Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g06164 Brassica carinata HOM05D005908 ORTHO05D007235 7.4e-158 560.5 277 100.0
C03p18500 Brassica napus HOM05D005908 ORTHO05D007235 7.4e-158 560.5 277 100.0
BolC3t14247H Brassica oleracea HOM05D005908 ORTHO05D007235 7.4e-158 560.5 277 100.0
BraA03t10874Z Brassica rapa HOM05D005908 ORTHO05D007235 7.5e-150 533.9 277 95.3
A03p15840 Brassica napus HOM05D005908 ORTHO05D007235 1.7e-149 532.7 277 94.9
BcaB01g04184 Brassica carinata HOM05D005908 ORTHO05D007235 1.4e-140 503.1 278 89.9
Sp6g14360 Schrenkiella parvula HOM05D005908 ORTHO05D007235 2.2e-138 495.7 280 86.4
SpUn0060_0050 Schrenkiella parvula HOM05D005908 ORTHO05D007235 2.2e-138 495.7 280 86.4
AT5G52110 Arabidopsis thaliana HOM05D005908 ORTHO05D007235 2.6e-134 482.3 279 85.3
Thhalv10014339m.g Eutrema salsugineum HOM05D005908 ORTHO05D007235 3.4e-134 481.9 280 84.6
Carub.0008s1219 Capsella rubella HOM05D005908 ORTHO05D007235 5.7e-134 481.1 280 83.2
AL8G26480 Arabidopsis lyrata HOM05D005908 ORTHO05D007235 9.8e-134 480.3 277 84.1
CARHR265040 Cardamine hirsuta HOM05D005908 ORTHO05D007235 4.9e-133 478.0 280 82.9
Aa31LG3G8480 Aethionema arabicum HOM05D005908 ORTHO05D007235 2.7e-123 445.7 280 77.5
THA.LOC104811995 Tarenaya hassleriana HOM05D005908 ORTHO05D007235 3.7e-109 398.7 280 71.1
Atru.chr1.515 Acer truncatum HOM05D005908 ORTHO05D007235 7.3e-89 331.3 279 57.7
Ciclev10005584m.g Citrus clementina HOM05D005908 ORTHO05D007235 9.6e-89 330.9 262 62.2
Potri.015G138400 Populus trichocarpa HOM05D005908 ORTHO05D007235 1.6e-88 330.1 281 58.7
Cpa.g.sc107.9 Carica papaya HOM05D005908 ORTHO05D007235 6.2e-88 328.2 262 63.7
Sabra15G0149500 Salix brachista HOM05D005908 ORTHO05D007235 1.1e-87 327.4 280 57.5
Manes.06G144000 Manihot esculenta HOM05D005908 ORTHO05D007235 1.4e-87 327.0 254 64.6
Dinv35179 Davidia involucrata HOM05D005908 ORTHO05D007235 6.9e-87 324.7 258 62.4
GSVIVG01010617001 Vitis vinifera HOM05D005908 ORTHO05D007235 7.6e-86 321.2 276 60.1
Actinidia32893 Actinidia chinensis HOM05D005908 ORTHO05D007235 1.3e-85 320.5 263 60.8
TWI23G0151 Tripterygium wilfordii HOM05D005908 ORTHO05D007235 2.9e-85 319.3 242 62.8
QL09p014976 Quercus lobata HOM05D005908 ORTHO05D007235 3.8e-85 318.9 289 56.4
MD13G1243600 Malus domestica HOM05D005908 ORTHO05D007235 1.4e-84 317.0 253 60.1
CANSAT21G0021 Cannabis sativa HOM05D005908 ORTHO05D007235 7.1e-84 314.7 285 58.2
CANSAT21G0323 Cannabis sativa HOM05D005908 ORTHO05D007235 7.9e-83 311.2 285 57.5
FvH4_7g15530 Fragaria vesca HOM05D005908 ORTHO05D007235 1.3e-82 310.5 283 56.2
FAN06G2086 Fragaria x ananassa HOM05D005908 ORTHO05D007235 1.3e-82 310.5 283 56.2
FAN06G0652 Fragaria x ananassa HOM05D005908 ORTHO05D007235 2.3e-82 309.7 283 55.8
Sed0015226 Sechium edule HOM05D005908 ORTHO05D007235 3.0e-82 309.3 276 56.9
