Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g05971 Brassica carinata HOM05D005109 ORTHO05D006084 1.7e-192 676.0 383 100.0
BolC3t14465H Brassica oleracea HOM05D005109 ORTHO05D006084 1.7e-192 676.0 383 100.0
C03p20590 Brassica napus HOM05D005109 ORTHO05D006084 1.0e-189 666.8 383 99.5
BcaC01g05975 Brassica carinata HOM05D005109 ORTHO05D006084 2.9e-168 595.5 382 90.1
C03p20550 Brassica napus HOM05D005109 ORTHO05D006084 2.9e-168 595.5 382 90.1
BolC3t14435H Brassica oleracea HOM05D005109 ORTHO05D006084 2.9e-168 595.5 382 90.1
A03p17410 Brassica napus HOM05D005109 ORTHO05D006084 3.8e-152 542.0 385 83.1
BraA03t11013Z Brassica rapa HOM05D005109 ORTHO05D006084 3.8e-152 542.0 385 83.1
Sp4g13630 Schrenkiella parvula HOM05D005109 ORTHO05D006084 4.8e-139 498.4 400 74.8
AL163U10030 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 1.5e-132 476.9 422 69.9
BcaB01g04060 Brassica carinata HOM05D005109 ORTHO05D006084 1.5e-132 476.9 396 75.3
Thhalv10016746m.g Eutrema salsugineum HOM05D005109 ORTHO05D006084 9.1e-122 441.0 415 68.0
CARHR124750 Cardamine hirsuta HOM05D005109 ORTHO05D006084 7.2e-119 431.4 402 68.2
AL4G26340 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 8.0e-118 427.9 414 65.2
Aa31LG5G5770 Aethionema arabicum HOM05D005109 ORTHO05D006084 8.5e-104 381.3 391 63.4
AT1G06190 Arabidopsis thaliana HOM05D005109 ORTHO05D006084 1.4e-98 364.0 417 57.8
Carub.0001s0555 Capsella rubella HOM05D005109 ORTHO05D006084 1.2e-92 344.4 424 56.1
THA.LOC104826217 Tarenaya hassleriana HOM05D005109 ORTHO05D006084 3.7e-91 339.3 404 57.7
CARHR005720 Cardamine hirsuta HOM05D005109 ORTHO05D006084 5.4e-90 335.5 423 56.5
Sp1g05000 Schrenkiella parvula HOM05D005109 ORTHO05D006084 5.4e-90 335.5 411 57.4
THA.LOC104800869 Tarenaya hassleriana HOM05D005109 ORTHO05D006084 5.4e-90 335.5 404 57.7
BcaC05g24297 Brassica carinata HOM05D005109 ORTHO05D006084 5.4e-82 308.9 396 55.6
C05p04510 Brassica napus HOM05D005109 ORTHO05D006084 5.4e-82 308.9 396 55.6
BcaB02g06816 Brassica carinata HOM05D005109 ORTHO05D006084 1.6e-81 307.4 410 54.4
A10p04820 Brassica napus HOM05D005109 ORTHO05D006084 4.3e-79 299.3 419 53.2
BolC5t29222H Brassica oleracea HOM05D005109 ORTHO05D006084 8.1e-78 295.0 409 53.3
BraA10t42751Z Brassica rapa HOM05D005109 ORTHO05D006084 1.1e-77 294.7 424 52.4
AT2G31150 Arabidopsis thaliana HOM05D005109 ORTHO05D006084 9.2e-74 281.6 314 60.2
Aa31LG1G7210 Aethionema arabicum HOM05D005109 ORTHO05D006084 3.0e-72 276.6 402 53.0
Thhalv10007829m.g Eutrema salsugineum HOM05D005109 ORTHO05D006084 5.1e-72 275.8 413 52.1
AL1G16170 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 1.5e-71 274.2 416 48.6
Gohir.D08G208700 Gossypium hirsutum HOM05D005109 ORTHO05D006084 2.8e-62 243.4 397 47.6
Gohir.A08G190200 Gossypium hirsutum HOM05D005109 ORTHO05D006084 1.1e-61 241.5 397 47.4
Cpa.g.sc50.15 Carica papaya HOM05D005109 ORTHO05D006084 8.9e-61 238.4 397 46.9
Gorai.004G221100 Gossypium raimondii HOM05D005109 ORTHO05D006084 2.0e-60 237.3 396 47.2
