Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g06216 Brassica carinata HOM05D002306 ORTHO05D006484 4.8e-42 174.1 89 100.0
C03p18020 Brassica napus HOM05D002306 ORTHO05D006484 4.8e-42 174.1 89 100.0
BolC3t14207H Brassica oleracea HOM05D002306 ORTHO05D006484 4.8e-42 174.1 89 100.0
A03p15460 Brassica napus HOM05D002306 ORTHO05D006484 6.3e-34 147.1 89 87.6
BraA03t10836Z Brassica rapa HOM05D002306 ORTHO05D006484 6.3e-34 147.1 89 87.6
BraA03t10838Z Brassica rapa HOM05D002306 ORTHO05D006484 6.3e-34 147.1 89 87.6
BraA03t10841Z Brassica rapa HOM05D002306 ORTHO05D006484 6.3e-34 147.1 89 87.6
AL8G27670 Arabidopsis lyrata HOM05D002306 ORTHO05D006484 2.4e-33 145.2 80 90.0
Carub.0008s1324 Capsella rubella HOM05D002306 ORTHO05D006484 2.4e-33 145.2 80 90.0
Sp6g15200 Schrenkiella parvula HOM05D002306 ORTHO05D006484 4.1e-33 144.4 80 90.0
A03p15430 Brassica napus HOM05D002306 ORTHO05D006484 5.3e-33 144.1 79 91.1
BraA03t10832Z Brassica rapa HOM05D002306 ORTHO05D006484 5.3e-33 144.1 79 91.1
BraA03t10833Z Brassica rapa HOM05D002306 ORTHO05D006484 5.3e-33 144.1 79 91.1
AT5G53045 Arabidopsis thaliana HOM05D002306 ORTHO05D006484 7.0e-33 143.7 80 90.0
Thhalv10022935m.g Eutrema salsugineum HOM05D002306 ORTHO05D006484 9.1e-33 143.3 80 88.8
Thhalv10015123m.g Eutrema salsugineum HOM05D002306 ORTHO05D006484 2.0e-32 142.1 80 90.0
Aa31LG3G9430 Aethionema arabicum HOM05D002306 ORTHO05D006484 7.7e-32 140.2 84 81.0
CARHR266060 Cardamine hirsuta HOM05D002306 ORTHO05D006484 3.8e-31 137.9 79 86.1
BcaB08g35664 Brassica carinata HOM05D002306 ORTHO05D006484 1.9e-30 135.6 89 78.7
A10p10530 Brassica napus HOM05D002306 ORTHO05D006484 7.2e-30 133.7 79 83.5
BraA10t43137Z Brassica rapa HOM05D002306 ORTHO05D006484 7.2e-30 133.7 79 83.5
BcaC04g20513 Brassica carinata HOM05D002306 ORTHO05D006484 2.1e-29 132.1 79 82.3
C09p42750 Brassica napus HOM05D002306 ORTHO05D006484 2.1e-29 132.1 79 82.3
BolC9t57151H Brassica oleracea HOM05D002306 ORTHO05D006484 2.1e-29 132.1 79 82.3
THA.LOC104825151 Tarenaya hassleriana HOM05D002306 ORTHO05D006484 2.7e-29 131.7 79 81.0
RcHm_v2.0_Chr1g0381471 Rosa chinensis HOM05D002306 ORTHO05D006484 1.7e-26 122.5 84 71.4
ECA232G1226 Erigeron canadensis HOM05D002306 ORTHO05D006484 2.8e-26 121.7 79 74.7
Atru.chr1.2784 Acer truncatum HOM05D002306 ORTHO05D006484 4.8e-26 120.9 84 70.2
TPR.G33626 Trifolium pratense HOM05D002306 ORTHO05D006484 8.3e-26 120.2 83 72.3
Prupe.2G312900 Prunus persica HOM05D002306 ORTHO05D006484 1.1e-25 119.8 79 74.7
Sabra12G0015400 Salix brachista HOM05D002306 ORTHO05D006484 1.4e-25 119.4 87 66.7
FAN10G3342 Fragaria x ananassa HOM05D002306 ORTHO05D006484 1.8e-25 119.0 79 74.7
AUR62006081 Chenopodium quinoa HOM05D002306 ORTHO05D006484 2.4e-25 118.6 82 68.3
COL.COLO4_16787 Corchorus olitorius HOM05D002306 ORTHO05D006484 2.4e-25 118.6 82 70.7
Haze_00198 Corylus avellana HOM05D002306 ORTHO05D005773 2.4e-25 118.6 81 71.6
Hund11652 Selenicereus undatus HOM05D002306 ORTHO05D006484 2.4e-25 118.6 85 68.2
Ah.07g205530 Amaranthus hybridus HOM05D002306 ORTHO05D006484 3.1e-25 118.2 79 73.4
