Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g05199 Brassica carinata HOM05D001878 ORTHO05D001737 1.3e-32 142.9 81 100.0
BcaC01g05200 Brassica carinata HOM05D001878 ORTHO05D001737 2.2e-32 142.1 81 98.8
BolC3t15314H Brassica oleracea HOM05D001878 ORTHO05D001737 1.1e-31 139.8 81 97.5
BcaC01g05201 Brassica carinata HOM05D001878 ORTHO05D001737 2.4e-31 138.7 81 96.3
C03p29660 Brassica napus HOM05D001878 ORTHO05D001737 5.3e-31 137.5 81 96.3
A03p24870 Brassica napus HOM05D001878 ORTHO05D001737 7.0e-31 137.1 81 95.1
BraA03t11694Z Brassica rapa HOM05D001878 ORTHO05D001737 7.0e-31 137.1 81 95.1
Thhalv10001488m.g Eutrema salsugineum HOM05D001878 ORTHO05D001737 3.3e-25 118.2 77 89.6
CARHR139940 Cardamine hirsuta HOM05D001878 ORTHO05D001737 1.4e-23 112.8 78 83.3
AL4G43780 Arabidopsis lyrata HOM05D001878 ORTHO05D001737 7.0e-23 110.5 79 81.0
Sp4g26780 Schrenkiella parvula HOM05D001878 ORTHO05D001737 7.0e-23 110.5 79 82.3
BolC4t22199H Brassica oleracea HOM05D001878 ORTHO05D001737 1.7e-21 105.9 76 81.6
BraA05t19461Z Brassica rapa HOM05D001878 ORTHO05D001737 1.7e-21 105.9 75 81.3
BcaC02g12281 Brassica carinata HOM05D001878 ORTHO05D001737 5.0e-21 104.4 73 82.2
A05p04860 Brassica napus HOM05D001878 ORTHO05D001737 5.0e-21 104.4 75 80.0
C04p05690 Brassica napus HOM05D001878 ORTHO05D001737 5.0e-21 104.4 73 82.2
BcaB02g08851 Brassica carinata HOM05D001878 ORTHO05D001737 6.5e-21 104.0 73 80.8
BcaC02g12279 Brassica carinata HOM05D001878 ORTHO05D001737 6.5e-21 104.0 73 80.8
Carub.0004s2728 Capsella rubella HOM05D001878 ORTHO05D001737 7.2e-20 100.5 67 83.6
Aa31LG1G26270 Aethionema arabicum HOM05D001878 ORTHO05D001737 2.1e-19 99.0 70 78.6
AT2G44730 Arabidopsis thaliana HOM05D001878 ORTHO05D001737 2.1e-19 99.0 77 75.3
MD02G1219900 Malus domestica HOM05D001878 ORTHO05D001737 1.3e-16 89.7 77 67.5
FvH4_7g09240 Fragaria vesca HOM05D001878 ORTHO05D001737 2.2e-16 89.0 77 66.2
FAN03G2199 Fragaria x ananassa HOM05D001878 ORTHO05D001737 2.2e-16 89.0 77 66.2
FAN06G0367 Fragaria x ananassa HOM05D001878 ORTHO05D001737 2.2e-16 89.0 77 66.2
FAN10G3061 Fragaria x ananassa HOM05D001878 ORTHO05D001737 4.8e-16 87.8 77 64.9
FAN10G3306 Fragaria x ananassa HOM05D001878 ORTHO05D001737 4.8e-16 87.8 77 64.9
Sed0011776 Sechium edule HOM05D001878 ORTHO05D001737 4.8e-16 87.8 81 63.0
Ca_21569_v3 Cicer arietinum L. HOM05D001878 ORTHO05D001737 6.3e-16 87.4 64 75.0
MELO3C006287.2 Cucumis melo HOM05D001878 ORTHO05D001737 1.4e-15 86.3 73 68.5
CsaV3_3G010680 Cucumis sativus L. HOM05D001878 ORTHO05D001737 1.4e-15 86.3 73 68.5
Prupe.2G121200 Prunus persica HOM05D001878 ORTHO05D001737 2.4e-15 85.5 77 64.9
FAN05G2379 Fragaria x ananassa HOM05D001878 ORTHO05D001737 5.4e-15 84.3 63 71.4
