Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g05216 Brassica carinata HOM05D008029 ORTHO05D003588 1.1e-135 486.5 230 100.0
C03p29130 Brassica napus HOM05D008029 ORTHO05D003588 1.4e-133 479.6 230 98.7
BolC3t15265H Brassica oleracea HOM05D008029 ORTHO05D003588 1.4e-133 479.6 230 98.7
BraA03t11654Z Brassica rapa HOM05D008029 ORTHO05D003588 2.9e-123 445.3 230 93.5
A03p24450 Brassica napus HOM05D008029 ORTHO05D003588 1.9e-122 442.6 230 93.0
BcaB06g29345 Brassica carinata HOM05D008029 ORTHO05D003588 7.0e-77 291.2 231 66.2
BraA04t18762Z Brassica rapa HOM05D008029 ORTHO05D003588 8.5e-75 284.3 230 64.3
BcaB01g03364 Brassica carinata HOM05D008029 ORTHO05D003588 1.3e-70 270.4 164 79.3
A04p33030 Brassica napus HOM05D008029 ORTHO05D003588 1.6e-65 253.4 205 64.4
Thhalv10001798m.g Eutrema salsugineum HOM05D008029 ORTHO05D003588 2.9e-46 189.5 236 50.8
AT2G43730 Arabidopsis thaliana HOM05D008029 ORTHO05D003588 1.7e-38 163.7 234 44.9
AL4G42580 Arabidopsis lyrata HOM05D008029 ORTHO05D003588 9.5e-34 147.9 226 44.2
AL4G42590 Arabidopsis lyrata HOM05D008029 ORTHO05D003588 2.1e-28 130.2 199 45.7
AT2G43740 Arabidopsis thaliana HOM05D008029 ORTHO05D003588 2.1e-28 130.2 222 39.2
AL4G42600 Arabidopsis lyrata HOM05D008029 ORTHO05D003588 1.3e-25 120.9 256 35.5
Carub.0004s2627 Capsella rubella HOM05D008029 ORTHO05D003588 2.1e-25 120.2 168 42.9
CARHR050270 Cardamine hirsuta HOM05D008029 ORTHO05D003588 8.4e-22 108.2 160 41.2
AL4G42570 Arabidopsis lyrata HOM05D008029 ORTHO05D003588 1.1e-21 107.8 162 42.0
BraA04t18763Z Brassica rapa HOM05D008029 ORTHO05D003588 3.5e-20 102.8 154 40.3
A04p33040 Brassica napus HOM05D008029 ORTHO05D003588 6.0e-20 102.1 154 39.6
Thhalv10010901m.g Eutrema salsugineum HOM05D008029 ORTHO05D003588 1.3e-19 100.9 184 38.0
BolC4t28575H Brassica oleracea HOM05D008029 ORTHO05D003588 2.3e-19 100.1 154 39.6
C04p70740 Brassica napus HOM05D008029 ORTHO05D003588 1.5e-18 97.4 155 38.1
BcaB01g03363 Brassica carinata HOM05D008029 ORTHO05D003588 1.9e-18 97.1 154 42.2
BcaC02g07152 Brassica carinata HOM05D008029 ORTHO05D003588 4.3e-18 95.9 155 37.4
BolC4t28574H Brassica oleracea HOM05D008029 ORTHO05D003588 4.3e-18 95.9 155 37.4
Sp7g10340 Schrenkiella parvula HOM05D008029 ORTHO05D003588 2.1e-17 93.6 153 40.5
BraA05t19383Z Brassica rapa HOM05D008029 ORTHO05D003588 3.6e-17 92.8 146 42.5
A05p03950 Brassica napus HOM05D008029 ORTHO05D003588 4.8e-17 92.4 146 41.8
Thhalv10001732m.g Eutrema salsugineum HOM05D008029 ORTHO05D003588 8.1e-17 91.7 138 44.9
A03p46150 Brassica napus HOM05D008029 ORTHO05D003588 1.8e-16 90.5 146 41.8
BraA05t19382Z Brassica rapa HOM05D008029 ORTHO05D003588 9.0e-16 88.2 146 41.8
AL4G42610 Arabidopsis lyrata HOM05D008029 ORTHO05D003588 1.5e-15 87.4 141 42.6
