Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g05900 Brassica carinata HOM05D002380 ORTHO05D008286 0.0e+00 1167.5 587 100.0
C03p21270 Brassica napus HOM05D002380 ORTHO05D008286 0.0e+00 1162.9 587 99.5
BolC3t14508H Brassica oleracea HOM05D002380 ORTHO05D008286 0.0e+00 1154.4 587 98.8
BraA03t11082Z Brassica rapa HOM05D002380 ORTHO05D008286 0.0e+00 1137.9 587 97.1
A03p18220 Brassica napus HOM05D002380 ORTHO05D008286 0.0e+00 1135.6 587 96.9
BcaB01g03970 Brassica carinata HOM05D002380 ORTHO05D008286 0.0e+00 1122.5 588 95.6
Thhalv10016422m.g Eutrema salsugineum HOM05D002380 ORTHO05D008286 0.0e+00 1106.3 587 93.9
Sp4g14960 Schrenkiella parvula HOM05D002380 ORTHO05D008286 0.0e+00 1099.3 587 93.0
Carub.0004s1397 Capsella rubella HOM05D002380 ORTHO05D008286 0.0e+00 1090.9 587 92.3
CARHR126480 Cardamine hirsuta HOM05D002380 ORTHO05D008286 0.0e+00 1083.2 587 92.0
Aa31LG5G4710 Aethionema arabicum HOM05D002380 ORTHO05D008286 1.5e-304 1048.9 587 88.6
AL4G28040 Arabidopsis lyrata HOM05D002380 ORTHO05D008286 3.7e-300 1034.2 540 94.4
THA.LOC104826140 Tarenaya hassleriana HOM05D002380 ORTHO05D008286 4.0e-278 961.1 587 81.8
Cfa014331 Carpinus fangiana HOM05D002380 ORTHO05D008286 1.9e-248 862.4 587 72.1
FvH4_6g42610 Fragaria vesca HOM05D002380 ORTHO05D008286 1.3e-247 859.8 587 71.2
Gohir.A07G186600 Gossypium hirsutum HOM05D002380 ORTHO05D008286 1.3e-247 859.8 589 71.5
Gohir.D07G193100 Gossypium hirsutum HOM05D002380 ORTHO05D008286 2.1e-247 859.0 589 71.6
Gorai.001G216200 Gossypium raimondii HOM05D002380 ORTHO05D008286 4.8e-247 857.8 589 71.5
RcHm_v2.0_Chr2g0158461 Rosa chinensis HOM05D002380 ORTHO05D008286 1.5e-245 852.8 587 71.2
Potri.014G156800 Populus trichocarpa HOM05D002380 ORTHO05D008286 2.0e-245 852.4 588 70.7
GSVIVG01030484001 Vitis vinifera HOM05D002380 ORTHO05D008286 2.6e-245 852.0 585 71.3
ClCG02G002150 Citrullus lanatus HOM05D002380 ORTHO05D008286 3.4e-245 851.7 553 73.4
Duzib138G0368 Durio zibethinus HOM05D002380 ORTHO05D008286 2.2e-244 849.0 590 70.3
Ciclev10014719m.g Citrus clementina HOM05D002380 ORTHO05D008286 2.9e-244 848.6 588 70.7
FAN05G1087 Fragaria x ananassa HOM05D002380 ORTHO05D008286 6.5e-244 847.4 616 68.0
MD09G1112100 Malus domestica HOM05D002380 ORTHO05D008286 3.2e-243 845.1 586 70.5
CiPaw.04G112000 Carya illinoinensis HOM05D002380 ORTHO05D008286 4.2e-243 844.7 586 70.6
Nn1g03403 Nelumbo nucifera HOM05D002380 ORTHO05D008286 5.5e-243 844.3 585 70.3
Medtr8g465870 Medicago truncatula HOM05D002380 ORTHO05D008286 2.7e-242 842.0 587 70.0
CsaV3_7G003340 Cucumis sativus L. HOM05D002380 ORTHO05D008286 2.3e-241 839.0 553 72.5
Glyma.14G046600 Glycine max HOM05D002380 ORTHO05D008286 3.0e-241 838.6 587 70.2
Sed0027871 Sechium edule HOM05D002380 ORTHO05D008286 6.7e-241 837.4 554 72.7