THA.LOC104802500 Tarenaya hassleriana HOM05D001878 ORTHO05D001737 5.4e-15 84.3 77 64.9
Lalb_Chr12g0210451 Lupinus albus HOM05D001878 ORTHO05D001737 7.0e-15 84.0 79 62.0
CAN.G756.42 Capsicum annuum HOM05D001878 ORTHO05D001737 9.1e-15 83.6 70 65.7
QL04p028592 Quercus lobata HOM05D001878 ORTHO05D001737 9.1e-15 83.6 77 63.6
QL04p028713 Quercus lobata HOM05D001878 ORTHO05D001737 9.1e-15 83.6 77 63.6
MD07G1097000 Malus domestica HOM05D001878 ORTHO05D001737 1.2e-14 83.2 77 63.6
MD07G1097300 Malus domestica HOM05D001878 ORTHO05D001737 1.2e-14 83.2 77 63.6
SHI13627 Sapria himalayana HOM05D001878 ORTHO05D001737 1.2e-14 83.2 77 58.4
Gohir.D08G160800 Gossypium hirsutum HOM05D001878 ORTHO05D001737 3.5e-14 81.6 70 64.3
Psat4g031080 Pisum sativum HOM05D001878 ORTHO05D001737 3.5e-14 81.6 64 67.2
Gohir.A08G139800 Gossypium hirsutum HOM05D001878 ORTHO05D001737 4.5e-14 81.3 70 64.3
Gorai.004G167100 Gossypium raimondii HOM05D001878 ORTHO05D001737 4.5e-14 81.3 70 64.3
Sed0021214 Sechium edule HOM05D001878 ORTHO05D001737 4.5e-14 81.3 69 63.8
Cfa011046 Carpinus fangiana HOM05D001878 ORTHO05D001737 5.9e-14 80.9 79 62.0
Haze_02877 Corylus avellana HOM05D001878 ORTHO05D001737 5.9e-14 80.9 79 62.0
Atru.chr5.102 Acer truncatum HOM05D001878 ORTHO05D001737 1.3e-13 79.7 69 62.3
PGSC0003DMG400001696 Solanum tuberosum HOM05D001878 ORTHO05D001737 1.3e-13 79.7 70 62.9
CANSAT25G3641 Cannabis sativa HOM05D001878 ORTHO05D001737 2.9e-13 78.6 77 61.0
Glyma.07G254502 Glycine max HOM05D001878 ORTHO05D001737 2.9e-13 78.6 77 62.3
Hma1.2p1_0632F.1_g192450 Hydrangea macrophylla HOM05D001878 ORTHO05D001737 5.0e-13 77.8 64 64.1
TAR629G0579 Trochodendron aralioides HOM05D001878 ORTHO05D001737 1.1e-12 76.6 77 57.1
COL.COLO4_18392 Corchorus olitorius HOM05D001878 ORTHO05D001737 1.9e-12 75.9 70 60.0
FAN01G1421 Fragaria x ananassa HOM05D001878 ORTHO05D001737 1.9e-12 75.9 77 59.7
DCAR_029489 Daucus carota HOM05D001878 ORTHO05D001737 2.5e-12 75.5 77 54.5
PSO782G1295 Papaver somniferum HOM05D001878 ORTHO05D001737 3.2e-12 75.1 79 53.2
TPR.G28130 Trifolium pratense HOM05D001878 ORTHO05D001737 3.2e-12 75.1 64 64.1
Duzib268G0102 Durio zibethinus HOM05D001878 ORTHO05D001737 4.2e-12 74.7 70 60.0
CiPaw.13G024400 Carya illinoinensis HOM05D001878 ORTHO05D001737 5.5e-12 74.3 77 58.4
Glyma.18G248000 Glycine max HOM05D001878 ORTHO05D001737 5.5e-12 74.3 71 59.2
Sopen01g035660 Solanum pennellii HOM05D001878 ORTHO05D001737 5.5e-12 74.3 75 60.0
CiPaw.14G018500 Carya illinoinensis HOM05D001878 ORTHO05D001737 7.2e-12 73.9 77 59.7
Manes.05G056800 Manihot esculenta HOM05D001878 ORTHO05D001737 7.2e-12 73.9 77 58.4