A05p03940 Brassica napus HOM05D008029 ORTHO05D003588 2.6e-15 86.7 130 43.1
BolC4t22100H Brassica oleracea HOM05D008029 ORTHO05D003588 2.6e-15 86.7 145 41.4
BraA03t11653Z Brassica rapa HOM05D008029 ORTHO05D003588 3.4e-15 86.3 135 43.0
BolC4t28573H Brassica oleracea HOM05D008029 ORTHO05D016094 5.8e-15 85.5 150 38.0
A06p31150 Brassica napus HOM05D008029 ORTHO05D003588 1.3e-14 84.3 166 37.3
C04p70730 Brassica napus HOM05D008029 ORTHO05D016094 1.7e-14 84.0 150 37.3
A03p24440 Brassica napus HOM05D008029 ORTHO05D003588 2.9e-14 83.2 135 42.2
PGSC0003DMG400006100 Solanum tuberosum HOM05D000862 ORTHO05D003588 4.9e-14 82.4 153 32.7
Solyc09g083030.1 Solanum lycopersicum HOM05D000862 ORTHO05D003588 2.1e-12 77.0 157 30.6
Sopen09g031900 Solanum pennellii HOM05D000862 ORTHO05D003588 2.1e-12 77.0 157 30.6
BcaC02g07151 Brassica carinata HOM05D000384 ORTHO05D000468 3.5e-12 76.3 120 40.0
Aa31LG1G25450 Aethionema arabicum HOM05D008029 ORTHO05D003588 6.0e-12 75.5 147 36.7
BcaC02g07154 Brassica carinata HOM05D008029 ORTHO05D016094 6.0e-12 75.5 143 35.0
DCAR_011947 Daucus carota HOM05D000862 ORTHO05D003588 6.0e-12 75.5 147 31.3
Sopen09g031890 Solanum pennellii HOM05D000862 ORTHO05D003588 1.0e-11 74.7 153 30.7
Aqoxy1G02186 Aquilegia oxysepala HOM05D000862 ORTHO05D003588 2.3e-11 73.6 156 30.8
Dinv15179 Davidia involucrata HOM05D000862 ORTHO05D003588 2.3e-11 73.6 145 36.6
C04p70750 Brassica napus HOM05D000384 ORTHO05D000468 3.9e-11 72.8 120 39.2
Solyc09g083020.1 Solanum lycopersicum HOM05D000862 ORTHO05D003588 3.9e-11 72.8 153 29.4
Migut.N00044 Erythranthe guttata HOM05D000862 ORTHO05D003588 5.1e-11 72.4 154 34.4
Thhalv10001737m.g Eutrema salsugineum HOM05D008029 ORTHO05D003588 5.1e-11 72.4 95 43.2
AUR62016202 Chenopodium quinoa HOM05D008029 ORTHO05D003588 6.7e-11 72.0 151 29.8
MSTRG.21770 Avicennia marina HOM05D000862 ORTHO05D003588 1.5e-10 70.9 160 31.9
Sp4g25800 Schrenkiella parvula HOM05D008029 ORTHO05D016094 1.5e-10 70.9 152 34.2
Actinidia13361 Actinidia chinensis HOM05D000862 ORTHO05D003588 4.3e-10 69.3 154 29.9
Thhalv10008892m.g Eutrema salsugineum HOM05D000862 ORTHO05D003588 4.3e-10 69.3 158 36.1
BcaC01g05215 Brassica carinata HOM05D008029 ORTHO05D003588 5.6e-10 68.9 137 38.7
BcaC02g07153 Brassica carinata HOM05D008029 ORTHO05D016094 7.4e-10 68.6 148 33.1
Glyma.18G061800 Glycine max HOM05D000862 ORTHO05D000943 7.4e-10 68.6 157 35.0
CAN.G749.20 Capsicum annuum HOM05D000862 ORTHO05D003588 1.3e-09 67.8 158 31.6
Nn5g29733 Nelumbo nucifera HOM05D000862 ORTHO05D000943 1.3e-09 67.8 163 32.5
AL1G15670 Arabidopsis lyrata HOM05D000862 ORTHO05D003588 1.6e-09 67.4 158 35.4
