Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g05462 Brassica carinata HOM05D004501 ORTHO05D004944 0.0e+00 1760.0 882 100.0
C03p26410 Brassica napus HOM05D004501 ORTHO05D004944 0.0e+00 1462.6 902 85.4
Sp4g22100 Schrenkiella parvula HOM05D004501 ORTHO05D004944 0.0e+00 1333.5 976 73.7
BraA04t18485Z Brassica rapa HOM05D004501 ORTHO05D004944 0.0e+00 1323.9 955 74.2
AL4G37360 Arabidopsis lyrata HOM05D004501 ORTHO05D004944 0.0e+00 1319.7 973 73.6
A04p30230 Brassica napus HOM05D004501 ORTHO05D004944 0.0e+00 1318.1 955 73.7
Thhalv10016197m.g Eutrema salsugineum HOM05D004501 ORTHO05D004944 0.0e+00 1318.1 977 72.8
BolC4t28262H Brassica oleracea HOM05D004501 ORTHO05D004944 0.0e+00 1315.4 962 74.0
C04p67630 Brassica napus HOM05D004501 ORTHO05D004944 0.0e+00 1314.3 959 73.6
AT2G39810 Arabidopsis thaliana HOM05D004501 ORTHO05D004944 0.0e+00 1311.2 970 73.0
CARHR134700 Cardamine hirsuta HOM05D004501 ORTHO05D004944 0.0e+00 1297.0 974 72.7
BcaB02g09084 Brassica carinata HOM05D004501 ORTHO05D004944 0.0e+00 1296.2 967 72.5
Carub.0004s2192 Capsella rubella HOM05D004501 ORTHO05D004944 0.0e+00 1283.1 973 72.3
BcaB01g03573 Brassica carinata HOM05D004501 ORTHO05D004944 0.0e+00 1278.1 930 74.0
Aa31LG5G19800 Aethionema arabicum HOM05D004501 ORTHO05D004944 0.0e+00 1152.9 967 65.7
THA.LOC104810067 Tarenaya hassleriana HOM05D004501 ORTHO05D004944 6.8e-306 1053.9 976 59.7
BolC3t15027H Brassica oleracea HOM05D004501 ORTHO05D004944 1.2e-302 1043.1 584 91.1
QL12p011237 Quercus lobata HOM05D004501 ORTHO05D004944 1.8e-237 826.6 978 48.8
Cfa012694 Carpinus fangiana HOM05D004501 ORTHO05D004944 4.5e-233 812.0 933 50.5
Atru.chr9.1263 Acer truncatum HOM05D004501 ORTHO05D004944 8.5e-232 807.7 999 48.1
Potri.001G155200 Populus trichocarpa HOM05D004501 ORTHO05D004944 3.0e-229 799.3 962 47.7
Thecc.03G247200 Theobroma cacao HOM05D004501 ORTHO05D004944 5.2e-229 798.5 988 47.6
Ciclev10018712m.g Citrus clementina HOM05D004501 ORTHO05D004944 1.8e-226 790.0 992 47.1
Haze_07939 Corylus avellana HOM05D004501 ORTHO05D004944 4.1e-226 788.9 997 47.2
MD04G1060900 Malus domestica HOM05D004501 ORTHO05D004944 2.7e-225 786.2 970 47.3
vmacro14139 Vaccinium macrocarpon HOM05D004501 ORTHO05D004944 1.0e-224 784.3 990 46.4
CiPaw.11G082400 Carya illinoinensis HOM05D004501 ORTHO05D004944 1.7e-224 783.5 914 49.2
FAN08G1352 Fragaria x ananassa HOM05D004501 ORTHO05D004944 2.7e-222 776.2 999 46.4
Eucgr.E00402 Eucalyptus grandis HOM05D004501 ORTHO05D004944 1.0e-221 774.2 744 55.5
Sabra03G0049600 Salix brachista HOM05D004501 ORTHO05D004944 1.8e-221 773.5 963 47.0
RcHm_v2.0_Chr7g0204151 Rosa chinensis HOM05D004501 ORTHO05D004944 1.5e-220 770.4 1000 46.8