Prupe.3G212600 Prunus persica HOM05D002380 ORTHO05D008286 1.9e-240 835.9 538 75.3
QL08p031162 Quercus lobata HOM05D002380 ORTHO05D008286 1.9e-240 835.9 585 71.1
LjContig00564g0004339 Lotus japonicus HOM05D002380 ORTHO05D008286 2.5e-240 835.5 587 69.7
LjContig00564g0001978 Lotus japonicus HOM05D002380 ORTHO05D008286 4.3e-240 834.7 587 69.7
arahy.Tifrunner.gnm1.ann1.Y9X1U6 Arachis hypogaea HOM05D002380 ORTHO05D008286 9.6e-240 833.6 593 68.6
arahy.Tifrunner.gnm1.ann1.C2B2I7 Arachis hypogaea HOM05D002380 ORTHO05D008286 2.1e-239 832.4 602 68.1
Thecc.01G180100 Theobroma cacao HOM05D002380 ORTHO05D008286 2.1e-239 832.4 588 69.7
VMungo0647G2578 Vigna mungo HOM05D002380 ORTHO05D008286 3.7e-239 831.6 587 69.5
FAN14G4830 Fragaria x ananassa HOM05D002380 ORTHO05D008286 1.1e-238 830.1 611 68.1
CSS0029680 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D008286 2.0e-237 825.9 551 71.7
PGR042G3960 Punica granatum HOM05D002380 ORTHO05D008286 3.4e-237 825.1 595 69.2
AUR62037919 Chenopodium quinoa HOM05D002380 ORTHO05D008286 1.3e-236 823.2 594 68.4
AUR62040170 Chenopodium quinoa HOM05D002380 ORTHO05D008286 1.7e-236 822.8 594 68.7
PSO541G2284 Papaver somniferum HOM05D002380 ORTHO05D008286 5.0e-236 821.2 595 67.2
CANSAT64G0203 Cannabis sativa HOM05D002380 ORTHO05D008286 1.4e-235 819.7 589 67.9
Sabra14G0118600 Salix brachista HOM05D002380 ORTHO05D008286 5.5e-235 817.8 667 62.2
Cc05_g03220 Coffea canephora HOM05D002380 ORTHO05D008286 9.3e-235 817.0 549 71.6
Eucgr.A01100 Eucalyptus grandis HOM05D002380 ORTHO05D008286 1.2e-234 816.6 561 70.2
Atru.chr6.3236 Acer truncatum HOM05D002380 ORTHO05D008286 1.6e-234 816.2 590 70.3
Hma1.2p1_0445F.1_g154520 Hydrangea macrophylla HOM05D002380 ORTHO05D008286 2.1e-234 815.8 551 71.1
ECA234G2702 Erigeron canadensis HOM05D002380 ORTHO05D008286 3.5e-234 815.1 558 70.3
TWI18G0959 Tripterygium wilfordii HOM05D002380 ORTHO05D008286 4.6e-234 814.7 587 68.7
Actinidia13740 Actinidia chinensis HOM05D002380 ORTHO05D008286 6.1e-234 814.3 557 70.2
HanXRQChr10g0306601 Helianthus annuus HOM05D002380 ORTHO05D008286 8.7e-233 810.4 551 70.2
Phvul.008G211500 Phaseolus vulgaris HOM05D002380 ORTHO05D008286 1.5e-232 809.7 593 68.5
SalBow1G4831 Salvia bowleyana HOM05D002380 ORTHO05D008286 3.3e-232 808.5 547 70.0
SalBow1G6561 Salvia bowleyana HOM05D002380 ORTHO05D008286 2.8e-231 805.4 547 70.0
CAN.G855.60 Capsicum annuum HOM05D002380 ORTHO05D008286 8.2e-231 803.9 577 68.5
Sopen01g045360 Solanum pennellii HOM05D002380 ORTHO05D008286 5.3e-230 801.2 583 67.9
Solyc01g102950.3 Solanum lycopersicum HOM05D002380 ORTHO05D008286 1.3e-228 796.6 582 67.5
Migut.H01235 Erythranthe guttata HOM05D002380 ORTHO05D008286 3.8e-228 795.0 549 69.8
PSO675G4452 Papaver somniferum HOM05D002380 ORTHO05D008286 1.2e-226 790.0 589 65.7
Nitab4.5_0005164g0050 Nicotiana tabacum HOM05D002380 ORTHO05D006960 8.8e-225 783.9 587 66.1
