Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g05081 Brassica carinata HOM05D002964 ORTHO05D003498 6.1e-45 183.7 89 100.0
C03p30460 Brassica napus HOM05D002964 ORTHO05D003498 7.9e-45 183.3 88 100.0
BolC3t15394H Brassica oleracea HOM05D002964 ORTHO05D003498 7.9e-45 183.3 88 100.0
Sp4g28320 Schrenkiella parvula HOM05D002964 ORTHO05D003498 7.4e-35 150.2 89 84.3
A05p01520 Brassica napus HOM05D002964 ORTHO05D003498 2.4e-33 145.2 91 83.5
BraA05t19148Z Brassica rapa HOM05D002964 ORTHO05D003498 2.4e-33 145.2 91 83.5
AL4G45550 Arabidopsis lyrata HOM05D002964 ORTHO05D003498 1.6e-32 142.5 93 79.6
AT2G46270 Arabidopsis thaliana HOM05D002964 ORTHO05D003498 2.6e-32 141.7 93 79.6
Carub.0004s2898 Capsella rubella HOM05D002964 ORTHO05D003498 1.0e-31 139.8 90 78.9
BcaC02g11928 Brassica carinata HOM05D002964 ORTHO05D003498 2.2e-31 138.7 89 79.8
BcaC02g12519 Brassica carinata HOM05D002964 ORTHO05D003498 5.0e-31 137.5 90 80.0
C04p01720 Brassica napus HOM05D002964 ORTHO05D003498 5.0e-31 137.5 90 80.0
BolC4t21824H Brassica oleracea HOM05D002964 ORTHO05D003498 5.0e-31 137.5 90 80.0
CARHR141540 Cardamine hirsuta HOM05D002964 ORTHO05D003498 1.2e-29 132.9 91 76.9
BcaC01g05084 Brassica carinata HOM05D002964 ORTHO05D003498 2.7e-29 131.7 95 76.8
Thhalv10001533m.g Eutrema salsugineum HOM05D002964 ORTHO05D003498 2.3e-28 128.6 94 74.5
BcaB01g03232 Brassica carinata HOM05D002964 ORTHO05D003498 2.2e-26 122.1 96 70.8
THA.LOC104817330 Tarenaya hassleriana HOM05D002964 ORTHO05D003498 6.5e-23 110.5 76 75.0
Aa31LG1G27660 Aethionema arabicum HOM05D002964 ORTHO05D003498 1.5e-22 109.4 95 64.2
BcaC01g05086 Brassica carinata HOM05D002964 ORTHO05D003498 1.4e-20 102.8 98 64.3
Manes.01G249900 Manihot esculenta HOM05D002964 ORTHO05D003498 5.7e-19 97.4 79 63.3
THA.LOC104827687 Tarenaya hassleriana HOM05D002964 ORTHO05D003498 5.7e-19 97.4 85 62.4
Cfa003839 Carpinus fangiana HOM05D002964 ORTHO05D003498 9.8e-19 96.7 81 64.2
BcaC01g05088 Brassica carinata HOM05D002964 ORTHO05D003498 1.3e-18 96.3 102 59.8
Haze_15611 Corylus avellana HOM05D002964 ORTHO05D003498 1.7e-18 95.9 81 64.2
Glyma.19G252600 Glycine max HOM05D002964 ORTHO05D003498 1.1e-17 93.2 81 59.3
Glyma.03G255000 Glycine max HOM05D002964 ORTHO05D003498 1.8e-17 92.4 81 59.3
Ca_09488_v3 Cicer arietinum L. HOM05D002964 ORTHO05D003498 4.1e-17 91.3 76 61.8
Manes.05G026700 Manihot esculenta HOM05D002964 ORTHO05D003498 5.4e-17 90.9 79 59.5
Cc02_g38910 Coffea canephora HOM05D002964 ORTHO05D003498 1.6e-16 89.4 87 56.3
Lj1g0022187 Lotus japonicus HOM05D002964 ORTHO05D003498 1.6e-16 89.4 81 56.8
TPR.G4811 Trifolium pratense HOM05D002964 ORTHO05D003498 1.6e-16 89.4 81 58.0
Medtr7g116890 Medicago truncatula HOM05D002964 ORTHO05D003498 2.0e-16 89.0 81 58.0