TWI39G0968 Tripterygium wilfordii HOM05D005908 ORTHO05D007235 3.9e-82 308.9 280 55.4
FAN03G0397 Fragaria x ananassa HOM05D005908 ORTHO05D007235 5.1e-82 308.5 262 58.4
FAN10G2728 Fragaria x ananassa HOM05D005908 ORTHO05D007235 5.1e-82 308.5 283 55.8
FAN10G3232 Fragaria x ananassa HOM05D005908 ORTHO05D007235 6.6e-82 308.1 283 55.8
TAR375G0795 Trochodendron aralioides HOM05D005908 ORTHO05D007235 8.7e-82 307.8 254 59.1
Hma1.2p1_0270F.1_g108430 Hydrangea macrophylla HOM05D005908 ORTHO05D007235 1.5e-81 307.0 248 58.9
RcHm_v2.0_Chr1g0376741 Rosa chinensis HOM05D005908 ORTHO05D007235 1.5e-81 307.0 264 56.4
CAN.G548.2 Capsicum annuum HOM05D005908 ORTHO05D007235 1.9e-81 306.6 272 57.0
Cc10_g10330 Coffea canephora HOM05D005908 ORTHO05D007235 1.9e-81 306.6 253 60.9
DCAR_009351 Daucus carota HOM05D005908 ORTHO05D007235 4.3e-81 305.4 255 58.8
CiPaw.04G067300 Carya illinoinensis HOM05D005908 ORTHO05D007235 7.4e-81 304.7 266 56.4
FAN01G2408 Fragaria x ananassa HOM05D005908 ORTHO05D007235 7.4e-81 304.7 257 58.8
ClCG05G007830 Citrullus lanatus HOM05D005908 ORTHO05D007235 9.6e-81 304.3 253 59.7
Nn6g34248 Nelumbo nucifera HOM05D005908 ORTHO05D007235 2.1e-80 303.1 260 57.3
Thecc.03G170900 Theobroma cacao HOM05D005908 ORTHO05D007235 3.6e-80 302.4 252 59.5
VMungo0464G0636 Vigna mungo HOM05D005908 ORTHO05D007235 3.6e-80 302.4 277 55.2
Sopen03g005070 Solanum pennellii HOM05D005908 ORTHO05D007235 6.2e-80 301.6 268 57.5
COL.COLO4_14265 Corchorus olitorius HOM05D005908 ORTHO05D007235 8.1e-80 301.2 280 55.0
Solyc03g026200.4 Solanum lycopersicum HOM05D005908 ORTHO05D007235 1.1e-79 300.8 268 57.5
Lj1A993G71 Lonicera japonica HOM05D005908 ORTHO05D007235 1.4e-79 300.4 254 58.7
PGSC0003DMG402014313 Solanum tuberosum HOM05D005908 ORTHO05D007235 1.4e-79 300.4 267 57.7
Cfa008281 Carpinus fangiana HOM05D005908 ORTHO05D007235 1.8e-79 300.1 227 63.0
CsaV3_3G016830 Cucumis sativus L. HOM05D005908 ORTHO05D007235 5.3e-79 298.5 269 56.5
Gohir.D09G040800 Gossypium hirsutum HOM05D005908 ORTHO05D007235 1.2e-78 297.4 252 59.1
PSO478G3277 Papaver somniferum HOM05D005908 ORTHO05D007235 2.6e-78 296.2 274 55.1
PSO782G1770 Papaver somniferum HOM05D005908 ORTHO05D007235 2.6e-78 296.2 274 54.0
Aqoxy7G00441 Aquilegia oxysepala HOM05D005908 ORTHO05D007235 7.6e-78 294.7 283 54.8
Gorai.006G046700 Gossypium raimondii HOM05D005908 ORTHO05D007235 1.3e-77 293.9 252 58.3
Eucgr.K00226 Eucalyptus grandis HOM05D005908 ORTHO05D007235 2.2e-77 293.1 276 55.4
vmacro08977 Vaccinium macrocarpon HOM05D005908 ORTHO05D007235 2.2e-77 293.1 258 57.0
Lalb_Chr01g0009141 Lupinus albus HOM05D005908 ORTHO05D007235 9.3e-76 287.7 250 57.6
Glyma.16G198400 Glycine max HOM05D005908 ORTHO05D007235 1.2e-75 287.3 288 53.8
Rhsim04G0117700 Rhododendron simsii HOM05D005908 ORTHO05D007235 1.2e-75 287.3 327 46.2