PSO063G3234 Papaver somniferum HOM05D001878 ORTHO05D001737 7.2e-12 73.9 79 51.9
TWI14G1354 Tripterygium wilfordii HOM05D001878 ORTHO05D001737 1.2e-11 73.2 70 57.1
Lalb_Chr07g0195291 Lupinus albus HOM05D001878 ORTHO05D001737 2.8e-11 72.0 77 55.8
Lalb_Chr13g0290701 Lupinus albus HOM05D001878 ORTHO05D001737 3.6e-11 71.6 70 55.7
Solyc01g088820.2 Solanum lycopersicum HOM05D001878 ORTHO05D001737 3.6e-11 71.6 70 58.6
Glyma.08G051800 Glycine max HOM05D001878 ORTHO05D001737 4.7e-11 71.2 77 57.1
Rhsim01G0141600 Rhododendron simsii HOM05D001878 ORTHO05D001737 8.0e-11 70.5 70 57.1
Sabra02G0150600 Salix brachista HOM05D001878 ORTHO05D001737 8.0e-11 70.5 70 52.9
Ciclev10020863m.g Citrus clementina HOM05D001878 ORTHO05D001737 1.0e-10 70.1 71 56.3
Lalb_Chr07g0177461 Lupinus albus HOM05D001878 ORTHO05D001737 1.0e-10 70.1 68 58.8
Potri.002G139500 Populus trichocarpa HOM05D001878 ORTHO05D001737 1.8e-10 69.3 77 53.2
CDE12G0966 Ceratophyllum demersum HOM05D006150 ORTHO05D007745 2.3e-10 68.9 73 52.1
Medtr7g081190 Medicago truncatula HOM05D001878 ORTHO05D001737 2.3e-10 68.9 69 58.0
Oeu037430.1 Olea europaea HOM05D001878 ORTHO05D001737 2.3e-10 68.9 68 55.9
Dinv28878 Davidia involucrata HOM05D001878 ORTHO05D001737 3.0e-10 68.6 67 55.2
Medtr4g117990 Medicago truncatula HOM05D001878 ORTHO05D001737 3.0e-10 68.6 80 50.0
Duzib133G0474 Durio zibethinus HOM05D001878 ORTHO05D001737 4.0e-10 68.2 69 56.5
Glyma.09G245300 Glycine max HOM05D001878 ORTHO05D001737 4.0e-10 68.2 71 54.9
Rhsim07G0136200 Rhododendron simsii HOM05D001878 ORTHO05D001737 5.2e-10 67.8 79 46.8
Lsat_1_v5_gn_1_84200 Lactuca sativa HOM05D001878 ORTHO05D001737 8.8e-10 67.0 68 55.9
vmacro21925 Vaccinium macrocarpon HOM05D001878 ORTHO05D001737 8.8e-10 67.0 80 48.8
BolC1t02491H Brassica oleracea HOM05D001878 ORTHO05D001737 1.5e-09 66.2 77 49.4
BraA01t01951Z Brassica rapa HOM05D001878 ORTHO05D001737 1.5e-09 66.2 77 49.4
COL.COLO4_06677 Corchorus olitorius HOM05D001878 ORTHO05D001737 1.5e-09 66.2 70 48.6
Phvul.008G049300 Phaseolus vulgaris HOM05D001878 ORTHO05D001737 1.5e-09 66.2 71 53.5
VMungo1383G0933 Vigna mungo HOM05D001878 ORTHO05D001737 1.5e-09 66.2 71 53.5
Carub.0007s2434 Capsella rubella HOM05D001878 ORTHO05D001737 2.0e-09 65.9 74 50.0
Lsat_1_v5_gn_1_84280 Lactuca sativa HOM05D001878 ORTHO05D001737 2.0e-09 65.9 72 52.8
Peaxi162Scf00853g00433 Petunia axillaris HOM05D001878 ORTHO05D001737 2.0e-09 65.9 70 55.7
TWI15G0283 Tripterygium wilfordii HOM05D001878 ORTHO05D001737 2.0e-09 65.9 65 55.4
TWI15G0285 Tripterygium wilfordii HOM05D001878 ORTHO05D001737 2.0e-09 65.9 65 55.4
AL7G37650 Arabidopsis lyrata HOM05D001878 ORTHO05D001737 2.6e-09 65.5 74 50.0