Lj1A778T40 Lonicera japonica HOM05D002380 ORTHO05D008286 9.7e-224 780.4 625 63.0
Os08g0422000 Oryza sativa ssp. japonica HOM05D002380 ORTHO05D008286 2.2e-223 779.2 543 68.9
CDE04G2212 Ceratophyllum demersum HOM05D002380 ORTHO05D008286 3.2e-219 765.4 552 67.2
DCAR_019750 Daucus carota HOM05D002380 ORTHO05D008286 6.7e-217 757.7 577 64.8
Lsat_1_v5_gn_5_123621 Lactuca sativa HOM05D002380 ORTHO05D008286 9.7e-216 753.8 556 66.7
Lalb_Chr04g0249901 Lupinus albus HOM05D002380 ORTHO05D008286 2.4e-214 749.2 501 71.1
Rhsim06G0166100 Rhododendron simsii HOM05D002380 ORTHO05D008286 2.0e-213 746.1 576 63.4
AUR62044039 Chenopodium quinoa HOM05D002380 ORTHO05D008286 3.5e-213 745.3 594 64.0
ATR0059G008 Amborella trichopoda HOM05D002380 ORTHO05D008286 2.9e-212 742.3 546 64.3
Ca_06119_v3 Cicer arietinum L. HOM05D002380 ORTHO05D008286 3.2e-211 738.8 555 66.7
Psat0s2606g0080 Pisum sativum HOM05D002380 ORTHO05D008286 7.2e-211 737.6 526 70.0
EL10Ac7g16733 Beta vulgaris HOM05D002380 ORTHO05D008286 8.0e-210 734.2 583 63.6
Peaxi162Scf00011g02118 Petunia axillaris HOM05D002380 ORTHO05D008286 8.0e-210 734.2 557 65.0
TAR626G1235 Trochodendron aralioides HOM05D002380 ORTHO05D008286 4.8e-207 724.9 511 70.1
Nitab4.5_0003247g0030 Nicotiana tabacum HOM05D002380 ORTHO05D006960 9.8e-200 700.7 587 60.5
MELO3C018839.2 Cucumis melo HOM05D002380 ORTHO05D008286 1.3e-199 700.3 512 67.8
AT2G32640 Arabidopsis thaliana HOM05D002380 ORTHO05D008286 4.1e-198 695.3 386 90.7
Manes.12G071600 Manihot esculenta HOM05D002380 ORTHO05D008286 4.1e-198 695.3 493 69.2
Sc21g0001190 Simmondsia chinensis HOM05D002380 ORTHO05D008286 2.0e-197 693.0 486 69.8
HPP92_026432 Vanilla planifolia HOM05D002380 ORTHO05D008286 3.2e-195 685.6 472 68.4
Haze_12786 Corylus avellana HOM05D002380 ORTHO05D008286 7.0e-190 667.9 585 60.9
vmacro12176 Vaccinium macrocarpon HOM05D002380 ORTHO05D008286 4.0e-185 652.1 592 57.3
Mapoly0041s0126 Marchantia polymorpha HOM05D002380 ORTHO05D008286 8.3e-183 644.4 546 56.0
Pp3c11_22720 Physcomitrium patens HOM05D002380 ORTHO05D008286 1.8e-182 643.3 570 54.4
Hma1.2p1_0445F.1_g154530 Hydrangea macrophylla HOM05D002380 ORTHO05D008286 8.9e-177 624.4 539 58.6
AagrBONN_evm.TU.Sc2ySwM_368.2332 Anthoceros agrestis HOM05D002380 ORTHO05D008286 6.8e-169 598.2 541 54.9
Dinv08737 Davidia involucrata HOM05D002380 ORTHO05D008286 1.4e-161 573.9 456 63.8
Aqoxy1G02993 Aquilegia oxysepala HOM05D002380 ORTHO05D008286 4.0e-161 572.4 550 54.5
Cpa.g.sc132.5 Carica papaya HOM05D002380 ORTHO05D008286 1.1e-150 537.7 382 68.6
FAN02G0433 Fragaria x ananassa HOM05D002380 ORTHO05D008286 1.7e-148 530.4 564 53.4
Hma1.2p1_0895F.1_g233700 Hydrangea macrophylla HOM05D002380 ORTHO05D008286 1.3e-143 514.2 319 76.2
Hund20419 Selenicereus undatus HOM05D002380 ORTHO05D008286 7.9e-141 505.0 320 73.1