Psat3g004000 Pisum sativum HOM05D002964 ORTHO05D003498 2.0e-16 89.0 81 58.0
Phvul.006G109700 Phaseolus vulgaris HOM05D002964 ORTHO05D003498 2.7e-16 88.6 81 56.8
QL04p059655 Quercus lobata HOM05D002964 ORTHO05D003498 2.7e-16 88.6 81 60.5
THA.LOC104801386 Tarenaya hassleriana HOM05D002964 ORTHO05D003498 2.7e-16 88.6 83 61.4
MD01G1074700 Malus domestica HOM05D002964 ORTHO05D003498 4.5e-16 87.8 77 66.2
QL02p015160 Quercus lobata HOM05D002964 ORTHO05D003498 7.7e-16 87.0 81 59.3
Aa31LG5G840 Aethionema arabicum HOM05D002964 ORTHO05D003498 1.0e-15 86.7 80 62.5
MD07G1143800 Malus domestica HOM05D002964 ORTHO05D003498 1.0e-15 86.7 77 63.6
Prupe.2G182800 Prunus persica HOM05D002964 ORTHO05D003498 2.3e-15 85.5 78 59.0
Potri.014G094200 Populus trichocarpa HOM05D002964 ORTHO05D003498 2.9e-15 85.1 84 59.5
Lalb_Chr10g0100161 Lupinus albus HOM05D002964 ORTHO05D003498 3.8e-15 84.7 76 59.2
CiPaw.01G071000 Carya illinoinensis HOM05D002964 ORTHO05D003498 5.0e-15 84.3 81 58.0
Sabra14G0068800 Salix brachista HOM05D002964 ORTHO05D003498 1.1e-14 83.2 102 50.0
Hund27225 Selenicereus undatus HOM05D002964 ORTHO05D003498 1.1e-14 83.2 82 57.3
Actinidia02807 Actinidia chinensis HOM05D002964 ORTHO05D003498 1.5e-14 82.8 89 52.8
Carub.0006s3618 Capsella rubella HOM05D002964 ORTHO05D003498 1.5e-14 82.8 77 62.3
arahy.Tifrunner.gnm1.ann1.ZU4V4B Arachis hypogaea HOM05D002964 ORTHO05D003498 1.9e-14 82.4 76 57.9
Gohir.A12G110600 Gossypium hirsutum HOM05D002964 ORTHO05D003498 1.9e-14 82.4 85 54.1
arahy.Tifrunner.gnm1.ann1.IH31ZD Arachis hypogaea HOM05D002964 ORTHO05D003498 2.5e-14 82.0 76 57.9
TAR375G0177 Trochodendron aralioides HOM05D002964 ORTHO05D003498 3.3e-14 81.6 86 53.5
CSS0046846 Camellia sinensis var. sinensis HOM05D002964 ORTHO05D003498 4.2e-14 81.3 76 57.9
MBI07_g11396_MAGBIO Magnolia biondii HOM05D002964 ORTHO05D003498 4.2e-14 81.3 81 54.3
Cpa.g.sc194.18 Carica papaya HOM05D002964 ORTHO05D003498 5.5e-14 80.9 76 57.9
Lj7C504T14 Lonicera japonica HOM05D002964 ORTHO05D003498 7.2e-14 80.5 76 60.5
Solyc01g095460.3 Solanum lycopersicum HOM05D002964 ORTHO05D003498 7.2e-14 80.5 84 53.6
Sopen01g039210 Solanum pennellii HOM05D002964 ORTHO05D003498 7.2e-14 80.5 84 53.6
VMungo0540G1601 Vigna mungo HOM05D002964 ORTHO05D003498 7.2e-14 80.5 81 53.1
Gorai.008G123200 Gossypium raimondii HOM05D002964 ORTHO05D003498 9.5e-14 80.1 85 52.9
Ciclev10020314m.g Citrus clementina HOM05D002964 ORTHO05D003498 1.2e-13 79.7 81 54.3
Hma1.2p1_0077F.1_g039840 Hydrangea macrophylla HOM05D002964 ORTHO05D003498 1.2e-13 79.7 83 51.8
Migut.B01828 Erythranthe guttata HOM05D002964 ORTHO05D003498 1.6e-13 79.3 76 57.9
Thhalv10028761m.g Eutrema salsugineum HOM05D002964 ORTHO05D003498 2.1e-13 79.0 77 61.0
