Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g05094 Brassica carinata HOM05D001405 ORTHO05D018607 2.1e-40 168.7 93 100.0
BolC3t18713H Brassica oleracea HOM05D002535 ORTHO05D018607 7.5e-30 133.7 83 91.6
BcaB06g28194 Brassica carinata HOM05D001405 ORTHO05D001264 5.4e-28 127.5 84 83.3
BcaC01g02455 Brassica carinata HOM05D002535 ORTHO05D018607 9.2e-28 126.7 83 84.3
C03p64550 Brassica napus HOM05D002535 ORTHO05D018607 1.6e-27 125.9 83 84.3
BcaC02g08201 Brassica carinata HOM05D001405 ORTHO05D001264 1.1e-25 119.8 86 80.2
BolC4t27259H Brassica oleracea HOM05D001405 ORTHO05D001264 2.5e-25 118.6 80 86.2
C04p57340 Brassica napus HOM05D001405 ORTHO05D001264 9.5e-25 116.7 80 85.0
A04p21390 Brassica napus HOM05D001405 ORTHO05D001264 6.8e-23 110.5 80 81.2
BraA04t17706Z Brassica rapa HOM05D001405 ORTHO05D001264 6.8e-23 110.5 80 81.2
BraA07t29582Z Brassica rapa HOM05D001405 ORTHO05D001264 8.9e-23 110.2 84 79.8
A07p18720 Brassica napus HOM05D001405 ORTHO05D001264 1.5e-22 109.4 89 74.2
BolC3t15388H Brassica oleracea HOM05D002535 ORTHO05D018607 3.2e-20 101.7 54 100.0
Carub.0004s0900 Capsella rubella HOM05D001405 ORTHO05D001264 3.9e-18 94.7 97 67.0
Aa31LG5G7940 Aethionema arabicum HOM05D001405 ORTHO05D001264 5.1e-18 94.4 96 62.5
Thhalv10017094m.g Eutrema salsugineum HOM05D001405 ORTHO05D001264 8.6e-18 93.6 104 62.5
Sp4g11000 Schrenkiella parvula HOM05D001405 ORTHO05D001264 8.6e-18 93.6 98 62.2
AL4G21940 Arabidopsis lyrata HOM05D001405 ORTHO05D001264 1.4e-15 86.3 92 63.0
C03p30400 Brassica napus HOM05D002535 ORTHO05D018607 4.0e-15 84.7 47 97.9
CARHR121080 Cardamine hirsuta HOM05D001405 ORTHO05D001264 4.9e-13 77.8 90 61.1
THA.LOC104826391 Tarenaya hassleriana HOM05D001405 ORTHO05D001264 3.2e-12 75.1 97 53.6
Duzib170G0604 Durio zibethinus HOM05D001405 ORTHO05D001264 1.6e-11 72.8 91 51.6
Potri.004G216700 Populus trichocarpa HOM05D001405 ORTHO05D001264 2.1e-11 72.4 91 54.9
Dinv29381 Davidia involucrata HOM05D001405 ORTHO05D001264 2.7e-11 72.0 91 51.6
Cpa.g.sc1.4 Carica papaya HOM05D001405 ORTHO05D001264 7.8e-11 70.5 87 55.2
TAR623G1214 Trochodendron aralioides HOM05D001405 ORTHO05D001264 7.8e-11 70.5 90 54.4
Atru.chr3.3507 Acer truncatum HOM05D001405 ORTHO05D001264 1.3e-10 69.7 97 46.4
Atru.chr3.3514 Acer truncatum HOM05D001405 ORTHO05D001264 1.3e-10 69.7 97 46.4
arahy.Tifrunner.gnm1.ann1.QEYP2G Arachis hypogaea HOM05D001405 ORTHO05D001264 1.3e-10 69.7 68 60.3
Sabra04G0147400 Salix brachista HOM05D001405 ORTHO05D001264 1.3e-10 69.7 83 60.2
BcaB02g09634 Brassica carinata HOM05D002535 ORTHO05D018607 1.7e-10 69.3 93 53.8
Rhsim01G0210600 Rhododendron simsii HOM05D001405 ORTHO05D001264 1.7e-10 69.3 97 46.4
vmacro14390 Vaccinium macrocarpon HOM05D001405 ORTHO05D001264 1.7e-10 69.3 95 45.3
Nn2g13855 Nelumbo nucifera HOM05D001405 ORTHO05D001264 5.1e-10 67.8 89 52.8
Ciclev10029196m.g Citrus clementina HOM05D001405 ORTHO05D001264 8.7e-10 67.0 69 59.4
AT2G28190 Arabidopsis thaliana HOM05D001405 ORTHO05D001264 1.1e-09 66.6 92 51.1