COL.COLO4_21855 Corchorus olitorius HOM05D002380 ORTHO05D008286 2.8e-138 496.5 335 69.3
PGSC0003DMG400020719 Solanum tuberosum HOM05D002380 ORTHO05D008286 5.3e-137 492.3 309 74.1
SGA_v2.0_scaffold159G37563 Striga asiatica HOM05D002380 ORTHO05D001198 1.2e-133 481.1 547 49.5
Zm00001eb179140 Zea mays HOM05D002380 ORTHO05D008286 6.7e-132 475.3 447 54.8
Cre06.g264250 Chlamydomonas reinhardtii HOM05D002380 ORTHO05D008286 2.4e-129 466.8 574 42.3
Ah.15g091260 Amaranthus hybridus HOM05D002380 ORTHO05D008286 7.6e-120 435.3 400 58.2
TPR.G26188 Trifolium pratense HOM05D002380 ORTHO05D008286 4.2e-118 429.5 336 64.3
SMO111G0098 Selaginella moellendorffii HOM05D002380 ORTHO05D008286 7.7e-104 382.1 366 51.9
Cre04.g221550 Chlamydomonas reinhardtii HOM05D002380 ORTHO05D008286 3.0e-100 370.2 628 35.8
Cpa.g.sc132.4 Carica papaya HOM05D002380 ORTHO05D008286 6.1e-93 345.9 206 81.6
MBI19_g44049_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D008286 1.4e-81 308.1 233 65.2
unitig_62.g23230 Utricularia gibba HOM05D002380 ORTHO05D008286 2.2e-79 300.8 244 60.7
MBI19_g40900_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D008286 6.0e-56 223.0 140 72.1
SEGI_31657 Sequoiadendron giganteum HOM05D002380 ORTHO05D008286 3.3e-54 217.2 160 64.4
SEGI_17941 Sequoiadendron giganteum HOM05D002380 ORTHO05D008286 1.4e-41 175.3 158 55.7
COL.COLO4_21854 Corchorus olitorius HOM05D002380 ORTHO05D008286 2.4e-41 174.5 130 65.4
CBR_g8452 Chara braunii HOM05D002380 ORTHO05D008286 6.0e-40 169.9 130 59.2
Aqoxy1G02984 Aquilegia oxysepala HOM05D002380 ORTHO05D008286 2.1e-32 144.8 97 68.0
MBI19_g42463_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D008286 2.5e-30 137.9 160 47.5
Hund20420 Selenicereus undatus HOM05D002380 ORTHO05D010615 1.4e-28 132.1 85 72.9
CBR_g12620 Chara braunii HOM05D005350 ORTHO05D008838 7.6e-27 126.3 100 54.0
SEGI_28059 Sequoiadendron giganteum HOM05D002380 ORTHO05D008286 7.9e-24 116.3 69 78.3
LjContig00564g0015808 Lotus japonicus HOM05D002380 ORTHO05D008286 6.2e-21 106.7 64 73.4
Actinidia09730 Actinidia chinensis HOM05D002380 ORTHO05D008286 2.2e-18 98.2 105 52.4
Gohir.A07G186850 Gossypium hirsutum HOM05D002380 ORTHO05D026288 1.0e-15 89.4 65 66.2
CBR_g8454 Chara braunii HOM05D002380 ORTHO05D008286 2.1e-13 81.6 85 44.7
SEGI_40123 Sequoiadendron giganteum HOM05D002380 ORTHO05D008286 1.2e-11 75.9 42 83.3
Lalb_Chr04g0249911 Lupinus albus HOM05D002380 ORTHO05D026288 2.9e-10 71.2 85 48.2
Actinidia09729 Actinidia chinensis HOM05D002380 ORTHO05D026288 4.6e-08 63.9 56 57.1
CBR_g8455 Chara braunii HOM05D002380 ORTHO05D008286 7.4e-06 56.6 61 49.2
CAN.G96.10 Capsicum annuum HOM05D002380 ORTHO05D026288 9.7e-06 56.2 34 73.5


User provided reference genes

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