Psat4g158440 Pisum sativum HOM05D002964 ORTHO05D003498 2.1e-13 79.0 76 55.3
CsaV3_3G008360 Cucumis sativus L. HOM05D002964 ORTHO05D003498 2.8e-13 78.6 79 51.9
Potri.002G167100 Populus trichocarpa HOM05D002964 ORTHO05D003498 2.8e-13 78.6 84 54.8
VMungo0331G1027 Vigna mungo HOM05D002964 ORTHO05D003498 2.8e-13 78.6 81 54.3
SalBow3G2159 Salvia bowleyana HOM05D002964 ORTHO05D003498 3.6e-13 78.2 74 56.8
Ah.05g179930 Amaranthus hybridus HOM05D002964 ORTHO05D003498 4.7e-13 77.8 87 51.7
CAN.G986.51 Capsicum annuum HOM05D002964 ORTHO05D003498 4.7e-13 77.8 82 53.7
Lalb_Chr17g0342241 Lupinus albus HOM05D002964 ORTHO05D003498 4.7e-13 77.8 75 54.7
AL6G52240 Arabidopsis lyrata HOM05D002964 ORTHO05D003498 8.0e-13 77.0 78 61.5
MELO3C006054.2 Cucumis melo HOM05D002964 ORTHO05D003498 8.0e-13 77.0 82 53.7
Gohir.D12G113600 Gossypium hirsutum HOM05D002964 ORTHO05D003498 8.0e-13 77.0 85 51.8
Sed0018793 Sechium edule HOM05D002964 ORTHO05D003498 8.0e-13 77.0 82 52.4
MSTRG.17316 Avicennia marina HOM05D002964 ORTHO05D003498 1.0e-12 76.6 76 53.9
Lalb_Chr04g0261701 Lupinus albus HOM05D002964 ORTHO05D003498 1.0e-12 76.6 81 53.1
Medtr8g028150 Medicago truncatula HOM05D002964 ORTHO05D003498 1.0e-12 76.6 81 51.9
GSVIVG01027040001 Vitis vinifera HOM05D002964 ORTHO05D003498 1.0e-12 76.6 86 52.3
AT4G01120 Arabidopsis thaliana HOM05D002964 ORTHO05D003498 1.4e-12 76.3 75 56.0
CSS0008805 Camellia sinensis var. sinensis HOM05D002964 ORTHO05D003498 1.4e-12 76.3 76 53.9
Duzib133G0452 Durio zibethinus HOM05D002964 ORTHO05D003498 1.4e-12 76.3 81 50.6
Rhsim07G0007600 Rhododendron simsii HOM05D002964 ORTHO05D003498 1.4e-12 76.3 78 55.1
Sp6g00990 Schrenkiella parvula HOM05D002964 ORTHO05D003498 1.4e-12 76.3 77 58.4
PGSC0003DMG400000088 Solanum tuberosum HOM05D002964 ORTHO05D003498 1.4e-12 76.3 84 51.2
ClCG05G001030 Citrullus lanatus HOM05D002964 ORTHO05D003498 1.8e-12 75.9 79 51.9
Dinv32548 Davidia involucrata HOM05D002964 ORTHO05D003498 1.8e-12 75.9 76 53.9
Eucgr.E00078 Eucalyptus grandis HOM05D002964 ORTHO05D003498 1.8e-12 75.9 80 52.5
Phvul.010G108800 Phaseolus vulgaris HOM05D002964 ORTHO05D003498 1.8e-12 75.9 81 53.1
Sc01g0003020 Simmondsia chinensis HOM05D002964 ORTHO05D003498 1.8e-12 75.9 86 53.5
RcHm_v2.0_Chr1g0358601 Rosa chinensis HOM05D002964 ORTHO05D003498 2.3e-12 75.5 82 53.7
Actinidia28491 Actinidia chinensis HOM05D002964 ORTHO05D003498 3.0e-12 75.1 79 51.9
EL10Ac1g00320 Beta vulgaris HOM05D002964 ORTHO05D003498 3.0e-12 75.1 85 51.8
Ca_23564_v3 Cicer arietinum L. HOM05D002964 ORTHO05D003498 3.0e-12 75.1 82 53.7
Lj3g0019075 Lotus japonicus HOM05D002964 ORTHO05D003498 3.0e-12 75.1 81 51.9
Sed0002682 Sechium edule HOM05D002964 ORTHO05D003498 3.0e-12 75.1 80 53.8
Peaxi162Scf01012g00240 Petunia axillaris HOM05D002964 ORTHO05D003498 4.0e-12 74.7 82 53.7