AT4G17060 Arabidopsis thaliana HOM05D001878 ORTHO05D001737 2.6e-09 65.5 74 50.0
Nn1g05420 Nelumbo nucifera HOM05D001878 ORTHO05D001737 2.6e-09 65.5 69 50.7
Oeu026349.1 Olea europaea HOM05D001878 ORTHO05D001737 4.4e-09 64.7 66 56.1
Thecc.01G400100 Theobroma cacao HOM05D001878 ORTHO05D001737 4.4e-09 64.7 70 54.3
TWI60G1396 Tripterygium wilfordii HOM05D001878 ORTHO05D001737 4.4e-09 64.7 65 55.4
CSS0013278 Camellia sinensis var. sinensis HOM05D001878 ORTHO05D001737 5.7e-09 64.3 67 53.7
CARHR223640 Cardamine hirsuta HOM05D001878 ORTHO05D001737 5.7e-09 64.3 74 48.6
RcHm_v2.0_Chr7g0205761 Rosa chinensis HOM05D001878 ORTHO05D001737 5.7e-09 64.3 78 46.2
BcaNung00128 Brassica carinata HOM05D001878 ORTHO05D001737 7.5e-09 63.9 74 48.6
Thhalv10025276m.g Eutrema salsugineum HOM05D001878 ORTHO05D001737 7.5e-09 63.9 74 50.0
SalBow4G2533 Salvia bowleyana HOM05D001878 ORTHO05D001737 7.5e-09 63.9 65 55.4
THA.LOC104812737 Tarenaya hassleriana HOM05D001878 ORTHO05D001737 9.8e-09 63.5 78 42.3
Aa31LG2G13170 Aethionema arabicum HOM05D001878 ORTHO05D001737 1.3e-08 63.2 76 50.0
ECA246G4732 Erigeron canadensis HOM05D001878 ORTHO05D001737 1.3e-08 63.2 69 47.8
Lsat_1_v5_gn_3_15221 Lactuca sativa HOM05D001878 ORTHO05D001737 1.3e-08 63.2 65 52.3
Nn1g00752 Nelumbo nucifera HOM05D001878 ORTHO05D001737 1.3e-08 63.2 77 50.6
Ca_08044_v3 Cicer arietinum L. HOM05D001878 ORTHO05D001737 2.8e-08 62.0 68 55.9
Psat3g099720 Pisum sativum HOM05D001878 ORTHO05D001737 2.8e-08 62.0 69 55.1
Ah.01g019780 Amaranthus hybridus HOM05D001878 ORTHO05D001737 3.7e-08 61.6 59 57.6
A01p20250 Brassica napus HOM05D001887 ORTHO05D003756 3.7e-08 61.6 61 50.8
C01p25390 Brassica napus HOM05D001887 ORTHO05D003756 3.7e-08 61.6 61 50.8
Oeu060056.1 Olea europaea HOM05D001878 ORTHO05D001737 3.7e-08 61.6 77 46.8
EL10Ac9g21782 Beta vulgaris HOM05D001878 ORTHO05D001737 4.9e-08 61.2 58 56.9
Eucgr.E01658 Eucalyptus grandis HOM05D001878 ORTHO05D001737 4.9e-08 61.2 75 50.7
PGR031G2290 Punica granatum HOM05D001878 ORTHO05D001737 4.9e-08 61.2 76 47.4
SEGI_08721 Sequoiadendron giganteum HOM05D001878 ORTHO05D001737 4.9e-08 61.2 69 47.8
SEGI_35524 Sequoiadendron giganteum HOM05D001878 ORTHO05D001737 4.9e-08 61.2 69 47.8
Sabra01G0120400 Salix brachista HOM05D001878 ORTHO05D001737 6.3e-08 60.8 80 47.5
TAR362G0174 Trochodendron aralioides HOM05D001878 ORTHO05D001737 6.3e-08 60.8 65 52.3
ECA240G4769 Erigeron canadensis HOM05D001878 ORTHO05D001737 8.3e-08 60.5 62 50.0
ECA246G4246 Erigeron canadensis HOM05D001878 ORTHO05D001737 8.3e-08 60.5 70 45.7
HanXRQChr01g0016011 Helianthus annuus HOM05D001878 ORTHO05D001737 1.1e-07 60.1 64 50.0
Lsat_1_v5_gn_3_15241 Lactuca sativa HOM05D001878 ORTHO05D001737 1.4e-07 59.7 65 47.7
