Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g05302 Brassica carinata HOM05D002172 ORTHO05D002167 8.5e-55 216.9 117 100.0
C03p28180 Brassica napus HOM05D002172 ORTHO05D002167 3.9e-15 85.1 85 62.4
A03p23630 Brassica napus HOM05D002172 ORTHO05D002167 1.1e-14 83.6 44 97.7
BraA03t11579Z Brassica rapa HOM05D002172 ORTHO05D002167 1.1e-14 83.6 44 97.7
Thhalv10006789m.g Eutrema salsugineum HOM05D002899 ORTHO05D003850 1.1e-14 83.6 68 67.6
Manes.13G139500 Manihot esculenta HOM05D002172 ORTHO05D002167 1.5e-14 83.2 48 89.6
C08p33640 Brassica napus HOM05D002172 ORTHO05D002167 1.9e-14 82.8 48 87.5
BolC8t50961H Brassica oleracea HOM05D002172 ORTHO05D002167 1.9e-14 82.8 48 87.5
CAN.G318.5 Capsicum annuum HOM05D002172 ORTHO05D002167 2.5e-14 82.4 53 77.4
Ca_18901_v3 Cicer arietinum L. HOM05D002172 ORTHO05D002167 2.5e-14 82.4 44 95.5
Peaxi162Scf00384g00069 Petunia axillaris HOM05D002172 ORTHO05D002167 2.5e-14 82.4 53 77.4
Psat5g275000 Pisum sativum HOM05D002172 ORTHO05D002167 2.5e-14 82.4 44 95.5
BcaC07g41444 Brassica carinata HOM05D002899 ORTHO05D003850 3.3e-14 82.0 68 66.2
A09p60630 Brassica napus HOM05D002899 ORTHO05D003850 3.3e-14 82.0 68 66.2
C04p34290 Brassica napus HOM05D002172 ORTHO05D002167 3.3e-14 82.0 47 87.2
C08p44090 Brassica napus HOM05D002899 ORTHO05D003850 3.3e-14 82.0 68 66.2
BolC4t24989H Brassica oleracea HOM05D002172 ORTHO05D002167 3.3e-14 82.0 47 87.2
BolC8t51957H Brassica oleracea HOM05D002899 ORTHO05D003850 3.3e-14 82.0 68 66.2
BraA09t41433Z Brassica rapa HOM05D002899 ORTHO05D003850 3.3e-14 82.0 68 66.2
Solyc12g010800.2 Solanum lycopersicum HOM05D002172 ORTHO05D002167 3.3e-14 82.0 92 50.0
AT1G17070 Arabidopsis thaliana HOM05D002899 ORTHO05D003850 4.3e-14 81.6 67 65.7
BcaC02g12484 Brassica carinata HOM05D002172 ORTHO05D002167 4.3e-14 81.6 68 67.6
A05p02920 Brassica napus HOM05D002172 ORTHO05D002167 4.3e-14 81.6 68 67.6
C04p03550 Brassica napus HOM05D002172 ORTHO05D002167 4.3e-14 81.6 68 67.6
Lalb_Chr03g0030941 Lupinus albus HOM05D002172 ORTHO05D002167 4.3e-14 81.6 53 77.4
Sopen12g006170 Solanum pennellii HOM05D002172 ORTHO05D002167 4.3e-14 81.6 92 50.0
TWI14G1374 Tripterygium wilfordii HOM05D002172 ORTHO05D002167 4.3e-14 81.6 65 72.3
Ah.04g164430 Amaranthus hybridus HOM05D002172 ORTHO05D007185 5.6e-14 81.3 59 74.6
BcaC02g09989 Brassica carinata HOM05D002172 ORTHO05D002167 5.6e-14 81.3 47 87.2
BcaC07g40326 Brassica carinata HOM05D002172 ORTHO05D002167 5.6e-14 81.3 48 85.4
Carub.0001s1679 Capsella rubella HOM05D002899 ORTHO05D003850 5.6e-14 81.3 68 63.2