Hma1.2p1_0384F.1_g140960 Hydrangea macrophylla HOM05D002964 ORTHO05D003498 5.2e-12 74.3 76 53.9
SGA_v2.0_scaffold5G02980 Striga asiatica HOM05D002964 ORTHO05D003498 5.2e-12 74.3 76 55.3
TAR636G0864 Trochodendron aralioides HOM05D002964 ORTHO05D003498 5.2e-12 74.3 86 48.8
A09p00170 Brassica napus HOM05D002964 ORTHO05D003498 6.8e-12 73.9 96 49.0
C09p00800 Brassica napus HOM05D002964 ORTHO05D003498 6.8e-12 73.9 76 55.3
BolC9t53014H Brassica oleracea HOM05D002964 ORTHO05D003498 6.8e-12 73.9 76 55.3
BraA09t35745Z Brassica rapa HOM05D002964 ORTHO05D003498 6.8e-12 73.9 96 49.0
Gohir.D11G098900 Gossypium hirsutum HOM05D002964 ORTHO05D003498 6.8e-12 73.9 81 53.1
Gorai.007G105100 Gossypium raimondii HOM05D002964 ORTHO05D003498 6.8e-12 73.9 81 53.1
Thecc.01G348400 Theobroma cacao HOM05D002964 ORTHO05D003498 1.5e-11 72.8 81 48.1
Glyma.16G029000 Glycine max HOM05D002964 ORTHO05D003498 2.0e-11 72.4 81 49.4
TAR629G0874 Trochodendron aralioides HOM05D002964 ORTHO05D003498 2.0e-11 72.4 81 49.4
AUR62004443 Chenopodium quinoa HOM05D002964 ORTHO05D003498 2.6e-11 72.0 87 52.9
FvH4_7g15810 Fragaria vesca HOM05D002964 ORTHO05D003498 2.6e-11 72.0 77 53.2
FAN03G0643 Fragaria x ananassa HOM05D002964 ORTHO05D003498 2.6e-11 72.0 77 53.2
FAN06G1730 Fragaria x ananassa HOM05D002964 ORTHO05D003498 2.6e-11 72.0 77 53.2
Gohir.A08G126200 Gossypium hirsutum HOM05D002964 ORTHO05D003498 2.6e-11 72.0 81 48.1
CARHR249170 Cardamine hirsuta HOM05D002964 ORTHO05D003498 3.4e-11 71.6 75 57.3
COL.COLO4_06341 Corchorus olitorius HOM05D002964 ORTHO05D003498 4.4e-11 71.2 81 51.9
CANSAT80G0627 Cannabis sativa HOM05D002964 ORTHO05D003498 5.7e-11 70.9 83 47.0
AUR62023507 Chenopodium quinoa HOM05D002964 ORTHO05D003498 5.7e-11 70.9 87 52.9
FAN01G2403 Fragaria x ananassa HOM05D002964 ORTHO05D003498 9.8e-11 70.1 77 51.9
FAN10G1972 Fragaria x ananassa HOM05D002964 ORTHO05D003498 9.8e-11 70.1 77 53.2
Gohir.A11G093900 Gossypium hirsutum HOM05D002964 ORTHO05D003498 9.8e-11 70.1 76 50.0
Atru.chr5.612 Acer truncatum HOM05D002964 ORTHO05D003498 1.7e-10 69.3 76 51.3
PGSC0003DMG400033876 Solanum tuberosum HOM05D002964 ORTHO05D003498 1.7e-10 69.3 81 50.6
FAN06G4642 Fragaria x ananassa HOM05D002964 ORTHO05D003498 2.2e-10 68.9 77 51.9
Glyma.07G060400 Glycine max HOM05D002964 ORTHO05D003498 2.8e-10 68.6 81 49.4
Gohir.D08G147500 Gossypium hirsutum HOM05D002964 ORTHO05D003498 2.8e-10 68.6 81 45.7
Gorai.004G153100 Gossypium raimondii HOM05D002964 ORTHO05D003498 2.8e-10 68.6 81 45.7
arahy.Tifrunner.gnm1.ann1.R6IGW9 Arachis hypogaea HOM05D002964 ORTHO05D003498 6.3e-10 67.4 74 54.1
FAN10G2340 Fragaria x ananassa HOM05D002964 ORTHO05D003498 8.3e-10 67.0 77 51.9