FvH4_5g19540 Fragaria vesca HOM05D004501 ORTHO05D004944 7.5e-220 768.1 1001 46.4
Potri.003G079700 Populus trichocarpa HOM05D004501 ORTHO05D004944 3.7e-219 765.8 947 46.9
TWI15G0617 Tripterygium wilfordii HOM05D004501 ORTHO05D004944 1.8e-218 763.5 984 46.3
Sabra01G0124800 Salix brachista HOM05D004501 ORTHO05D004944 3.1e-218 762.7 809 51.4
COL.COLO4_37109 Corchorus olitorius HOM05D004501 ORTHO05D004944 1.6e-217 760.4 963 46.4
Manes.01G084200 Manihot esculenta HOM05D004501 ORTHO05D004944 1.6e-217 760.4 963 47.2
FAN13G2915 Fragaria x ananassa HOM05D004501 ORTHO05D004944 2.7e-217 759.6 1005 46.2
Sed0022861 Sechium edule HOM05D004501 ORTHO05D004944 2.7e-217 759.6 990 45.1
PGSC0003DMG400026239 Solanum tuberosum HOM05D004501 ORTHO05D004944 2.7e-217 759.6 739 54.7
Lj2C224T11 Lonicera japonica HOM05D004501 ORTHO05D004944 7.7e-217 758.1 788 52.2
Ca_24594_v3 Cicer arietinum L. HOM05D004501 ORTHO05D004944 8.6e-216 754.6 962 45.7
Sc01g0008260 Simmondsia chinensis HOM05D004501 ORTHO05D004944 2.5e-215 753.1 774 52.1
CsaV3_5G004460 Cucumis sativus L. HOM05D004501 ORTHO05D004944 4.2e-215 752.3 978 45.1
Sopen08g026820 Solanum pennellii HOM05D004501 ORTHO05D004944 7.2e-215 751.5 739 54.0
Gorai.008G233400 Gossypium raimondii HOM05D004501 ORTHO05D004944 2.8e-214 749.6 993 46.3
PGR042G0255 Punica granatum HOM05D004501 ORTHO05D004944 2.8e-214 749.6 990 45.5
CAN.G1178.8 Capsicum annuum HOM05D004501 ORTHO05D004944 1.0e-213 747.7 965 46.2
Nn1g00910 Nelumbo nucifera HOM05D004501 ORTHO05D004944 2.3e-213 746.5 812 51.0
Solyc08g078320.3 Solanum lycopersicum HOM05D004501 ORTHO05D004944 4.0e-213 745.7 949 46.2
Cc08_g12070 Coffea canephora HOM05D004501 ORTHO05D004944 8.8e-213 744.6 715 54.3
MELO3C005513.2 Cucumis melo HOM05D004501 ORTHO05D004944 8.8e-213 744.6 797 51.3
Gohir.D12G217800 Gossypium hirsutum HOM05D004501 ORTHO05D004944 2.0e-212 743.4 993 46.0
Lalb_Chr16g0379471 Lupinus albus HOM05D004501 ORTHO05D004944 2.0e-212 743.4 980 44.7
Duzib205G0832 Durio zibethinus HOM05D004501 ORTHO05D004944 7.5e-212 741.5 1002 45.4
Gohir.A12G215200 Gossypium hirsutum HOM05D004501 ORTHO05D004944 9.8e-212 741.1 993 45.8
CANSAT21G1630 Cannabis sativa HOM05D004501 ORTHO05D004944 3.7e-211 739.2 988 47.2
Dinv21665 Davidia involucrata HOM05D004501 ORTHO05D004944 4.9e-211 738.8 593 62.4
Medtr5g012940 Medicago truncatula HOM05D004501 ORTHO05D004944 4.9e-211 738.8 987 44.9
ClCG01G004260 Citrullus lanatus HOM05D004501 ORTHO05D004944 6.3e-211 738.4 968 45.4
Sed0003847 Sechium edule HOM05D004501 ORTHO05D004944 1.1e-210 737.6 977 45.9
Lj2g0006235 Lotus japonicus HOM05D004501 ORTHO05D004944 4.1e-210 735.7 968 45.2