Dinv14958 Davidia involucrata HOM05D002172 ORTHO05D002167 5.6e-14 81.3 48 85.4
Lj8A152T85 Lonicera japonica HOM05D002172 ORTHO05D002167 5.6e-14 81.3 46 89.1
TWI23G0692 Tripterygium wilfordii HOM05D002172 ORTHO05D002167 5.6e-14 81.3 51 82.4
Nn1g04300 Nelumbo nucifera HOM05D002172 ORTHO05D002167 7.3e-14 80.9 46 89.1
PGR142G3291 Punica granatum HOM05D002172 ORTHO05D002167 1.2e-13 80.1 51 80.4
CSS0009595 Camellia sinensis var. sinensis HOM05D002172 ORTHO05D002167 1.6e-13 79.7 72 63.9
Sabra19G0105300 Salix brachista HOM05D002172 ORTHO05D002167 1.6e-13 79.7 46 87.0
CDE02G3937 Ceratophyllum demersum HOM05D002172 ORTHO05D002167 2.1e-13 79.3 48 83.3
Ca_04024_v3 Cicer arietinum L. HOM05D002172 ORTHO05D002167 2.1e-13 79.3 44 88.6
Rhsim06G0204100 Rhododendron simsii HOM05D002172 ORTHO05D002167 2.1e-13 79.3 46 87.0
AUR62019518 Chenopodium quinoa HOM05D002172 ORTHO05D002167 2.8e-13 79.0 43 90.7
ECA240G3701 Erigeron canadensis HOM05D002172 ORTHO05D002167 2.8e-13 79.0 48 81.2
Lj3g0018486 Lotus japonicus HOM05D002172 ORTHO05D002167 2.8e-13 79.0 51 78.4
unitig_37.g12563 Utricularia gibba HOM05D002172 ORTHO05D002167 2.8e-13 79.0 72 62.5
AUR62036121 Chenopodium quinoa HOM05D002172 ORTHO05D002167 3.6e-13 78.6 42 92.9
HanXRQChr03g0071001 Helianthus annuus HOM05D002172 ORTHO05D002167 3.6e-13 78.6 48 81.2
HanXRQChr13g0391241 Helianthus annuus HOM05D002172 ORTHO05D002167 3.6e-13 78.6 51 78.4
Sp1g15190 Schrenkiella parvula HOM05D002899 ORTHO05D003850 3.6e-13 78.6 67 64.2
PGSC0003DMG401007810 Solanum tuberosum HOM05D002172 ORTHO05D002167 3.6e-13 78.6 81 54.3
AL1G29240 Arabidopsis lyrata HOM05D002899 ORTHO05D003850 4.7e-13 78.2 68 60.3
AL4G40710 Arabidopsis lyrata HOM05D002899 ORTHO05D003850 6.2e-13 77.8 73 63.0
TAR624G0475 Trochodendron aralioides HOM05D002172 ORTHO05D002167 6.2e-13 77.8 53 75.5
TAR624G0577 Trochodendron aralioides HOM05D002172 ORTHO05D002167 6.2e-13 77.8 53 75.5
EL10Ac9g20854 Beta vulgaris HOM05D002172 ORTHO05D002167 8.1e-13 77.4 51 76.5
AUR62024071 Chenopodium quinoa HOM05D002172 ORTHO05D002167 8.1e-13 77.4 51 76.5
AUR62038993 Chenopodium quinoa HOM05D002172 ORTHO05D002167 8.1e-13 77.4 51 76.5
Dinv19980 Davidia involucrata HOM05D002172 ORTHO05D002167 8.1e-13 77.4 51 76.5
Duzib147G1659 Durio zibethinus HOM05D002172 ORTHO05D002167 1.1e-12 77.0 47 85.1
SHI27683 Sapria himalayana HOM05D002172 ORTHO05D002167 1.1e-12 77.0 44 86.4
CDE03G0342 Ceratophyllum demersum HOM05D002172 ORTHO05D002167 2.3e-12 75.9 85 56.5
CARHR017600 Cardamine hirsuta HOM05D002899 ORTHO05D003850 3.1e-12 75.5 67 61.2