Thecc.01G257200 Theobroma cacao HOM05D005109 ORTHO05D006084 2.2e-59 233.8 395 46.6
Ciclev10024128m.g Citrus clementina HOM05D005109 ORTHO05D006084 3.2e-58 229.9 414 46.6
Duzib133G1173 Durio zibethinus HOM05D005109 ORTHO05D006084 6.0e-57 225.7 399 45.6
Gohir.A11G131200 Gossypium hirsutum HOM05D005109 ORTHO05D006084 1.9e-55 220.7 381 46.2
Sabra02G0030500 Salix brachista HOM05D005109 ORTHO05D006084 1.9e-55 220.7 392 45.7
CANSAT01G1854 Cannabis sativa HOM05D005109 ORTHO05D006084 4.3e-55 219.5 416 45.4
Dinv34633 Davidia involucrata HOM05D005109 ORTHO05D006084 1.6e-54 217.6 371 46.4
Duzib211G0434 Durio zibethinus HOM05D005109 ORTHO05D006084 4.8e-54 216.1 397 47.1
Potri.002G037800 Populus trichocarpa HOM05D005109 ORTHO05D006084 6.9e-53 212.2 400 43.5
Manes.13G034800 Manihot esculenta HOM05D005109 ORTHO05D006084 1.2e-52 211.5 387 44.2
Eucgr.G01947 Eucalyptus grandis HOM05D005109 ORTHO05D006084 1.5e-52 211.1 378 45.8
Gorai.007G146600 Gossypium raimondii HOM05D005109 ORTHO05D006084 1.5e-52 211.1 388 45.1
Nn1g02784 Nelumbo nucifera HOM05D005109 ORTHO05D006084 2.0e-52 210.7 405 44.7
GSVIVG01028346001 Vitis vinifera HOM05D005109 ORTHO05D006084 2.0e-52 210.7 370 46.8
Eucgr.B01549 Eucalyptus grandis HOM05D005109 ORTHO05D006084 3.4e-52 209.9 379 45.9
Peaxi162Scf01280g00016 Petunia axillaris HOM05D005109 ORTHO05D006084 2.9e-51 206.8 397 43.3
Gohir.D11G136900 Gossypium hirsutum HOM05D005109 ORTHO05D006084 6.4e-51 205.7 388 44.3
Cc01_g18260 Coffea canephora HOM05D005109 ORTHO05D006084 1.9e-50 204.1 371 42.6
MBI10_g20266_MAGBIO Magnolia biondii HOM05D005109 ORTHO05D006084 3.2e-50 203.4 381 44.9
Manes.12G033000 Manihot esculenta HOM05D005109 ORTHO05D006084 4.2e-50 203.0 390 41.3
Haze_24641 Corylus avellana HOM05D005109 ORTHO05D006084 5.4e-50 202.6 411 44.5
Duzib138G0302 Durio zibethinus HOM05D005109 ORTHO05D006084 5.4e-50 202.6 412 44.2
QL09p039103 Quercus lobata HOM05D005109 ORTHO05D006084 9.3e-50 201.8 414 42.8
Hma1.2p1_0273F.1_g109610 Hydrangea macrophylla HOM05D005109 ORTHO05D006084 3.9e-48 196.4 381 43.0
CAN.G1147.5 Capsicum annuum HOM05D005109 ORTHO05D006084 6.6e-48 195.7 389 42.2
COL.COLO4_03875 Corchorus olitorius HOM05D005109 ORTHO05D006084 2.5e-47 193.7 396 42.9
Nitab4.5_0000470g0030 Nicotiana tabacum HOM05D005109 ORTHO05D006084 2.5e-47 193.7 338 45.3
Cfa002435 Carpinus fangiana HOM05D005109 ORTHO05D006084 3.3e-47 193.4 423 42.3
PSO832G0134 Papaver somniferum HOM05D005109 ORTHO05D006084 2.1e-46 190.7 400 42.5
CSS0032892 Camellia sinensis var. sinensis HOM05D005109 ORTHO05D006084 2.8e-46 190.3 384 41.4
Lj5g0011614 Lotus japonicus HOM05D005109 ORTHO05D006084 2.8e-46 190.3 384 45.3
EL10As5g23493 Beta vulgaris HOM05D005109 ORTHO05D006084 4.8e-46 189.5 420 39.5
ECA236G0222 Erigeron canadensis HOM05D005109 ORTHO05D006084 4.8e-46 189.5 376 42.8
ClCG07G001090 Citrullus lanatus HOM05D005109 ORTHO05D006084 6.2e-46 189.1 409 41.3
Sopen09g028260 Solanum pennellii HOM05D005109 ORTHO05D006084 6.2e-46 189.1 339 44.0