TPR.G5821 Trifolium pratense HOM05D005908 ORTHO05D007235 4.6e-75 285.4 275 53.8
Lsat_1_v5_gn_2_133120 Lactuca sativa HOM05D005908 ORTHO05D007235 1.0e-74 284.3 243 57.2
MBI12_g29759_MAGBIO Magnolia biondii HOM05D005908 ORTHO05D007235 2.3e-74 283.1 248 54.8
Hund04705 Selenicereus undatus HOM05D005908 ORTHO05D007235 2.3e-74 283.1 255 55.3
Oeu030124.1 Olea europaea HOM05D005908 ORTHO05D007235 3.0e-74 282.7 244 55.3
HanXRQChr07g0206851 Helianthus annuus HOM05D005908 ORTHO05D007235 5.1e-74 282.0 248 57.7
vmacro06719 Vaccinium macrocarpon HOM05D005908 ORTHO05D007235 1.1e-73 280.8 294 50.0
Ah.13g068320 Amaranthus hybridus HOM05D005908 ORTHO05D007235 4.3e-73 278.9 274 51.1
MSTRG.8762 Avicennia marina HOM05D005908 ORTHO05D007235 7.4e-73 278.1 292 48.3
ECA238G1518 Erigeron canadensis HOM05D005908 ORTHO05D007235 2.8e-72 276.2 268 52.2
AUR62016029 Chenopodium quinoa HOM05D005908 ORTHO05D007235 4.8e-72 275.4 262 52.7
Sc25g0000390 Simmondsia chinensis HOM05D005908 ORTHO05D007235 4.8e-72 275.4 282 52.5
Lj4g0016789 Lotus japonicus HOM05D005908 ORTHO05D007235 8.1e-72 274.6 280 51.8
Lj2g0007665 Lotus japonicus HOM05D005908 ORTHO05D007235 9.0e-71 271.2 280 51.4
Psat1g113160 Pisum sativum HOM05D005908 ORTHO05D007235 9.0e-71 271.2 241 56.8
Migut.F00374 Erythranthe guttata HOM05D005908 ORTHO05D007235 2.0e-70 270.0 242 53.7
Prupe.1G077000 Prunus persica HOM05D005908 ORTHO05D007235 4.5e-70 268.9 269 50.6
Lj2g0024281 Lotus japonicus HOM05D005908 ORTHO05D007235 1.0e-69 267.7 280 51.4
arahy.Tifrunner.gnm1.ann1.K8NCYF Arachis hypogaea HOM05D005908 ORTHO05D007235 1.7e-69 266.9 301 48.2
arahy.Tifrunner.gnm1.ann1.580JC2 Arachis hypogaea HOM05D005908 ORTHO05D007235 3.8e-69 265.8 294 49.0
Zm00001eb021390 Zea mays HOM05D005908 ORTHO05D007235 6.5e-69 265.0 264 52.3
SalBow1G0690 Salvia bowleyana HOM05D005908 ORTHO05D007235 1.4e-68 263.8 243 53.5
Haze_13753 Corylus avellana HOM05D005908 ORTHO05D007235 4.2e-68 262.3 209 62.2
Hma1.2p1_0270F.1_g108420 Hydrangea macrophylla HOM05D005908 ORTHO05D007235 1.3e-66 257.3 277 47.7
CDE11G0458 Ceratophyllum demersum HOM05D003547 ORTHO05D004236 3.9e-66 255.8 234 53.8
ATR0757G107 Amborella trichopoda HOM05D005908 ORTHO05D007235 6.7e-66 255.0 227 54.2
SGA_v2.0_scaffold2G01076 Striga asiatica HOM05D005908 ORTHO05D007235 5.7e-65 251.9 269 46.8
Nitab4.5_0005024g0020 Nicotiana tabacum HOM05D005908 ORTHO05D007235 2.0e-62 243.4 262 49.2
Gohir.A09G040000 Gossypium hirsutum HOM05D005908 ORTHO05D007235 2.6e-62 243.0 185 63.8
AUR62021234 Chenopodium quinoa HOM05D005908 ORTHO05D007235 4.5e-62 242.3 214 54.7
Phvul.004G121600 Phaseolus vulgaris HOM05D005908 ORTHO05D007235 5.9e-62 241.9 189 61.4
HPP92_001363 Vanilla planifolia HOM05D005908 ORTHO05D007235 1.4e-60 237.3 251 50.2
Nitab4.5_0001083g0110 Nicotiana tabacum HOM05D005908 ORTHO05D007235 3.9e-58 229.2 285 45.3
