa HOM05D004186 ORTHO05D015971 2.1e-14 82.0 62 64.5
BolC2t07527H Brassica oleracea HOM05D004186 ORTHO05D032859 6.1e-14 80.5 61 62.3
BcaC03g14138 Brassica carinata HOM05D004186 ORTHO05D032859 3.0e-13 78.2 61 62.3
C02p14070 Brassica napus HOM05D004186 ORTHO05D032859 3.0e-13 78.2 61 62.3
BcaC07g38783 Brassica carinata HOM05D002592 ORTHO05D011383 9.7e-12 73.2 69 50.7
C08p17140 Brassica napus HOM05D004186 ORTHO05D011383 4.8e-11 70.9 33 90.9
BolC8t49341H Brassica oleracea HOM05D004186 ORTHO05D011383 4.8e-11 70.9 33 90.9
Thhalv10013406m.g Eutrema salsugineum HOM05D004186 ORTHO05D006965 9.1e-10 66.6 62 56.5
Sp6g19340 Schrenkiella parvula HOM05D004186 ORTHO05D006965 9.1e-10 66.6 60 55.0
AL8G33680 Arabidopsis lyrata HOM05D004186 ORTHO05D006965 1.6e-09 65.9 61 52.5
AT5G57655 Arabidopsis thaliana HOM05D004186 ORTHO05D006965 1.6e-09 65.9 61 52.5
RcHm_v2.0_Chr4g0403601 Rosa chinensis HOM05D004186 ORTHO05D006965 2.7e-09 65.1 61 52.5
BolC9t57806H Brassica oleracea HOM05D004186 ORTHO05D006965 4.5e-09 64.3 61 49.2
A10p15060 Brassica napus HOM05D004186 ORTHO05D006965 1.3e-08 62.8 61 50.8
BraA10t43588Z Brassica rapa HOM05D004186 ORTHO05D006965 1.3e-08 62.8 61 50.8
Carub.0008s1816 Capsella rubella HOM05D004186 ORTHO05D006965 1.7e-08 62.4 60 50.0
Potri.018G096049 Populus trichocarpa HOM05D004186 ORTHO05D006965 1.7e-08 62.4 61 50.8
Thecc.10G167400 Theobroma cacao HOM05D004186 ORTHO05D006965 2.2e-08 62.0 61 50.8
FAN22G1241 Fragaria x ananassa HOM05D004186 ORTHO05D006965 3.8e-08 61.2 61 49.2
Sed0027081 Sechium edule HOM05D004186 ORTHO05D006965 3.8e-08 61.2 60 48.3
BcaC04g19942 Brassica carinata HOM05D004186 ORTHO05D006965 5.0e-08 60.8 61 49.2
C09p49530 Brassica napus HOM05D004186 ORTHO05D006965 5.0e-08 60.8 61 49.2
COL.COLO4_09973 Corchorus olitorius HOM05D004186 ORTHO05D006965 5.0e-08 60.8 61 49.2
MELO3C004075.2 Cucumis melo HOM05D004186 ORTHO05D006965 5.0e-08 60.8 60 50.0
Dinv41278 Davidia involucrata HOM05D004186 ORTHO05D006965 5.0e-08 60.8 58 48.3
CsaV3_2G008080 Cucumis sativus L. HOM05D004186 ORTHO05D006965 8.5e-08 60.1 60 50.0
Duzib114G0309 Durio zibethinus HOM05D004186 ORTHO05D006965 8.5e-08 60.1 61 49.2
FvH4_4g32520 Fragaria vesca HOM05D004186 ORTHO05D006965 8.5e-08 60.1 61 47.5
FAN07G2198 Fragaria x ananassa HOM05D004186 ORTHO05D006965 8.5e-08 60.1 61 47.5
FAN12G1387 Fragaria x ananassa HOM05D004186 ORTHO05D006965 8.5e-08 60.1 61 47.5
BcaB08g36123 Brassica carinata HOM05D004186 ORTHO05D006965 1.5e-07 59.3 61 49.2
ClCG11G012460 Citrullus lanatus HOM05D004186 ORTHO05D006965 1.5e-07 59.3 60 50.0
Gohir.A05G280700 Gossypium hirsutum HOM05D004186 ORTHO05D006965 1.5e-07 59.3 61 45.9
Gorai.009G296100 Gossypium raimondii HOM05D004186 ORTHO05D006965 1.5e-07 59.3 61 45.9
TPR.G5301 Trifolium pratense HOM05D004186 ORTHO05D006965 2.5e-07 58.5 58 48.3
BcaC05g27566 Brassica carinata HOM05D001159 ORTHO05D011383 3.2e-07 58.2 33 78.8