Ah.01g003880 Amaranthus hybridus HOM05D002172 ORTHO05D002167 5.2e-12 74.7 51 74.5
vmacro11903 Vaccinium macrocarpon HOM05D002172 ORTHO05D002167 8.9e-12 73.9 48 77.1
Manes.03G103800 Manihot esculenta HOM05D002172 ORTHO05D002167 1.5e-11 73.2 69 63.8
Sc12g0003320 Simmondsia chinensis HOM05D002172 ORTHO05D002167 1.5e-11 73.2 51 68.6
THA.LOC104823791 Tarenaya hassleriana HOM05D002899 ORTHO05D003850 2.0e-11 72.8 68 58.8
AT2G42330 Arabidopsis thaliana HOM05D002899 ORTHO05D003850 3.4e-11 72.0 73 58.9
HPP92_005197 Vanilla planifolia HOM05D002172 ORTHO05D002167 3.4e-11 72.0 51 74.5
Zm00001eb238570 Zea mays HOM05D002172 ORTHO05D002167 3.4e-11 72.0 51 76.5
Aa31LG11G5630 Aethionema arabicum HOM05D002899 ORTHO05D003850 4.4e-11 71.6 67 59.7
BcaC07g41394 Brassica carinata HOM05D002899 ORTHO05D003850 7.5e-11 70.9 63 60.3
HPP92_020291 Vanilla planifolia HOM05D002172 ORTHO05D002167 7.5e-11 70.9 87 50.6
Os01g0756200 Oryza sativa ssp. japonica HOM05D002172 ORTHO05D002167 9.9e-11 70.5 48 77.1
Os01g0211800 Oryza sativa ssp. japonica HOM05D002172 ORTHO05D002167 1.3e-10 70.1 44 81.8
Zm00001eb370720 Zea mays HOM05D002172 ORTHO05D002167 1.3e-10 70.1 70 62.9
Zm00001eb152810 Zea mays HOM05D002172 ORTHO05D002167 2.2e-10 69.3 51 72.5
MD17G1233900 Malus domestica HOM05D002172 ORTHO05D002167 2.9e-10 68.9 51 70.6
Mapoly0019s0040 Marchantia polymorpha HOM05D001917 ORTHO05D002167 2.9e-10 68.9 51 64.7
HPP92_024329 Vanilla planifolia HOM05D002172 ORTHO05D002167 3.7e-10 68.6 52 69.2
Zm00001eb204490 Zea mays HOM05D002172 ORTHO05D002167 3.7e-10 68.6 51 70.6
Actinidia11125 Actinidia chinensis HOM05D002172 ORTHO05D002167 4.9e-10 68.2 38 86.8
THA.LOC104805726 Tarenaya hassleriana HOM05D002899 ORTHO05D003850 8.3e-10 67.4 67 53.7
CARHR137380 Cardamine hirsuta HOM05D002899 ORTHO05D003850 1.1e-09 67.0 74 54.1
SMO116G0479 Selaginella moellendorffii HOM05D002172 ORTHO05D002167 1.9e-09 66.2 42 71.4
Hma1.2p1_0416F.1_g148590 Hydrangea macrophylla HOM05D002172 ORTHO05D002167 2.4e-09 65.9 51 66.7
BcaC07g40182 Brassica carinata HOM05D002172 ORTHO05D002167 1.6e-08 63.2 72 56.9
Lsat_1_v5_gn_9_99081 Lactuca sativa HOM05D002172 ORTHO05D002167 6.0e-08 61.2 51 62.7
Actinidia10984 Actinidia chinensis HOM05D002172 ORTHO05D002167 1.3e-07 60.1 48 64.6
SMO343G0127 Selaginella moellendorffii HOM05D002172 ORTHO05D002167 2.3e-07 59.3 38 73.7
Thhalv10016923m.g Eutrema salsugineum HOM05D002172 ORTHO05D002167 3.0e-07 58.9 51 62.7
SMO367G0542 Selaginella moellendorffii HOM05D002172 ORTHO05D002167 3.0e-07 58.9 85 45.9