CSS0043540 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 3.1e-25 118.2 81 69.1
Dinv29265 Davidia involucrata HOM05D002306 ORTHO05D006484 3.1e-25 118.2 81 70.4
Nn3g18952 Nelumbo nucifera HOM05D002306 ORTHO05D006484 3.1e-25 118.2 85 65.9
Psat5g075320 Pisum sativum HOM05D002306 ORTHO05D006484 3.1e-25 118.2 83 69.9
CAN.G481.25 Capsicum annuum HOM05D002306 ORTHO05D006484 4.1e-25 117.9 81 71.6
Cfa016242 Carpinus fangiana HOM05D002306 ORTHO05D006484 4.1e-25 117.9 81 71.6
ClCG05G009020 Citrullus lanatus HOM05D002306 ORTHO05D006484 4.1e-25 117.9 84 65.5
Nn8g40946 Nelumbo nucifera HOM05D002306 ORTHO05D006484 4.1e-25 117.9 79 72.2
Potri.015G011500 Populus trichocarpa HOM05D002306 ORTHO05D006484 4.1e-25 117.9 89 68.5
arahy.Tifrunner.gnm1.ann1.CGD4UQ Arachis hypogaea HOM05D002306 ORTHO05D006484 5.3e-25 117.5 94 67.0
Oeu037053.1 Olea europaea HOM05D002306 ORTHO05D006484 7.0e-25 117.1 85 67.1
Phvul.001G057400 Phaseolus vulgaris HOM05D002306 ORTHO05D006484 9.1e-25 116.7 82 69.5
Duzib084G1054 Durio zibethinus HOM05D002306 ORTHO05D006484 1.2e-24 116.3 78 71.8
THA.LOC104803913 Tarenaya hassleriana HOM05D002306 ORTHO05D006484 1.2e-24 116.3 73 80.8
Sc13g0009850 Simmondsia chinensis HOM05D002306 ORTHO05D006484 1.6e-24 115.9 84 67.9
Solyc03g083020.3 Solanum lycopersicum HOM05D002306 ORTHO05D006484 1.6e-24 115.9 79 72.2
Sopen03g022830 Solanum pennellii HOM05D002306 ORTHO05D006484 1.6e-24 115.9 79 72.2
PGSC0003DMG402018530 Solanum tuberosum HOM05D002306 ORTHO05D006484 1.6e-24 115.9 79 72.2
MD01G1222500 Malus domestica HOM05D002306 ORTHO05D006484 2.0e-24 115.5 83 69.9
MD07G1293100 Malus domestica HOM05D002306 ORTHO05D006484 2.0e-24 115.5 83 69.9
Manes.05G190300 Manihot esculenta HOM05D002306 ORTHO05D006484 2.0e-24 115.5 81 69.1
Actinidia08660 Actinidia chinensis HOM05D002306 ORTHO05D006484 2.7e-24 115.2 79 69.6
arahy.Tifrunner.gnm1.ann1.84THGE Arachis hypogaea HOM05D002306 ORTHO05D006484 2.7e-24 115.2 91 69.2
MELO3C008504.2 Cucumis melo HOM05D002306 ORTHO05D006484 2.7e-24 115.2 81 66.7
Glyma.11G174073 Glycine max HOM05D002306 ORTHO05D006484 2.7e-24 115.2 85 67.1
Glyma.17G200500 Glycine max HOM05D002306 ORTHO05D006484 2.7e-24 115.2 85 67.1
SGA_v2.0_scaffold44G16812 Striga asiatica HOM05D002306 ORTHO05D005773 2.7e-24 115.2 82 68.3
MSTRG.8645 Avicennia marina HOM05D002306 ORTHO05D006484 3.5e-24 114.8 83 67.5
FAN10G1840 Fragaria x ananassa HOM05D002306 ORTHO05D006484 3.5e-24 114.8 79 73.4
QL09p008635 Quercus lobata HOM05D002306 ORTHO05D006484 3.5e-24 114.8 79 69.6
ECA233G2756 Erigeron canadensis HOM05D002476 ORTHO05D006484 4.5e-24 114.4 86 64.0
Gohir.A09G184900 Gossypium hirsutum HOM05D002306 ORTHO05D006484 4.5e-24 114.4 78 70.5
Medtr1g007870 Medicago truncatula HOM05D002306 ORTHO05D006484 4.5e-24 114.4 79 70.9
Medtr3g091850 Medicago truncatula HOM05D002306 ORTHO05D006484 4.5e-24 114.4 83 69.9
TWI39G0647 Tripterygium wilfordii HOM05D002306 ORTHO05D006484 4.5e-24 114.4 79 69.6
vmacro10128 Vaccinium macrocarpon HOM05D002306 ORTHO05D006484 5.9e-24 114.0 79 67.1