C05p35490 Brassica napus HOM05D001159 ORTHO05D011383 3.2e-07 58.2 33 78.8
C07p46470 Brassica napus HOM05D001159 ORTHO05D011383 3.2e-07 58.2 33 78.8
Haze_22131 Corylus avellana HOM05D004186 ORTHO05D006965 3.2e-07 58.2 76 40.8
Duzib034G0005 Durio zibethinus HOM05D004186 ORTHO05D006965 3.2e-07 58.2 61 47.5
VMungo1215G1034 Vigna mungo HOM05D004186 ORTHO05D006965 3.2e-07 58.2 61 47.5
CiPaw.08G037900 Carya illinoinensis HOM05D004186 ORTHO05D006965 5.5e-07 57.4 55 50.9
CANSAT11G0657 Cannabis sativa HOM05D004186 ORTHO05D006965 9.4e-07 56.6 58 46.6
Os07g0669100 Oryza sativa ssp. japonica HOM05D004186 ORTHO05D006965 9.4e-07 56.6 62 50.0
Aa31LG3G13490 Aethionema arabicum HOM05D004186 ORTHO05D006965 1.2e-06 56.2 61 45.9
THA.LOC104813530 Tarenaya hassleriana HOM05D004186 ORTHO05D006965 1.2e-06 56.2 60 46.7
TWI32G0580 Tripterygium wilfordii HOM05D004186 ORTHO05D006965 1.2e-06 56.2 57 45.6
TAR625G0733 Trochodendron aralioides HOM05D004186 ORTHO05D006965 1.2e-06 56.2 63 47.6
Dinv42759 Davidia involucrata HOM05D004186 ORTHO05D006965 1.6e-06 55.8 63 47.6
Dinv43343 Davidia involucrata HOM05D004186 ORTHO05D006965 1.6e-06 55.8 63 47.6
C08p01710 Brassica napus HOM05D002592 ORTHO05D011383 2.1e-06 55.5 24 95.8
CARHR271410 Cardamine hirsuta HOM05D004186 ORTHO05D006965 2.1e-06 55.5 60 48.3
Duzib128G0608 Durio zibethinus HOM05D004186 ORTHO05D006965 2.1e-06 55.5 58 48.3
Lsat_1_v5_gn_8_66460 Lactuca sativa HOM05D004186 ORTHO05D006965 2.1e-06 55.5 64 46.9
Atru.chr7.741 Acer truncatum HOM05D004186 ORTHO05D006965 2.7e-06 55.1 60 45.0
Aqoxy7G03142 Aquilegia oxysepala HOM05D004186 ORTHO05D006965 2.7e-06 55.1 60 46.7
DCAR_017956 Daucus carota HOM05D004186 ORTHO05D006965 2.7e-06 55.1 58 48.3
CiPaw.07G189100 Carya illinoinensis HOM05D004186 ORTHO05D006965 3.6e-06 54.7 60 46.7
QL02p096850 Quercus lobata HOM05D004186 ORTHO05D006965 3.6e-06 54.7 60 46.7
GSVIVG01029114001 Vitis vinifera HOM05D004186 ORTHO05D006965 3.6e-06 54.7 62 45.2
MD13G1265000 Malus domestica HOM05D004186 ORTHO05D006965 4.7e-06 54.3 61 49.2
Nn2g12639 Nelumbo nucifera HOM05D004186 ORTHO05D006965 4.7e-06 54.3 60 48.3
C09p03000 Brassica napus HOM05D001159 ORTHO05D011383 6.1e-06 53.9 33 72.7
BolC9t53230H Brassica oleracea HOM05D001159 ORTHO05D011383 6.1e-06 53.9 33 72.7
Gohir.D05G282700 Gossypium hirsutum HOM05D004186 ORTHO05D006965 6.1e-06 53.9 61 42.6
Lj9A689G39 Lonicera japonica HOM05D004186 ORTHO05D006965 6.1e-06 53.9 65 44.6
Solyc07g006650.4 Solanum lycopersicum HOM05D004186 ORTHO05D006965 6.1e-06 53.9 62 45.2
Sopen07g002760 Solanum pennellii HOM05D004186 ORTHO05D006965 6.1e-06 53.9 62 45.2
Manes.06G027600 Manihot esculenta HOM05D004186 ORTHO05D006965 8.0e-06 53.5 58 44.8
Oeu052240.1 Olea europaea HOM05D004186 ORTHO05D006965 8.0e-06 53.5 62 43.5
SalBow6G3740 Salvia bowleyana HOM05D004186 ORTHO05D006965 8.0e-06 53.5 62 46.8


User provided reference genes

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