Cpa.g.sc41.83 Carica papaya HOM05D001878 ORTHO05D001737 1.8e-07 59.3 70 51.4
ECA248G2444 Erigeron canadensis HOM05D001878 ORTHO05D001737 1.8e-07 59.3 69 47.8
Oeu019262.1 Olea europaea HOM05D001878 ORTHO05D001737 1.8e-07 59.3 68 50.0
EL10Ac5g12265 Beta vulgaris HOM05D001878 ORTHO05D001737 2.4e-07 58.9 62 51.6
MBI04_g13859_MAGBIO Magnolia biondii HOM05D001878 ORTHO05D001737 2.4e-07 58.9 75 45.3
Manes.02G045500 Manihot esculenta HOM05D001878 ORTHO05D001737 3.1e-07 58.5 70 47.1
Prupe.5G055100 Prunus persica HOM05D001878 ORTHO05D001737 4.1e-07 58.2 77 42.9
HanXRQChr03g0089721 Helianthus annuus HOM05D001878 ORTHO05D001737 5.4e-07 57.8 69 43.5
Lj1g0024989 Lotus japonicus HOM05D001878 ORTHO05D001737 5.4e-07 57.8 77 50.6
Potri.001G150600 Populus trichocarpa HOM05D001878 ORTHO05D001737 5.4e-07 57.8 80 46.2
Aa31LG9G15110 Aethionema arabicum HOM05D001878 ORTHO05D001737 7.0e-07 57.4 78 43.6
Cc08_g11310 Coffea canephora HOM05D001878 ORTHO05D001737 7.0e-07 57.4 66 48.5
ATR0684G037 Amborella trichopoda HOM05D001878 ORTHO05D001737 9.2e-07 57.0 68 44.1
Potri.014G051200 Populus trichocarpa HOM05D001878 ORTHO05D001737 9.2e-07 57.0 77 48.1
HanXRQChr17g0533971 Helianthus annuus HOM05D001878 ORTHO05D001737 1.2e-06 56.6 69 47.8
PSO541G5009 Papaver somniferum HOM05D001878 ORTHO05D001737 1.2e-06 56.6 68 44.1
Gohir.A08G162900 Gossypium hirsutum HOM05D001878 ORTHO05D001737 1.6e-06 56.2 63 46.0
Ah.08g213030 Amaranthus hybridus HOM05D001878 ORTHO05D001737 2.0e-06 55.8 64 46.9
FAN04G0762 Fragaria x ananassa HOM05D001878 ORTHO05D001737 2.0e-06 55.8 79 44.3
Ah.12g053970 Amaranthus hybridus HOM05D001878 ORTHO05D001737 2.7e-06 55.5 70 44.3
FAN06G0760 Fragaria x ananassa HOM05D001878 ORTHO05D001737 2.7e-06 55.5 55 61.8
MD04G1055300 Malus domestica HOM05D001878 ORTHO05D001737 2.7e-06 55.5 69 42.0
PSO781G0031 Papaver somniferum HOM05D001878 ORTHO05D001737 2.7e-06 55.5 68 42.6
TWI59G0138 Tripterygium wilfordii HOM05D001878 ORTHO05D001737 2.7e-06 55.5 70 47.1
DCAR_008328 Daucus carota HOM05D001878 ORTHO05D001737 3.5e-06 55.1 63 46.0
Os10g0564200 Oryza sativa ssp. japonica HOM05D001878 ORTHO05D001737 3.5e-06 55.1 57 50.9
SGA_v2.0_scaffold94G28622 Striga asiatica HOM05D001878 ORTHO05D001737 3.5e-06 55.1 70 47.1
CSS0022915 Camellia sinensis var. sinensis HOM05D001878 ORTHO05D001737 5.9e-06 54.3 69 46.4
HanXRQChr01g0017711 Helianthus annuus HOM05D001878 ORTHO05D001737 7.8e-06 53.9 71 47.9
Phvul.003G097500 Phaseolus vulgaris HOM05D001878 ORTHO05D001737 7.8e-06 53.9 77 48.1
TAR375G1013 Trochodendron aralioides HOM05D001878 ORTHO05D001737 7.8e-06 53.9 70 44.3


User provided reference genes

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