Lsat_1_v5_gn_8_5361 Lactuca sativa HOM05D002306 ORTHO05D006484 1.0e-23 113.2 79 67.1
Lj6g0020019 Lotus japonicus HOM05D002306 ORTHO05D006484 1.0e-23 113.2 79 72.2
arahy.Tifrunner.gnm1.ann1.K9F3KZ Arachis hypogaea HOM05D002306 ORTHO05D006484 1.3e-23 112.8 91 68.1
Cc02_g01390 Coffea canephora HOM05D002306 ORTHO05D006484 1.7e-23 112.5 79 70.9
CANSAT21G2118 Cannabis sativa HOM05D002306 ORTHO05D006484 2.2e-23 112.1 83 67.5
CsaV3_3G019760 Cucumis sativus L. HOM05D002306 ORTHO05D006484 2.2e-23 112.1 82 64.6
Migut.F00201 Erythranthe guttata HOM05D002306 ORTHO05D006484 2.2e-23 112.1 83 65.1
PGR042G2650 Punica granatum HOM05D002306 ORTHO05D006484 2.2e-23 112.1 83 67.5
vmacro06392 Vaccinium macrocarpon HOM05D002306 ORTHO05D006484 2.2e-23 112.1 79 68.4
Gohir.D09G179800 Gossypium hirsutum HOM05D002306 ORTHO05D006484 2.9e-23 111.7 78 69.2
Gorai.006G201800 Gossypium raimondii HOM05D002306 ORTHO05D006484 2.9e-23 111.7 78 69.2
Thecc.03G200700 Theobroma cacao HOM05D002306 ORTHO05D006484 3.8e-23 111.3 78 69.2
Eucgr.K00393 Eucalyptus grandis HOM05D002306 ORTHO05D006484 6.5e-23 110.5 79 68.4
Sed0012841 Sechium edule HOM05D002306 ORTHO05D006484 6.5e-23 110.5 79 65.8
TPR.G12084 Trifolium pratense HOM05D002306 ORTHO05D006484 6.5e-23 110.5 82 67.1
Peaxi162Scf00740g00131 Petunia axillaris HOM05D002306 ORTHO05D006484 8.5e-23 110.2 86 66.3
Aqoxy3G03743 Aquilegia oxysepala HOM05D002306 ORTHO05D006484 1.1e-22 109.8 85 60.0
BcaB01g04219 Brassica carinata HOM05D002306 ORTHO05D006484 1.1e-22 109.8 79 75.9
PSO135G0367 Papaver somniferum HOM05D002306 ORTHO05D006484 1.5e-22 109.4 79 67.1
PSO782G0677 Papaver somniferum HOM05D002306 ORTHO05D006484 1.5e-22 109.4 79 67.1
FvH4_7g31970 Fragaria vesca HOM05D002306 ORTHO05D006484 2.5e-22 108.6 78 73.1
PSO384G3554 Papaver somniferum HOM05D002306 ORTHO05D006484 3.2e-22 108.2 79 65.8
Aqoxy5G04246 Aquilegia oxysepala HOM05D002306 ORTHO05D006484 4.2e-22 107.8 79 64.6
CDE11G0760 Ceratophyllum demersum HOM05D002306 ORTHO05D006484 4.2e-22 107.8 79 67.1
GSVIVG01038565001 Vitis vinifera HOM05D002306 ORTHO05D006484 4.2e-22 107.8 79 67.1
FAN06G3491 Fragaria x ananassa HOM05D002306 ORTHO05D006484 5.5e-22 107.5 73 75.3
EL10Ac3g05270 Beta vulgaris HOM05D002306 ORTHO05D006484 7.2e-22 107.1 73 74.0
Lalb_Chr11g0066981 Lupinus albus HOM05D002306 ORTHO05D006484 7.2e-22 107.1 83 65.1
TWI14G0402 Tripterygium wilfordii HOM05D002306 ORTHO05D006484 7.2e-22 107.1 84 64.3
PSO170G5717 Papaver somniferum HOM05D002306 ORTHO05D006484 9.4e-22 106.7 82 62.2
AUR62019413 Chenopodium quinoa HOM05D002306 ORTHO05D006484 1.2e-21 106.3 73 71.2
MBI07_g24774_MAGBIO Magnolia biondii HOM05D002306 ORTHO05D006484 1.2e-21 106.3 84 60.7
CiPaw.05G197900 Carya illinoinensis HOM05D002306 ORTHO05D006484 1.6e-21 105.9 73 71.2
Ciclev10023672m.g Citrus clementina HOM05D002306 ORTHO05D006484 1.6e-21 105.9 79 63.3
VMungo0647G0954 Vigna mungo HOM05D002306 ORTHO05D006484 3.6e-21 104.8 76 68.4
arahy.Tifrunner.gnm1.ann1.XWYM96 Arachis hypogaea HOM05D002476 ORTHO05D002652 6.1e-21 104.0 85 64.7