EL10Ac3g05695 Beta vulgaris HOM05D005908 ORTHO05D007235 4.3e-57 225.7 193 56.5
Peaxi162Scf00915g00250 Petunia axillaris HOM05D005908 ORTHO05D007235 3.1e-55 219.5 264 47.0
vmacro06721 Vaccinium macrocarpon HOM05D005908 ORTHO05D007235 2.6e-49 199.9 261 43.7
MELO3C006877.2 Cucumis melo HOM05D005908 ORTHO05D007235 5.7e-49 198.7 272 42.6
SEGI_20513 Sequoiadendron giganteum HOM05D005908 ORTHO05D007235 5.5e-44 182.2 281 39.1
HPP92_001354 Vanilla planifolia HOM05D005908 ORTHO05D007235 7.9e-43 178.3 254 42.5
unitig_37.g11958 Utricularia gibba HOM05D005908 ORTHO05D007235 9.7e-41 171.4 186 45.7
Mapoly0051s0108 Marchantia polymorpha HOM05D005908 ORTHO05D007235 2.9e-37 159.8 233 40.3
AagrBONN_evm.TU.Sc2ySwM_228.723 Anthoceros agrestis HOM05D005908 ORTHO05D007235 1.1e-31 141.4 245 34.3
Pp3c13_15400 Physcomitrium patens HOM05D005908 ORTHO05D007235 1.2e-30 137.9 260 32.3
Lsat_1_v5_gn_2_133160 Lactuca sativa HOM05D005908 ORTHO05D007235 5.0e-29 132.5 114 59.6
SMO364G0827 Selaginella moellendorffii HOM05D005908 ORTHO05D007235 4.2e-28 129.4 229 38.4
CSS0026196 Camellia sinensis var. sinensis HOM05D005908 ORTHO05D007235 1.0e-26 124.8 101 52.5
CSS0048064 Camellia sinensis var. sinensis HOM05D005908 ORTHO05D007235 1.0e-26 124.8 101 52.5
Actinidia34081 Actinidia chinensis HOM05D005908 ORTHO05D007235 5.2e-26 122.5 146 45.9
Dinv28477 Davidia involucrata HOM05D005908 ORTHO05D007235 1.2e-25 121.3 92 67.4
CSS0007682 Camellia sinensis var. sinensis HOM05D005908 ORTHO05D007235 4.4e-25 119.4 89 69.7
FAN03G2347 Fragaria x ananassa HOM05D005908 ORTHO05D007235 5.7e-25 119.0 153 42.5
FAN03G3234 Fragaria x ananassa HOM05D005908 ORTHO05D007235 1.7e-24 117.5 151 41.7
SMO353G0077 Selaginella moellendorffii HOM05D005908 ORTHO05D007235 1.0e-21 108.2 229 34.1
SEGI_01877 Sequoiadendron giganteum HOM05D005908 ORTHO05D007235 1.5e-20 104.4 161 42.9
Cre12.g537850 Chlamydomonas reinhardtii HOM05D005908 ORTHO05D007235 2.5e-20 103.6 271 31.0
MCO01G567 Micromonas commoda HOM05D005908 ORTHO05D007235 1.2e-19 101.3 254 29.5
CBR_g58789 Chara braunii HOM05D005908 ORTHO05D007235 2.1e-19 100.5 144 38.2
FAN01G0300 Fragaria x ananassa HOM05D005908 ORTHO05D007235 1.3e-13 81.3 89 41.6
MD16G1250200 Malus domestica HOM05D005908 ORTHO05D007235 2.3e-13 80.5 76 55.3
MELO3C031805.2 Cucumis melo HOM05D005908 ORTHO05D007235 2.5e-12 77.0 59 59.3
FvH4_7g29023 Fragaria vesca HOM05D005908 ORTHO05D007235 5.6e-12 75.9 61 59.0
Os10g0522500 Oryza sativa ssp. japonica HOM05D005908 ORTHO05D007235 5.6e-12 75.9 43 76.7
Hma1.2p1_0010F.1_g006900 Hydrangea macrophylla HOM05D005908 ORTHO05D007235 4.4e-09 66.2 57 56.1
MD12G1162900 Malus domestica HOM05D000067 ORTHO05D000097 1.4e-07 61.2 42 66.7


User provided reference genes

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