Oeu022850.1 Olea europaea HOM05D002964 ORTHO05D003498 1.1e-09 66.6 81 45.7
Sopen05g028650 Solanum pennellii HOM05D002964 ORTHO05D003498 1.1e-09 66.6 86 47.7
DCAR_006961 Daucus carota HOM05D002964 ORTHO05D003498 1.4e-09 66.2 76 48.7
PSO135G0850 Papaver somniferum HOM05D002964 ORTHO05D003498 1.4e-09 66.2 84 47.6
MSTRG.20883 Avicennia marina HOM05D002964 ORTHO05D003498 1.8e-09 65.9 73 52.1
PSO384G3637 Papaver somniferum HOM05D002964 ORTHO05D003498 2.4e-09 65.5 81 48.1
arahy.Tifrunner.gnm1.ann1.CS824N Arachis hypogaea HOM05D002964 ORTHO05D003498 3.1e-09 65.1 74 52.7
TWI23G0265 Tripterygium wilfordii HOM05D002964 ORTHO05D003498 3.1e-09 65.1 76 48.7
vmacro22521 Vaccinium macrocarpon HOM05D002964 ORTHO05D003498 3.1e-09 65.1 76 50.0
CANSAT56G2985 Cannabis sativa HOM05D002964 ORTHO05D003498 7.0e-09 63.9 84 42.9
CiPaw.02G038000 Carya illinoinensis HOM05D002964 ORTHO05D003498 7.0e-09 63.9 81 48.1
TWI14G0006 Tripterygium wilfordii HOM05D002964 ORTHO05D003498 1.2e-08 63.2 76 47.4
TPR.G5071 Trifolium pratense HOM05D002964 ORTHO05D003498 2.0e-08 62.4 87 43.7
PGR031G3045 Punica granatum HOM05D002964 ORTHO05D003498 2.7e-08 62.0 73 49.3
Aqoxy7G00219 Aquilegia oxysepala HOM05D002964 ORTHO05D003498 3.5e-08 61.6 79 49.4
Solyc05g050220.3 Solanum lycopersicum HOM05D002964 ORTHO05D003498 4.5e-08 61.2 79 48.1
arahy.Tifrunner.gnm1.ann1.SH3ZYI Arachis hypogaea HOM05D002964 ORTHO05D003498 5.9e-08 60.8 76 48.7
Nitab4.5_0003779g0050 Nicotiana tabacum HOM05D002964 ORTHO05D003498 1.3e-07 59.7 81 48.1
Peaxi162Scf00403g00716 Petunia axillaris HOM05D002964 ORTHO05D003498 1.7e-07 59.3 85 43.5
CDE08G1210 Ceratophyllum demersum HOM05D002964 ORTHO05D003498 2.9e-07 58.5 80 47.5
Aqoxy416s001 Aquilegia oxysepala HOM05D002964 ORTHO05D003498 3.9e-07 58.2 80 43.8
Duzib138G1760 Durio zibethinus HOM05D002964 ORTHO05D003498 5.0e-07 57.8 78 51.3
Cpa.g.sc50.128 Carica papaya HOM05D002964 ORTHO05D003498 6.6e-07 57.4 76 46.1
HanXRQChr04g0120731 Helianthus annuus HOM05D002964 ORTHO05D003498 6.6e-07 57.4 39 64.1
Oeu036581.2 Olea europaea HOM05D002964 ORTHO05D003498 6.6e-07 57.4 81 42.0
CDE02G3466 Ceratophyllum demersum HOM05D000033 ORTHO05D001999 8.6e-07 57.0 86 45.3
Nn7g37373 Nelumbo nucifera HOM05D002964 ORTHO05D003498 8.6e-07 57.0 71 46.5
Nitab4.5_0002262g0160 Nicotiana tabacum HOM05D002964 ORTHO05D003498 1.1e-06 56.6 84 42.9
HanXRQChr17g0562621 Helianthus annuus HOM05D002964 ORTHO05D003498 1.9e-06 55.8 70 48.6
Os05g0569300 Oryza sativa ssp. japonica HOM05D002964 ORTHO05D003498 4.3e-06 54.7 86 41.9
Zm00001eb296340 Zea mays HOM05D002964 ORTHO05D003498 5.6e-06 54.3 80 42.5
Lsat_1_v5_gn_3_139040 Lactuca sativa HOM05D002964 ORTHO05D003498 7.3e-06 53.9 45 55.6


User provided reference genes

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