Glyma.01G207400 Glycine max HOM05D004501 ORTHO05D004944 7.0e-210 734.9 955 45.1
Gohir.D03G165700 Gossypium hirsutum HOM05D004501 ORTHO05D004944 6.6e-208 728.4 976 45.3
Gorai.003G175400 Gossypium raimondii HOM05D004501 ORTHO05D004944 8.6e-208 728.0 973 45.8
Rhsim07G0115200 Rhododendron simsii HOM05D004501 ORTHO05D004944 1.5e-207 727.2 989 44.6
Psat2g176440 Pisum sativum HOM05D004501 ORTHO05D004944 4.3e-207 725.7 962 44.3
ECA240G3755 Erigeron canadensis HOM05D004501 ORTHO05D004944 1.2e-206 724.2 913 47.2
Lalb_Chr09g0324311 Lupinus albus HOM05D004501 ORTHO05D004944 1.2e-206 724.2 844 48.7
Glyma.11G035800 Glycine max HOM05D004501 ORTHO05D004944 2.8e-206 723.0 988 44.4
HanXRQChr03g0088961 Helianthus annuus HOM05D004501 ORTHO05D004944 4.7e-206 722.2 958 45.7
Prupe.5G064600 Prunus persica HOM05D004501 ORTHO05D004944 4.7e-206 722.2 899 47.3
Duzib068G0690 Durio zibethinus HOM05D004501 ORTHO05D004944 6.1e-206 721.8 987 45.9
HanXRQChr13g0417701 Helianthus annuus HOM05D004501 ORTHO05D004944 1.0e-205 721.1 909 47.0
VMungo1215G1578 Vigna mungo HOM05D004501 ORTHO05D004944 3.0e-205 719.5 954 44.5
Phvul.002G056400 Phaseolus vulgaris HOM05D004501 ORTHO05D004944 1.5e-204 717.2 987 42.8
Gohir.A03G006500 Gossypium hirsutum HOM05D004501 ORTHO05D004944 2.6e-204 716.5 977 45.2
FAN18G4013 Fragaria x ananassa HOM05D004501 ORTHO05D004944 4.4e-204 715.7 1034 43.9
Oeu027013.1 Olea europaea HOM05D004501 ORTHO05D004944 5.7e-204 715.3 758 51.6
PSO675G3024 Papaver somniferum HOM05D004501 ORTHO05D004944 2.9e-203 713.0 714 52.9
EL10Ac5g12334 Beta vulgaris HOM05D004501 ORTHO05D004944 6.4e-203 711.8 981 43.6
Lsat_1_v5_gn_6_93441 Lactuca sativa HOM05D004501 ORTHO05D004944 7.0e-202 708.4 915 47.5
Hund14524 Selenicereus undatus HOM05D004501 ORTHO05D004944 7.0e-202 708.4 800 49.0
MSTRG.12127 Avicennia marina HOM05D004501 ORTHO05D004944 2.0e-201 706.8 711 53.6
Nitab4.5_0010602g0010 Nicotiana tabacum HOM05D004501 ORTHO05D004944 2.0e-201 706.8 932 45.8
SalBow6G6502 Salvia bowleyana HOM05D004501 ORTHO05D004944 7.8e-201 704.9 700 54.1
PSO732G0005 Papaver somniferum HOM05D004501 ORTHO05D004944 1.7e-200 703.7 751 51.4
arahy.Tifrunner.gnm1.ann1.0753T9 Arachis hypogaea HOM05D004501 ORTHO05D004944 1.1e-199 701.0 986 42.5
arahy.Tifrunner.gnm1.ann1.F6SWGC Arachis hypogaea HOM05D004501 ORTHO05D004944 1.1e-199 701.0 986 42.5
AUR62007118 Chenopodium quinoa HOM05D004501 ORTHO05D004944 4.3e-199 699.1 872 45.4
Aqoxy7G03746 Aquilegia oxysepala HOM05D004501 ORTHO05D004944 1.4e-197 694.1 961 44.8
Migut.A01144 Erythranthe guttata HOM05D004501 ORTHO05D004944 3.4e-196 689.5 689 53.7