A09p45570 Brassica napus HOM05D008029 ORTHO05D003588 1.6e-09 67.4 102 43.1
BraA09t40018Z Brassica rapa HOM05D008029 ORTHO05D003588 1.6e-09 67.4 102 43.1
CAN.G749.24 Capsicum annuum HOM05D000862 ORTHO05D003588 1.6e-09 67.4 156 31.4
EL10Ac3g05500 Beta vulgaris HOM05D008029 ORTHO05D003588 2.1e-09 67.0 184 33.2
Carub.0001s0511 Capsella rubella HOM05D000862 ORTHO05D003588 2.1e-09 67.0 158 34.8
Glyma.11G173800 Glycine max HOM05D000862 ORTHO05D000943 2.1e-09 67.0 157 34.4
Lsat_1_v5_gn_6_18420 Lactuca sativa HOM05D008029 ORTHO05D003588 2.1e-09 67.0 160 28.1
Sc13g0005910 Simmondsia chinensis HOM05D000862 ORTHO05D003588 2.1e-09 67.0 160 33.1
Ah.04g156870 Amaranthus hybridus HOM05D008029 ORTHO05D003588 2.8e-09 66.6 160 30.0
EL10Ac3g05502 Beta vulgaris HOM05D008029 ORTHO05D003588 2.8e-09 66.6 152 30.3
BolC3t15266H Brassica oleracea HOM05D008029 ORTHO05D003588 3.7e-09 66.2 190 33.2
Eucgr.F01690 Eucalyptus grandis HOM05D000862 ORTHO05D000943 4.8e-09 65.9 158 33.5
Sp1g04570 Schrenkiella parvula HOM05D000862 ORTHO05D003588 4.8e-09 65.9 160 35.0
CSS0039572 Camellia sinensis var. sinensis HOM05D000862 ORTHO05D003588 6.2e-09 65.5 163 32.5
CAN.G575.18 Capsicum annuum HOM05D000862 ORTHO05D003588 6.2e-09 65.5 156 34.0
Lsat_1_v5_gn_6_18400 Lactuca sativa HOM05D000862 ORTHO05D003588 6.2e-09 65.5 135 32.6
C03p29140 Brassica napus HOM05D008029 ORTHO05D003588 8.1e-09 65.1 190 33.7
HanXRQChr12g0379721 Helianthus annuus HOM05D000862 ORTHO05D003588 1.1e-08 64.7 145 30.3
ECA233G3755 Erigeron canadensis HOM05D000862 ORTHO05D003588 1.4e-08 64.3 140 32.9
CAN.G749.18 Capsicum annuum HOM05D000862 ORTHO05D003588 1.8e-08 63.9 156 32.7
CiPaw.07G156100 Carya illinoinensis HOM05D000862 ORTHO05D000943 1.8e-08 63.9 165 32.1
THA.LOC104815871 Tarenaya hassleriana HOM05D000862 ORTHO05D003588 1.8e-08 63.9 147 31.3
CSS0041630 Camellia sinensis var. sinensis HOM05D000862 ORTHO05D003588 2.4e-08 63.5 149 32.9
Nitab4.5_0001787g0050 Nicotiana tabacum HOM05D000862 ORTHO05D003588 2.4e-08 63.5 159 28.3
Peaxi162Scf00062g01918 Petunia axillaris HOM05D000862 ORTHO05D003588 2.4e-08 63.5 137 33.6
TWI56G0138 Tripterygium wilfordii HOM05D000862 ORTHO05D000943 2.4e-08 63.5 142 35.2
CAN.G749.17 Capsicum annuum HOM05D000002 ORTHO05D003588 4.0e-08 62.8 142 31.7
CARHR005260 Cardamine hirsuta HOM05D000862 ORTHO05D003588 4.0e-08 62.8 168 32.1
AT1G05760 Arabidopsis thaliana HOM05D000862 ORTHO05D003588 5.3e-08 62.4 158 33.5
Dinv39464 Davidia involucrata HOM05D000862 ORTHO05D000943 5.3e-08 62.4 144 34.7
Nitab4.5_0012347g0020 Nicotiana tabacum HOM05D000862 ORTHO05D003588 5.3e-08 62.4 161 30.4
Psat2g057640 Pisum sativum HOM05D000862 ORTHO05D000943 5.3e-08 62.4 144 34.0
PGSC0003DMG400006098 Solanum tuberosum HOM05D000862 ORTHO05D003588 5.3e-08 62.4 156 29.5
