Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g05888 Brassica carinata HOM05D007973 ORTHO05D011027 8.1e-169 597.0 312 100.0
C03p21420 Brassica napus HOM05D007973 ORTHO05D011027 6.8e-168 594.0 312 99.7
BolC3t14525H Brassica oleracea HOM05D007973 ORTHO05D011027 4.2e-157 558.1 306 95.8
BcaB01g03962 Brassica carinata HOM05D007973 ORTHO05D011027 3.6e-116 422.2 305 77.7
BcaB01g03963 Brassica carinata HOM05D007973 ORTHO05D011027 8.8e-115 417.5 289 79.6
BcaC01g05890 Brassica carinata HOM05D007973 ORTHO05D011027 5.2e-83 312.0 224 77.2
Sp4g15210 Schrenkiella parvula HOM05D007973 ORTHO05D011027 9.8e-66 254.6 228 64.9
AL4G28320 Arabidopsis lyrata HOM05D007973 ORTHO05D011027 4.9e-57 225.7 338 45.9
Thhalv10017685m.g Eutrema salsugineum HOM05D007973 ORTHO05D011027 4.1e-56 222.6 378 42.3
BcaC01g05892 Brassica carinata HOM05D007973 ORTHO05D011027 3.1e-51 206.5 134 79.1
Thhalv10017705m.g Eutrema salsugineum HOM05D007973 ORTHO05D011027 2.9e-49 199.9 347 42.4
Carub.0004s1425 Capsella rubella HOM05D007973 ORTHO05D011027 6.4e-49 198.7 325 44.3
Sp4g15420 Schrenkiella parvula HOM05D007973 ORTHO05D011027 5.1e-46 189.1 241 52.7
AL4G22500 Arabidopsis lyrata HOM05D007973 ORTHO05D011363 3.6e-36 156.4 313 38.7
AL4G22510 Arabidopsis lyrata HOM05D007973 ORTHO05D011363 3.6e-36 156.4 313 38.7
AL4G28640 Arabidopsis lyrata HOM05D007973 ORTHO05D011027 1.3e-33 147.9 277 42.2
AT2G13640 Arabidopsis thaliana HOM05D007973 ORTHO05D011363 1.7e-33 147.5 345 34.2
AT2G32820 Arabidopsis thaliana HOM05D007973 ORTHO05D011027 6.4e-33 145.6 257 42.4
AT2G33300 Arabidopsis thaliana HOM05D007973 ORTHO05D011027 6.4e-33 145.6 180 51.7
AT5G27310 Arabidopsis thaliana HOM05D007973 ORTHO05D011363 1.6e-31 141.0 343 32.9
AT2G27780 Arabidopsis thaliana HOM05D007973 ORTHO05D011363 2.7e-31 140.2 350 33.7
Carub.0004s1401 Capsella rubella HOM05D007973 ORTHO05D011363 2.7e-31 140.2 355 33.0
C04p17050 Brassica napus HOM05D007973 ORTHO05D011363 7.9e-31 138.7 319 32.9
BolC4t23258H Brassica oleracea HOM05D007973 ORTHO05D011363 7.9e-31 138.7 319 32.9
BcaB02g10456 Brassica carinata HOM05D007973 ORTHO05D011363 1.3e-30 137.9 318 33.6
BcaB02g10484 Brassica carinata HOM05D007973 ORTHO05D011363 3.3e-29 133.3 308 34.4
CARHR126530 Cardamine hirsuta HOM05D007973 ORTHO05D011363 7.4e-29 132.1 349 33.5
Sp4g14980 Schrenkiella parvula HOM05D007973 ORTHO05D011363 1.6e-28 131.0 371 31.0
CARHR120790 Cardamine hirsuta HOM05D007973 ORTHO05D011027 1.1e-27 128.3 171 49.7
A05p12970 Brassica napus HOM05D007973 ORTHO05D011363 1.4e-27 127.9 305 30.5
BcaC01g05861 Brassica carinata HOM05D007973 ORTHO05D011027 2.4e-27 127.1 117 59.8
A03p18360 Brassica napus HOM05D007973 ORTHO05D011027 2.4e-27 127.1 162 49.4