Ah.12g054390 Amaranthus hybridus HOM05D004501 ORTHO05D004944 5.8e-196 688.7 828 47.1
CiPaw.12G049700 Carya illinoinensis HOM05D004501 ORTHO05D004944 6.6e-192 675.2 818 48.0
AUR62019990 Chenopodium quinoa HOM05D004501 ORTHO05D004944 2.5e-191 673.3 765 48.8
GSVIVG01005813001 Vitis vinifera HOM05D004501 ORTHO05D004944 3.3e-191 672.9 694 52.3
SGA_v2.0_scaffold104G30193 Striga asiatica HOM05D004501 ORTHO05D004944 1.6e-190 670.6 729 50.3
ATR1145G029 Amborella trichopoda HOM05D004501 ORTHO05D004944 2.8e-190 669.8 705 50.5
TPR.G18132 Trifolium pratense HOM05D004501 ORTHO05D004944 8.9e-189 664.8 959 42.4
Actinidia02160 Actinidia chinensis HOM05D004501 ORTHO05D004944 4.1e-186 656.0 935 42.7
Peaxi162Scf00346g00112 Petunia axillaris HOM05D004501 ORTHO05D004944 2.4e-178 630.2 739 48.6
Hma1.2p1_1196F.1_g265990 Hydrangea macrophylla HOM05D004501 ORTHO05D004944 5.4e-178 629.0 802 46.6
Nitab4.5_0001590g0040 Nicotiana tabacum HOM05D004501 ORTHO05D004944 1.9e-175 620.5 743 47.5
CDE11G0214 Ceratophyllum demersum HOM05D004501 ORTHO05D004944 2.0e-172 610.5 690 48.3
Rhsim13G0032200 Rhododendron simsii HOM05D004501 ORTHO05D004944 1.7e-171 607.4 609 54.2
SEGI_38311 Sequoiadendron giganteum HOM05D004501 ORTHO05D004944 3.4e-164 583.2 728 44.8
Zm00001eb056470 Zea mays HOM05D004501 ORTHO05D004944 1.6e-161 574.3 731 44.9
Os03g0737200 Oryza sativa ssp. japonica HOM05D004501 ORTHO05D004944 2.7e-161 573.5 695 46.2
CDE02G3094 Ceratophyllum demersum HOM05D004501 ORTHO05D004944 5.8e-156 555.8 948 39.6
CSS0040587 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 3.1e-149 533.5 591 49.6
Mapoly0088s0017 Marchantia polymorpha HOM05D004501 ORTHO05D004944 1.5e-143 514.6 712 41.4
HPP92_002600 Vanilla planifolia HOM05D004501 ORTHO05D004944 1.3e-142 511.5 701 41.9
Dinv39174 Davidia involucrata HOM05D004501 ORTHO05D004944 3.1e-141 506.9 434 59.2
TAR374G0010 Trochodendron aralioides HOM05D004501 ORTHO05D004944 1.7e-139 501.1 430 59.8
SMO356G0217 Selaginella moellendorffii HOM05D004501 ORTHO05D004944 7.2e-138 495.7 662 42.1
Zm00001eb215300 Zea mays HOM05D004501 ORTHO05D004944 7.2e-138 495.7 638 43.7
C04p07690 Brassica napus HOM05D004501 ORTHO05D004944 8.2e-134 482.3 413 63.0
Pp3c24_4970 Physcomitrium patens HOM05D004501 ORTHO05D004944 7.9e-129 465.7 706 40.5
Pp3c10_5410 Physcomitrium patens HOM05D004501 ORTHO05D004944 1.4e-128 464.9 685 41.6
CSS0032615 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 9.7e-127 458.8 667 43.6
DCAR_020178 Daucus carota HOM05D004501 ORTHO05D004944 1.7e-123 448.0 740 39.2
Actinidia14399 Actinidia chinensis HOM05D004501 ORTHO05D004944 1.8e-101 374.8 733 36.0