Oeu063313.1 Olea europaea HOM05D005109 ORTHO05D006084 1.1e-45 188.3 334 44.0
PGR031G1666 Punica granatum HOM05D005109 ORTHO05D006084 1.8e-45 187.6 384 41.7
AUR62011844 Chenopodium quinoa HOM05D005109 ORTHO05D006084 2.4e-45 187.2 325 44.0
PSO210G5198 Papaver somniferum HOM05D005109 ORTHO05D006084 4.0e-45 186.4 403 42.2
Ah.11g049450 Amaranthus hybridus HOM05D005109 ORTHO05D006084 5.3e-45 186.0 394 40.6
Sed0018169 Sechium edule HOM05D005109 ORTHO05D006084 6.9e-45 185.7 401 41.6
PGSC0003DMG400010318 Solanum tuberosum HOM05D005109 ORTHO05D006084 6.9e-45 185.7 338 44.1
FAN15G3301 Fragaria x ananassa HOM05D005109 ORTHO05D006084 9.0e-45 185.3 387 41.1
DCAR_012551 Daucus carota HOM05D005109 ORTHO05D006084 1.2e-44 184.9 340 42.1
CiPaw.03G265200 Carya illinoinensis HOM05D005109 ORTHO05D006084 3.4e-44 183.3 384 42.4
HanXRQChr04g0110521 Helianthus annuus HOM05D005109 ORTHO05D006084 4.5e-44 183.0 388 42.0
Solyc09g025260.4 Solanum lycopersicum HOM05D005109 ORTHO05D006084 5.8e-44 182.6 338 41.4
arahy.Tifrunner.gnm1.ann1.A1W3C7 Arachis hypogaea HOM05D005109 ORTHO05D006084 1.7e-43 181.0 393 41.5
RcHm_v2.0_Chr6g0287941 Rosa chinensis HOM05D005109 ORTHO05D006084 2.2e-43 180.6 408 40.7
FvH4_2g21350 Fragaria vesca HOM05D005109 ORTHO05D006084 2.9e-43 180.3 390 42.1
Glyma.10G037400 Glycine max HOM05D005109 ORTHO05D006084 2.9e-43 180.3 383 42.8
Sed0014438 Sechium edule HOM05D005109 ORTHO05D006084 2.9e-43 180.3 431 38.1
TWI18G0717 Tripterygium wilfordii HOM05D005109 ORTHO05D006084 2.9e-43 180.3 395 42.8
MD10G1183500 Malus domestica HOM05D005109 ORTHO05D006084 4.9e-43 179.5 404 42.8
Prupe.8G222600 Prunus persica HOM05D005109 ORTHO05D006084 6.4e-43 179.1 399 40.1
arahy.Tifrunner.gnm1.ann1.ZTJ4VR Arachis hypogaea HOM05D005109 ORTHO05D006084 1.1e-42 178.3 393 41.2
TWI12G1013 Tripterygium wilfordii HOM05D005109 ORTHO05D006084 1.9e-42 177.6 396 41.7
Atru.chr5.1705 Acer truncatum HOM05D005109 ORTHO05D006084 2.4e-42 177.2 388 40.5
MSTRG.17494 Avicennia marina HOM05D005109 ORTHO05D006084 3.2e-42 176.8 391 38.6
Sabra05G0173800 Salix brachista HOM05D005109 ORTHO05D006084 3.2e-42 176.8 380 41.1
MELO3C012881.2 Cucumis melo HOM05D005109 ORTHO05D006084 9.3e-42 175.3 406 40.4
FAN20G2708 Fragaria x ananassa HOM05D005109 ORTHO05D006084 9.3e-42 175.3 386 41.7
Phvul.007G192400 Phaseolus vulgaris HOM05D005109 ORTHO05D006084 1.2e-41 174.9 384 42.2
CsaV3_3G022220 Cucumis sativus L. HOM05D005109 ORTHO05D006084 1.6e-41 174.5 402 40.3
FAN24G2940 Fragaria x ananassa HOM05D005109 ORTHO05D006084 3.5e-41 173.3 390 41.5
MD05G1196200 Malus domestica HOM05D005109 ORTHO05D006084 3.5e-41 173.3 397 41.6
Glyma.13G124000 Glycine max HOM05D005109 ORTHO05D006084 4.6e-41 172.9 383 41.5
VMungo0720G0144 Vigna mungo HOM05D005109 ORTHO05D006084 6.0e-41 172.6 379 42.0
ATR0736G115 Amborella trichopoda HOM05D005109 ORTHO05D006084 3.9e-40 169.9 342 41.5
Lalb_Chr21g0313891 Lupinus albus HOM05D005109 ORTHO05D006084 5.1e-40 169.5 397 41.1
Migut.D00430 Erythranthe guttata HOM05D005109 ORTHO05D006084 9.6e-39 165.2 338 41.7