BcaC01g05287 Brassica carinata HOM05D002172 ORTHO05D002167 3.9e-07 58.5 94 43.6
BcaC01g05291 Brassica carinata HOM05D002172 ORTHO05D002167 3.9e-07 58.5 94 43.6
BolC3t15188H Brassica oleracea HOM05D002172 ORTHO05D002167 3.9e-07 58.5 94 43.6
Rhsim06G0135000 Rhododendron simsii HOM05D002172 ORTHO05D002167 1.1e-06 57.0 48 62.5
vmacro12360 Vaccinium macrocarpon HOM05D002172 ORTHO05D002167 1.1e-06 57.0 48 62.5
AL5G39810 Arabidopsis lyrata HOM05D002172 ORTHO05D002167 1.9e-06 56.2 30 90.0
AT3G58120 Arabidopsis thaliana HOM05D002172 ORTHO05D002167 1.9e-06 56.2 30 90.0
arahy.Tifrunner.gnm1.ann1.V67U6Z Arachis hypogaea HOM05D002172 ORTHO05D002167 1.9e-06 56.2 30 90.0
BcaB02g07549 Brassica carinata HOM05D002172 ORTHO05D002167 1.9e-06 56.2 30 90.0
BcaC07g40184 Brassica carinata HOM05D002172 ORTHO05D002167 1.9e-06 56.2 30 90.0
BcaC08g44898 Brassica carinata HOM05D002172 ORTHO05D002167 1.9e-06 56.2 30 90.0
A07p23890 Brassica napus HOM05D002172 ORTHO05D002167 1.9e-06 56.2 30 90.0
A09p50900 Brassica napus HOM05D002172 ORTHO05D002167 1.9e-06 56.2 30 90.0
C06p25130 Brassica napus HOM05D002172 ORTHO05D002167 1.9e-06 56.2 30 90.0
BolC6t37671H Brassica oleracea HOM05D002172 ORTHO05D002167 1.9e-06 56.2 30 90.0
BraA07t30042Z Brassica rapa HOM05D002172 ORTHO05D002167 1.9e-06 56.2 30 90.0
BraA09t40536Z Brassica rapa HOM05D002172 ORTHO05D002167 1.9e-06 56.2 30 90.0
Carub.0005s2497 Capsella rubella HOM05D002172 ORTHO05D002167 1.9e-06 56.2 30 90.0
CARHR168470 Cardamine hirsuta HOM05D002172 ORTHO05D002167 1.9e-06 56.2 30 90.0
Thhalv10006090m.g Eutrema salsugineum HOM05D002172 ORTHO05D002167 1.9e-06 56.2 30 90.0
FAN14G4401 Fragaria x ananassa HOM05D002172 ORTHO05D002167 1.9e-06 56.2 31 90.3
Sp5g04600 Schrenkiella parvula HOM05D002172 ORTHO05D002167 1.9e-06 56.2 30 90.0
Cpa.g.sc43.153 Carica papaya HOM05D002899 ORTHO05D003850 2.5e-06 55.8 67 47.8
Haze_13308 Corylus avellana HOM05D002172 ORTHO05D002167 2.5e-06 55.8 29 93.1
Pp3c2_26970 Physcomitrium patens HOM05D002172 ORTHO05D002167 2.5e-06 55.8 68 42.6
BcaB01g03446 Brassica carinata HOM05D002172 ORTHO05D002167 4.3e-06 55.1 94 41.5
Pp3c24_10470 Physcomitrium patens HOM05D002172 ORTHO05D002167 4.3e-06 55.1 125 33.6
COL.COLO4_33467 Corchorus olitorius HOM05D002899 ORTHO05D003850 5.6e-06 54.7 67 47.8
Pp3c8_11470 Physcomitrium patens HOM05D002172 ORTHO05D002167 5.6e-06 54.7 112 33.0
arahy.Tifrunner.gnm1.ann1.0BLG9X Arachis hypogaea HOM05D002172 ORTHO05D002167 7.3e-06 54.3 29 89.7


User provided reference genes

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