A05p13330 Brassica napus HOM05D007973 ORTHO05D011363 2.4e-27 127.1 334 30.8
BraA05t20272Z Brassica rapa HOM05D007973 ORTHO05D011363 2.4e-27 127.1 334 30.8
C04p17440 Brassica napus HOM05D007973 ORTHO05D011363 4.0e-27 126.3 338 31.4
BraA03t11099Z Brassica rapa HOM05D007973 ORTHO05D011027 5.3e-27 125.9 162 46.9
BcaC01g05887 Brassica carinata HOM05D007973 ORTHO05D011027 6.9e-27 125.6 167 50.9
BraA05t20237Z Brassica rapa HOM05D007973 ORTHO05D011363 6.9e-27 125.6 305 30.2
BcaB01g03937 Brassica carinata HOM05D007973 ORTHO05D011027 9.0e-27 125.2 142 52.1
BcaB02g10486 Brassica carinata HOM05D007973 ORTHO05D011363 9.0e-27 125.2 299 32.4
C03p21430 Brassica napus HOM05D007973 ORTHO05D011027 2.0e-26 124.0 96 66.7
BolC3t14526H Brassica oleracea HOM05D007973 ORTHO05D011027 2.0e-26 124.0 96 66.7
BcaB01g03938 Brassica carinata HOM05D007973 ORTHO05D011027 2.6e-26 123.6 96 64.6
BcaB01g03935 Brassica carinata HOM05D007973 ORTHO05D011027 4.5e-26 122.9 204 41.2
BolC4t23294H Brassica oleracea HOM05D007973 ORTHO05D011363 4.5e-26 122.9 299 33.1
THA.LOC104820138 Tarenaya hassleriana HOM05D007973 ORTHO05D011027 7.6e-26 122.1 371 31.3
THA.LOC104820139 Tarenaya hassleriana HOM05D007973 ORTHO05D011027 7.6e-26 122.1 386 31.1
C03p21640 Brassica napus HOM05D007973 ORTHO05D011027 1.3e-25 121.3 91 68.1
BolC3t14548H Brassica oleracea HOM05D007973 ORTHO05D011027 1.3e-25 121.3 91 68.1
AT2G33090 Arabidopsis thaliana HOM05D007973 ORTHO05D011027 8.4e-25 118.6 134 50.7
A05p12940 Brassica napus HOM05D007973 ORTHO05D011363 1.1e-24 118.2 299 31.1
BraA05t20234Z Brassica rapa HOM05D007973 ORTHO05D011363 1.1e-24 118.2 299 31.1
Thhalv10023971m.g Eutrema salsugineum HOM05D007973 ORTHO05D011027 1.4e-24 117.9 178 44.9
BcaB02g10454 Brassica carinata HOM05D007973 ORTHO05D011363 5.5e-24 115.9 299 31.4
BcaC02g11344 Brassica carinata HOM05D007973 ORTHO05D011363 3.9e-22 109.8 310 30.0
Thhalv10024105m.g Eutrema salsugineum HOM05D007973 ORTHO05D011027 2.1e-20 104.0 205 40.0
BcaC02g11347 Brassica carinata HOM05D007973 ORTHO05D011363 3.4e-18 96.7 299 30.1
Aa31LG10G13500 Aethionema arabicum HOM05D007973 ORTHO05D011027 5.8e-18 95.9 88 54.5
Aa31LG10G13910 Aethionema arabicum HOM05D007973 ORTHO05D011027 7.6e-18 95.5 87 55.2
THA.LOC104819096 Tarenaya hassleriana HOM05D007973 ORTHO05D011027 3.8e-17 93.2 140 42.9
THA.LOC104813254 Tarenaya hassleriana HOM05D007973 ORTHO05D011027 4.9e-17 92.8 96 51.0
THA.LOC104798702 Tarenaya hassleriana HOM05D007973 ORTHO05D011027 5.5e-16 89.4 97 49.5
AL6G33790 Arabidopsis lyrata HOM05D007973 ORTHO05D011027 7.1e-16 89.0 227 34.8
C04p17030 Brassica napus HOM05D007973 ORTHO05D011363 7.9e-15 85.5 103 44.7
A05p13350 Brassica napus HOM05D007973 ORTHO05D011363 5.1e-14 82.8 105 46.7