Potri.005G225200 Populus trichocarpa HOM05D005109 ORTHO05D006084 2.1e-38 164.1 387 38.0
Migut.N02209 Erythranthe guttata HOM05D005109 ORTHO05D006084 2.8e-38 163.7 387 39.3
Ca_28090_v3 Cicer arietinum L. HOM05D005109 ORTHO05D006084 3.7e-38 163.3 397 40.8
TAR633G2233 Trochodendron aralioides HOM05D005109 ORTHO05D006084 6.2e-38 162.5 385 41.3
Lalb_Chr02g0152441 Lupinus albus HOM05D005109 ORTHO05D006084 1.8e-37 161.0 408 39.7
Actinidia09543 Actinidia chinensis HOM05D005109 ORTHO05D006084 2.4e-37 160.6 328 40.2
SalBow4G0920 Salvia bowleyana HOM05D005109 ORTHO05D006084 2.0e-36 157.5 377 39.0
Lalb_Chr06g0170501 Lupinus albus HOM05D005109 ORTHO05D006084 7.6e-36 155.6 454 40.3
TPR.G18473 Trifolium pratense HOM05D005109 ORTHO05D006084 1.7e-35 154.5 391 41.2
Sc17g0000590 Simmondsia chinensis HOM05D005109 ORTHO05D006084 2.9e-35 153.7 377 38.7
Aqoxy5G00221 Aquilegia oxysepala HOM05D005109 ORTHO05D006084 6.5e-35 152.5 429 36.8
DCAR_018491 Daucus carota HOM05D005109 ORTHO05D006084 6.5e-35 152.5 336 38.1
Nitab4.5_0005001g0040 Nicotiana tabacum HOM05D005109 ORTHO05D006084 1.1e-34 151.8 301 42.9
Medtr1g069855 Medicago truncatula HOM05D005109 ORTHO05D006084 4.6e-33 146.4 348 40.8
Cc05_g01680 Coffea canephora HOM05D005109 ORTHO05D006084 1.3e-32 144.8 170 57.1
unitig_8.g3734 Utricularia gibba HOM05D005109 ORTHO05D006084 1.8e-32 144.4 386 33.9
Actinidia07301 Actinidia chinensis HOM05D005109 ORTHO05D006084 8.7e-32 142.1 194 51.5
Zm00001eb258380 Zea mays HOM05D005109 ORTHO05D006084 1.4e-29 134.8 349 37.2
Dinv33475 Davidia involucrata HOM05D005109 ORTHO05D006084 2.4e-29 134.0 180 53.3
Rhsim13G0035600 Rhododendron simsii HOM05D005109 ORTHO05D006084 2.4e-29 134.0 404 32.9
SGA_v2.0_scaffold1G00618 Striga asiatica HOM05D003989 ORTHO05D004626 6.9e-29 132.5 402 35.8
Psat6g041760 Pisum sativum HOM05D005109 ORTHO05D006084 2.0e-28 131.0 340 40.0
vmacro02668 Vaccinium macrocarpon HOM05D005109 ORTHO05D006084 8.5e-27 125.6 346 34.1
SGA_v2.0_scaffold138G35226 Striga asiatica HOM05D003989 ORTHO05D004626 1.6e-25 121.3 297 39.4
Glyma.03G163800 Glycine max HOM05D005109 ORTHO05D006084 2.3e-24 117.5 376 36.2
Os03g0183100 Oryza sativa ssp. japonica HOM05D005109 ORTHO05D006084 7.4e-23 112.5 358 34.1
COL.COLO4_04035 Corchorus olitorius HOM05D005109 ORTHO05D006084 5.3e-21 106.3 270 38.9
Actinidia30161 Actinidia chinensis HOM05D005109 ORTHO05D006084 2.0e-20 104.4 241 37.8
Glyma.19G165100 Glycine max HOM05D005109 ORTHO05D006084 4.5e-20 103.2 373 34.6
HPP92_012858 Vanilla planifolia HOM05D005109 ORTHO05D006084 2.2e-19 100.9 338 36.1
Psat0s1200g0040 Pisum sativum HOM05D005109 ORTHO05D006084 2.6e-12 77.4 274 34.3
Lj1C67T4 Lonicera japonica HOM05D005109 ORTHO05D006084 8.5e-11 72.4 329 31.0
CDE02G3939 Ceratophyllum demersum HOM05D005109 ORTHO05D006084 5.5e-10 69.7 315 27.6
Cpa.g.c44470 Carica papaya HOM05D005109 ORTHO05D006084 3.6e-09 67.0 156 41.0


User provided reference genes

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