BolC4t22385H Brassica oleracea HOM05D004501 ORTHO05D004944 3.3e-98 364.0 283 70.0
Cpa.g.sc776.4 Carica papaya HOM05D004501 ORTHO05D004944 2.1e-97 361.3 286 63.6
unitig_0.g1052 Utricularia gibba HOM05D004501 ORTHO05D004944 1.7e-94 351.7 723 34.2
AagrBONN_evm.TU.Sc2ySwM_368.3343 Anthoceros agrestis HOM05D004501 ORTHO05D004944 4.9e-94 350.1 531 39.9
CBR_g20363 Chara braunii HOM05D004501 ORTHO05D004944 5.4e-93 346.7 804 31.7
MD06G1054200 Malus domestica HOM05D004501 ORTHO05D004944 2.6e-79 301.2 523 40.3
BcaC02g12114 Brassica carinata HOM05D004501 ORTHO05D023925 3.2e-77 294.3 310 58.7
BolC4t22386H Brassica oleracea HOM05D004501 ORTHO05D004944 1.2e-73 282.3 257 64.2
MD06G1054400 Malus domestica HOM05D004501 ORTHO05D004944 1.7e-67 261.9 266 53.4
HanXRQChr15g0495741 Helianthus annuus HOM05D004501 ORTHO05D004944 4.7e-65 253.8 243 55.6
TAR374G0951 Trochodendron aralioides HOM05D004501 ORTHO05D004944 1.3e-62 245.7 570 34.6
CSS0028018 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 9.3e-53 213.0 193 57.0
SHI29866 Sapria himalayana HOM05D004501 ORTHO05D004944 1.6e-49 202.2 234 48.3
DCAR_020177 Daucus carota HOM05D004501 ORTHO05D004944 2.9e-46 191.4 216 51.4
CSS0011270 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 1.6e-41 175.6 175 54.9
CAN.G201.38 Capsicum annuum HOM05D004501 ORTHO05D004944 9.9e-39 166.4 312 37.5
FAN04G2417 Fragaria x ananassa HOM05D004501 ORTHO05D004944 1.7e-30 139.0 157 51.0
Zm00001eb142020 Zea mays HOM05D004501 ORTHO05D004944 6.7e-27 127.1 169 42.6
CSS0007149 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 8.7e-27 126.7 132 51.5
Cpa.g.sc776.5 Carica papaya HOM05D004501 ORTHO05D004944 7.4e-26 123.6 151 46.4
PRCOL_00000429 Prasinoderma coloniale HOM05D004501 ORTHO05D004944 6.3e-25 120.6 686 22.9
CAN.G26.29 Capsicum annuum HOM05D004501 ORTHO05D004944 3.4e-23 114.8 191 39.3
C04p07680 Brassica napus HOM05D004501 ORTHO05D023925 7.9e-20 103.6 74 74.3
Zm00001eb047720 Zea mays HOM05D004501 ORTHO05D004944 1.3e-17 96.3 114 44.7
BraA05t19626Z Brassica rapa HOM05D004501 ORTHO05D023925 2.7e-12 78.6 94 52.1
A05p06580 Brassica napus HOM05D004501 ORTHO05D023925 3.6e-12 78.2 94 52.1
BcaB02g09086 Brassica carinata HOM05D004501 ORTHO05D023925 5.1e-11 74.3 48 72.9
Sed0019349 Sechium edule HOM05D004501 ORTHO05D004944 6.7e-11 73.9 73 49.3
GSVIVG01006616001 Vitis vinifera HOM05D004501 ORTHO05D004944 1.1e-10 73.2 78 50.0
CSS0048159 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 4.4e-10 71.2 42 81.0
Cpa.g.sc776.3 Carica papaya HOM05D004501 ORTHO05D004944 6.3e-09 67.4 298 28.2


User provided reference genes

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