CAN.G575.17 Capsicum annuum HOM05D000966 ORTHO05D002384 6.9e-08 62.0 121 32.2
Potri.005G232400 Populus trichocarpa HOM05D000862 ORTHO05D000943 6.9e-08 62.0 145 34.5
Potri.010G144900 Populus trichocarpa HOM05D008029 ORTHO05D003588 6.9e-08 62.0 141 32.6
Ca_05614_v3 Cicer arietinum L. HOM05D000862 ORTHO05D000003 9.0e-08 61.6 144 33.3
Peaxi162Scf00441g00622 Petunia axillaris HOM05D000862 ORTHO05D003588 9.0e-08 61.6 144 31.9
VMungo0540G1698 Vigna mungo HOM05D000862 ORTHO05D000943 9.0e-08 61.6 144 34.0
Carub.0002s0547 Capsella rubella HOM05D000209 ORTHO05D000129 1.2e-07 61.2 134 29.9
MD15G1021200 Malus domestica HOM05D000862 ORTHO05D000943 1.2e-07 61.2 160 31.9
Manes.05G154000 Manihot esculenta HOM05D000862 ORTHO05D000943 1.2e-07 61.2 157 31.8
PGSC0003DMG400041018 Solanum tuberosum HOM05D000862 ORTHO05D003588 1.2e-07 61.2 160 32.5
A06p02130 Brassica napus HOM05D000956 ORTHO05D014114 1.5e-07 60.8 104 36.5
COL.COLO4_26231 Corchorus olitorius HOM05D000862 ORTHO05D000943 1.5e-07 60.8 147 33.3
Nitab4.5_0001787g0070 Nicotiana tabacum HOM05D000862 ORTHO05D003588 1.5e-07 60.8 157 30.6
BraA06t23424Z Brassica rapa HOM05D000956 ORTHO05D014114 2.0e-07 60.5 104 36.5
LjContig00155g0010021 Lotus japonicus HOM05D000862 ORTHO05D000943 2.0e-07 60.5 144 32.6
Medtr5g071200 Medicago truncatula HOM05D000862 ORTHO05D000943 2.0e-07 60.5 144 33.3
TPR.G34586 Trifolium pratense HOM05D000862 ORTHO05D000943 2.0e-07 60.5 144 33.3
Aa31sc217G20 Aethionema arabicum HOM05D000956 ORTHO05D001930 2.6e-07 60.1 155 29.7
Cpa.g.c31450.2 Carica papaya HOM05D000862 ORTHO05D000943 2.6e-07 60.1 143 31.5
Lsat_1_v5_gn_6_16781 Lactuca sativa HOM05D000862 ORTHO05D003588 2.6e-07 60.1 138 28.3
Phvul.006G068800 Phaseolus vulgaris HOM05D000862 ORTHO05D000943 2.6e-07 60.1 162 32.1
BcaC08g43358 Brassica carinata HOM05D000956 ORTHO05D014114 3.4e-07 59.7 104 36.5
C06p07220 Brassica napus HOM05D000956 ORTHO05D014114 3.4e-07 59.7 104 36.5
BolC6t35814H Brassica oleracea HOM05D000956 ORTHO05D014114 3.4e-07 59.7 104 36.5
Nitab4.5_0001568g0080 Nicotiana tabacum HOM05D000862 ORTHO05D003588 3.4e-07 59.7 147 32.0
Rhsim04G0236000 Rhododendron simsii HOM05D000862 ORTHO05D003588 3.4e-07 59.7 165 31.5
THA.LOC104806014 Tarenaya hassleriana HOM05D000956 ORTHO05D001930 3.4e-07 59.7 86 33.7
DCAR_024495 Daucus carota HOM05D000075 ORTHO05D003588 4.5e-07 59.3 164 27.4
Thhalv10009313m.g Eutrema salsugineum HOM05D008029 ORTHO05D003588 4.5e-07 59.3 153 32.0
Rhsim02G0004300 Rhododendron simsii HOM05D000862 ORTHO05D003588 5.8e-07 58.9 152 27.6
Aa31LG10G2770 Aethionema arabicum HOM05D000956 ORTHO05D001930 1.0e-06 58.2 155 32.3
Nitab4.5_0001124g0110 Nicotiana tabacum HOM05D000862 ORTHO05D003588 1.0e-06 58.2 137 33.6