Lj1C212T1 Lonicera japonica HOM05D001405 ORTHO05D001264 1.1e-09 66.6 92 53.3
THA.LOC104815734 Tarenaya hassleriana HOM05D001405 ORTHO05D001264 1.1e-09 66.6 95 49.5
Dinv16224 Davidia involucrata HOM05D001405 ORTHO05D001264 1.5e-09 66.2 96 49.0
Duzib150G0374 Durio zibethinus HOM05D001405 ORTHO05D001264 1.5e-09 66.2 93 51.6
Medtr4g057240 Medicago truncatula HOM05D001405 ORTHO05D001264 1.5e-09 66.2 78 56.4
TWI79G1033 Tripterygium wilfordii HOM05D001405 ORTHO05D001264 1.5e-09 66.2 92 53.3
TWI79G1158 Tripterygium wilfordii HOM05D001405 ORTHO05D001264 1.5e-09 66.2 92 53.3
arahy.Tifrunner.gnm1.ann1.N5G7QD Arachis hypogaea HOM05D001405 ORTHO05D001264 1.9e-09 65.9 73 56.2
Ca_19321_v3 Cicer arietinum L. HOM05D001405 ORTHO05D001264 2.5e-09 65.5 75 60.0
Thecc.09G298500 Theobroma cacao HOM05D001405 ORTHO05D001264 2.5e-09 65.5 94 50.0
Hma1.2p1_0051F.1_g029480 Hydrangea macrophylla HOM05D001405 ORTHO05D001264 3.3e-09 65.1 95 50.5
Lsat_1_v5_gn_6_43340 Lactuca sativa HOM05D001405 ORTHO05D001264 5.6e-09 64.3 94 52.1
MELO3C026955.2 Cucumis melo HOM05D001405 ORTHO05D001264 7.3e-09 63.9 93 51.6
FAN21G4010 Fragaria x ananassa HOM05D001405 ORTHO05D001264 9.6e-09 63.5 90 51.1
FAN25G0913 Fragaria x ananassa HOM05D001405 ORTHO05D001264 9.6e-09 63.5 90 51.1
Gorai.006G104900 Gossypium raimondii HOM05D001405 ORTHO05D001264 9.6e-09 63.5 95 51.6
PGSC0003DMG400000417 Solanum tuberosum HOM05D001405 ORTHO05D001264 9.6e-09 63.5 91 46.2
TPR.G36757 Trifolium pratense HOM05D001405 ORTHO05D001264 9.6e-09 63.5 84 51.2
FvH4_3g30620 Fragaria vesca HOM05D001405 ORTHO05D001264 1.3e-08 63.2 89 47.2
Nn6g35223 Nelumbo nucifera HOM05D001405 ORTHO05D001264 1.3e-08 63.2 87 50.6
Nitab4.5_0004871g0010 Nicotiana tabacum HOM05D001405 ORTHO05D001264 1.3e-08 63.2 90 52.2
Hund01520 Selenicereus undatus HOM05D001405 ORTHO05D001264 1.3e-08 63.2 100 44.0
FAN11G2631 Fragaria x ananassa HOM05D001405 ORTHO05D001264 1.6e-08 62.8 90 51.1
Gohir.A09G088700 Gossypium hirsutum HOM05D001405 ORTHO05D001264 1.6e-08 62.8 84 53.6
Gohir.D09G088400 Gossypium hirsutum HOM05D001405 ORTHO05D001264 1.6e-08 62.8 88 52.3
HanXRQChr02g0055581 Helianthus annuus HOM05D001405 ORTHO05D001264 2.1e-08 62.4 94 52.1
Potri.009G005100 Populus trichocarpa HOM05D001405 ORTHO05D001264 2.1e-08 62.4 90 52.2
Solyc11g066390.2 Solanum lycopersicum HOM05D001405 ORTHO05D001264 2.8e-08 62.0 93 44.1
EL10Ac9g22624 Beta vulgaris HOM05D001405 ORTHO05D001264 3.6e-08 61.6 100 50.0
BcaB08g34789 Brassica carinata HOM05D000622 ORTHO05D018607 3.6e-08 61.6 44 79.5
ATR0329G010 Amborella trichopoda HOM05D001405 ORTHO05D001264 4.8e-08 61.2 89 46.1
Nitab4.5_0000173g0130 Nicotiana tabacum HOM05D001405 ORTHO05D001264 4.8e-08 61.2 90 51.1
CSS0007322 Camellia sinensis var. sinensis HOM05D001405 ORTHO05D001264 6.2e-08 60.8 88 52.3
CSS0026503 Camellia sinensis var. sinensis HOM05D001405 ORTHO05D001264 6.2e-08 60.8 88 52.3
Migut.D02293 Erythranthe guttata HOM05D001405 ORTHO05D001264 6.2e-08 60.8 98 46.9