BraA05t20274Z Brassica rapa HOM05D007973 ORTHO05D011363 5.1e-14 82.8 105 46.7
BolC8t48477H Brassica oleracea HOM05D007973 ORTHO05D011363 1.3e-12 78.2 257 29.6
CARHR123860 Cardamine hirsuta HOM05D007973 ORTHO05D011363 1.3e-12 78.2 136 39.7
BolC8t48474H Brassica oleracea HOM05D007973 ORTHO05D011363 2.8e-12 77.0 257 29.6
BcaC07g38070 Brassica carinata HOM05D007973 ORTHO05D011363 7.6e-10 68.9 265 27.9
Cpa.g.sc17.122 Carica papaya HOM05D002276 ORTHO05D002381 3.8e-09 66.6 81 46.9
Cpa.g.sc17.136 Carica papaya HOM05D002276 ORTHO05D002381 3.2e-08 63.5 96 41.7
Cpa.g.c30173.2 Carica papaya HOM05D002276 ORTHO05D002381 4.2e-08 63.2 81 44.4
Cpa.g.c34878 Carica papaya HOM05D002276 ORTHO05D002381 7.2e-08 62.4 96 40.6
Cpa.g.sc17.144 Carica papaya HOM05D002276 ORTHO05D002381 7.2e-08 62.4 96 40.6
Cpa.g.c31254 Carica papaya HOM05D002276 ORTHO05D002381 1.2e-07 61.6 81 43.2
Cpa.g.sc17.140 Carica papaya HOM05D002276 ORTHO05D002381 1.2e-07 61.6 96 40.6
Cpa.g.sc17.145 Carica papaya HOM05D002276 ORTHO05D002381 1.2e-07 61.6 81 43.2
Cpa.g.sc736.3 Carica papaya HOM05D002276 ORTHO05D002381 1.2e-07 61.6 83 41.0
Cpa.g.c27218.2 Carica papaya HOM05D002276 ORTHO05D002381 1.6e-07 61.2 96 40.6
Cpa.g.sc17.131 Carica papaya HOM05D002276 ORTHO05D002381 1.6e-07 61.2 81 42.0
Sp4g14560 Schrenkiella parvula HOM05D007973 ORTHO05D011363 1.6e-07 61.2 76 43.4
GSVIVG01030171001 Vitis vinifera HOM05D002276 ORTHO05D002381 4.6e-07 59.7 87 37.9
Aa31LG6G8590 Aethionema arabicum HOM05D007973 ORTHO05D011363 6.1e-07 59.3 87 41.4
Cpa.g.c40325 Carica papaya HOM05D002276 ORTHO05D002381 6.1e-07 59.3 96 39.6
TAR623G1532 Trochodendron aralioides HOM05D002276 ORTHO05D002381 6.1e-07 59.3 91 35.2
Eucgr.A00774 Eucalyptus grandis HOM05D002276 ORTHO05D002381 7.9e-07 58.9 95 36.8
PGR031G2695 Punica granatum HOM05D002276 ORTHO05D002381 1.0e-06 58.5 91 37.4
TAR369G0520 Trochodendron aralioides HOM05D002276 ORTHO05D002381 1.0e-06 58.5 91 35.2
Cpa.g.sc86.75 Carica papaya HOM05D002276 ORTHO05D002381 1.3e-06 58.2 90 38.9
Gohir.A09G213664 Gossypium hirsutum HOM05D002276 ORTHO05D002381 1.8e-06 57.8 87 37.9
Manes.09G123400 Manihot esculenta HOM05D002276 ORTHO05D002381 2.3e-06 57.4 90 37.8
Cpa.g.sc6.370 Carica papaya HOM05D002276 ORTHO05D002381 3.0e-06 57.0 80 38.8
Cpa.g.sc17.139 Carica papaya HOM05D007973 ORTHO05D011027 3.9e-06 56.6 68 48.5
Gohir.D09G215100 Gossypium hirsutum HOM05D002276 ORTHO05D002381 3.9e-06 56.6 87 36.8
Gorai.006G235600 Gossypium raimondii HOM05D002276 ORTHO05D002381 3.9e-06 56.6 87 36.8
Cpa.g.sc956.1 Carica papaya HOM05D002276 ORTHO05D002381 5.1e-06 56.2 72 47.2
Thecc.10G184700 Theobroma cacao HOM05D002276 ORTHO05D002381 6.7e-06 55.8 96 38.5


User provided reference genes

Program Settings