Thhalv10023105m.g Eutrema salsugineum HOM05D008029 ORTHO05D003588 1.3e-06 57.8 58 51.7
Peaxi162Scf00285g00444 Petunia axillaris HOM05D000862 ORTHO05D003588 1.3e-06 57.8 126 32.5
THA.LOC104800919 Tarenaya hassleriana HOM05D000862 ORTHO05D003588 1.3e-06 57.8 169 30.2
TAR636G0912 Trochodendron aralioides HOM05D000862 ORTHO05D003588 1.3e-06 57.8 156 32.1
QL02p010285 Quercus lobata HOM05D000862 ORTHO05D000943 1.7e-06 57.4 165 30.9
Aa31LG7G4300 Aethionema arabicum HOM05D000862 ORTHO05D000943 2.2e-06 57.0 143 31.5
QL02p010300 Quercus lobata HOM05D000862 ORTHO05D000943 2.9e-06 56.6 166 31.9
Sp5g28000 Schrenkiella parvula HOM05D000862 ORTHO05D000943 2.9e-06 56.6 143 30.8
BcaB06g25745 Brassica carinata HOM05D000956 ORTHO05D001930 3.8e-06 56.2 100 40.0
BcaB06g25751 Brassica carinata HOM05D001329 ORTHO05D002618 3.8e-06 56.2 101 34.7
A05p33060 Brassica napus HOM05D000956 ORTHO05D001930 3.8e-06 56.2 100 40.0
CSS0029865 Camellia sinensis var. sinensis HOM05D000862 ORTHO05D003588 3.8e-06 56.2 175 29.1
CSS0034808 Camellia sinensis var. sinensis HOM05D000862 ORTHO05D003588 3.8e-06 56.2 175 29.1
AUR62039285 Chenopodium quinoa HOM05D008029 ORTHO05D003588 3.8e-06 56.2 144 30.6
MELO3C010973.2 Cucumis melo HOM05D000862 ORTHO05D000943 3.8e-06 56.2 157 30.6
Medtr3g464370 Medicago truncatula HOM05D000862 ORTHO05D000943 3.8e-06 56.2 144 31.9
Peaxi162Scf01044g00232 Petunia axillaris HOM05D000862 ORTHO05D003588 3.8e-06 56.2 137 32.1
arahy.Tifrunner.gnm1.ann1.R4H24K Arachis hypogaea HOM05D000862 ORTHO05D000003 4.9e-06 55.8 141 32.6
Eucgr.I02556 Eucalyptus grandis HOM05D000862 ORTHO05D000943 4.9e-06 55.8 105 41.0
PGR142G3142 Punica granatum HOM05D000862 ORTHO05D000943 4.9e-06 55.8 137 36.5
Hund17201 Selenicereus undatus HOM05D000862 ORTHO05D000943 4.9e-06 55.8 154 32.5
PGSC0003DMG400041736 Solanum tuberosum HOM05D000862 ORTHO05D003588 4.9e-06 55.8 138 31.2
EL10Ac1g00597 Beta vulgaris HOM05D000862 ORTHO05D000943 6.4e-06 55.5 146 30.1
CANSAT25G1772 Cannabis sativa HOM05D000862 ORTHO05D000943 6.4e-06 55.5 154 33.1
Eucgr.I02558 Eucalyptus grandis HOM05D000862 ORTHO05D000943 6.4e-06 55.5 144 35.4
Nitab4.5_0000798g0040 Nicotiana tabacum HOM05D000862 ORTHO05D003588 6.4e-06 55.5 103 31.1
SGA_v2.0_scaffold480G52303 Striga asiatica HOM05D000862 ORTHO05D003588 6.4e-06 55.5 108 35.2
Thhalv10007145m.g Eutrema salsugineum HOM05D000862 ORTHO05D000943 8.4e-06 55.1 143 35.0
Nn7g36896 Nelumbo nucifera HOM05D008029 ORTHO05D003588 8.4e-06 55.1 102 37.3
THA.LOC104800920 Tarenaya hassleriana HOM05D008029 ORTHO05D003588 8.4e-06 55.1 171 31.6


User provided reference genes

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