Rhsim13G0100500 Rhododendron simsii HOM05D001405 ORTHO05D001264 6.2e-08 60.8 87 51.7
ClCG02G021620 Citrullus lanatus HOM05D001405 ORTHO05D001264 8.1e-08 60.5 86 48.8
Lj2C1007T3 Lonicera japonica HOM05D001405 ORTHO05D001264 8.1e-08 60.5 95 46.3
Psat7g191600 Pisum sativum HOM05D001405 ORTHO05D001264 8.1e-08 60.5 75 54.7
Aqoxy2G01655 Aquilegia oxysepala HOM05D001405 ORTHO05D001264 1.1e-07 60.1 96 49.0
CSS0017734 Camellia sinensis var. sinensis HOM05D001405 ORTHO05D001264 1.1e-07 60.1 97 44.3
Prupe.6G112800 Prunus persica HOM05D001405 ORTHO05D001264 1.1e-07 60.1 95 49.5
Sopen11g026140 Solanum pennellii HOM05D001405 ORTHO05D001264 1.1e-07 60.1 93 43.0
ECA233G0579 Erigeron canadensis HOM05D001405 ORTHO05D001264 1.8e-07 59.3 96 51.0
FAN16G0003 Fragaria x ananassa HOM05D001405 ORTHO05D001264 1.8e-07 59.3 90 50.0
VMungo1127G0649 Vigna mungo HOM05D001405 ORTHO05D001264 1.8e-07 59.3 69 55.1
CANSAT64G0315 Cannabis sativa HOM05D001405 ORTHO05D001264 2.4e-07 58.9 96 49.0
CsaV3_6G014400 Cucumis sativus L. HOM05D001405 ORTHO05D001264 2.4e-07 58.9 95 48.4
Peaxi162Scf00983g00213 Petunia axillaris HOM05D001405 ORTHO05D001264 2.4e-07 58.9 97 43.3
Phvul.011G086300 Phaseolus vulgaris HOM05D001405 ORTHO05D001264 2.4e-07 58.9 69 52.2
Sabra09G0002300 Salix brachista HOM05D001405 ORTHO05D001264 3.1e-07 58.5 90 48.9
Lalb_Chr01g0004601 Lupinus albus HOM05D001405 ORTHO05D001264 4.0e-07 58.2 87 47.1
DCAR_015506 Daucus carota HOM05D001405 ORTHO05D001264 5.3e-07 57.8 89 47.2
Lj3g0015755 Lotus japonicus HOM05D001405 ORTHO05D001264 5.3e-07 57.8 77 55.8
Haze_23700 Corylus avellana HOM05D001405 ORTHO05D001264 6.9e-07 57.4 92 51.1
Gohir.A05G086900 Gossypium hirsutum HOM05D001405 ORTHO05D001264 6.9e-07 57.4 89 44.9
Sc21g0000320 Simmondsia chinensis HOM05D001405 ORTHO05D001264 6.9e-07 57.4 66 56.1
MD03G1128900 Malus domestica HOM05D001405 ORTHO05D001264 9.0e-07 57.0 89 51.7
Ah.01g014110 Amaranthus hybridus HOM05D001405 ORTHO05D001264 1.2e-06 56.6 89 44.9
Glyma.11G192700 Glycine max HOM05D001405 ORTHO05D001264 1.2e-06 56.6 69 53.6
Glyma.12G081300 Glycine max HOM05D001405 ORTHO05D001264 1.2e-06 56.6 69 53.6
AUR62014976 Chenopodium quinoa HOM05D001405 ORTHO05D001264 1.5e-06 56.2 102 47.1
QL01p015008 Quercus lobata HOM05D001405 ORTHO05D001264 1.5e-06 56.2 96 50.0
SalBow6G1068 Salvia bowleyana HOM05D001405 ORTHO05D001264 2.0e-06 55.8 86 48.8
GSVIVG01031462001 Vitis vinifera HOM05D001405 ORTHO05D001264 2.6e-06 55.5 87 46.0
AagrBONN_evm.TU.Sc2ySwM_228.818 Anthoceros agrestis HOM05D001405 ORTHO05D001264 3.4e-06 55.1 77 46.8
Lalb_Chr03g0027701 Lupinus albus HOM05D001405 ORTHO05D001264 4.4e-06 54.7 79 46.8
MD11G1148200 Malus domestica HOM05D001405 ORTHO05D001264 5.8e-06 54.3 90 45.6
SGA_v2.0_scaffold277G46694 Striga asiatica HOM05D001405 ORTHO05D001264 5.8e-06 54.3 97 44.3
PGR119G1565 Punica granatum HOM05D001405 ORTHO05D001264 9.9e-06 53.5 82 48.8


User provided reference genes

Program Settings