Rhsim03G0209800 Rhododendron simsii HOM05D002306 ORTHO05D006484 6.1e-21 104.0 72 72.2
Rhsim03G0210000 Rhododendron simsii HOM05D002306 ORTHO05D006484 6.1e-21 104.0 72 72.2
Rhsim03G0210100 Rhododendron simsii HOM05D002306 ORTHO05D006484 6.1e-21 104.0 72 72.2
Nitab4.5_0000548g0070 Nicotiana tabacum HOM05D002306 ORTHO05D006484 8.0e-21 103.6 73 72.6
unitig_8.g4777 Utricularia gibba HOM05D002306 ORTHO05D006484 1.0e-20 103.2 80 68.8
Potri.012G017000 Populus trichocarpa HOM05D002306 ORTHO05D006484 1.4e-20 102.8 69 75.4
HanXRQChr15g0485701 Helianthus annuus HOM05D002306 ORTHO05D006484 2.3e-20 102.1 73 69.9
Lsat_1_v5_gn_9_49781 Lactuca sativa HOM05D002306 ORTHO05D006484 2.3e-20 102.1 76 65.8
Sabra15G0009400 Salix brachista HOM05D002306 ORTHO05D006484 2.3e-20 102.1 72 69.4
DCAR_008946 Daucus carota HOM05D002306 ORTHO05D006484 3.0e-20 101.7 73 71.2
Os02g0305800 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 5.2e-20 100.9 79 59.5
Psat6g034920 Pisum sativum HOM05D002306 ORTHO05D006484 5.2e-20 100.9 73 67.1
Ciclev10024526m.g Citrus clementina HOM05D002306 ORTHO05D006484 2.6e-19 98.6 80 62.5
ATR0602G202 Amborella trichopoda HOM05D002306 ORTHO05D006484 3.4e-19 98.2 79 60.8
HPP92_020719 Vanilla planifolia HOM05D002306 ORTHO05D006484 7.5e-19 97.1 82 53.7
CSS0043767 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 9.8e-19 96.7 72 68.1
Lj1g0020624 Lotus japonicus HOM05D002306 ORTHO05D006484 1.7e-18 95.9 73 67.1
Ciclev10023496m.g Citrus clementina HOM05D002306 ORTHO05D006484 2.8e-18 95.1 80 60.0
ATR1127G174 Amborella trichopoda HOM05D002306 ORTHO05D006484 3.7e-18 94.7 79 59.5
Duzib068G0867 Durio zibethinus HOM05D002306 ORTHO05D006484 8.3e-18 93.6 72 68.1
SGA_v2.0_scaffold192G40528 Striga asiatica HOM05D005626 ORTHO05D007032 5.9e-16 87.4 73 61.6
SMO351G0263 Selaginella moellendorffii HOM05D002306 ORTHO05D006484 1.3e-15 86.3 77 58.4
Glyma.14G131800 Glycine max HOM05D002306 ORTHO05D006484 2.3e-15 85.5 73 61.6
CSS0003606 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 8.6e-15 83.6 72 59.7
Pp3c15_21670 Physcomitrium patens HOM05D002306 ORTHO05D006484 1.5e-14 82.8 77 57.1
AagrBONN_evm.TU.Sc2ySwM_228.5884 Anthoceros agrestis HOM05D002306 ORTHO05D006484 1.6e-13 79.3 76 55.3
Dinv35345 Davidia involucrata HOM05D002306 ORTHO05D006484 3.6e-13 78.2 54 64.8
Mapoly0129s0038 Marchantia polymorpha HOM05D002306 ORTHO05D006484 3.6e-13 78.2 78 48.7
AagrBONN_evm.TU.Sc2ySwM_228.5887 Anthoceros agrestis HOM05D002306 ORTHO05D006484 1.8e-12 75.9 77 55.8
CBR_g50381 Chara braunii HOM05D002306 ORTHO05D006484 9.8e-11 70.1 77 46.8
Ciclev10023204m.g Citrus clementina HOM05D002306 ORTHO05D006484 2.8e-10 68.6 57 52.6
Rhsim09G0206300 Rhododendron simsii HOM05D002306 ORTHO05D006484 2.8e-10 68.6 51 58.8
Os02g0306250 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 4.9e-10 67.8 51 64.7
Os08g0534400 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 4.9e-10 67.8 51 64.7
Zm00001eb152100 Zea mays HOM05D002306 ORTHO05D006484 1.2e-08 63.2 50 58.0


User provided reference genes

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