Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g04955 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 2120.9 1123 100.0
BolC3t15517H Brassica oleracea HOM05D004020 ORTHO05D004735 0.0e+00 2110.1 1129 99.5
A03p26460 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 2081.2 1124 97.7
C03p31750 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 2074.7 1125 97.9
BcaB01g03084 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 2045.8 1123 95.5
Sp4g10720 Schrenkiella parvula HOM05D004020 ORTHO05D004735 0.0e+00 1899.0 1135 89.1
Thhalv10016162m.g Eutrema salsugineum HOM05D004020 ORTHO05D004735 0.0e+00 1864.0 1137 87.2
AT2G27900 Arabidopsis thaliana HOM05D004020 ORTHO05D004735 0.0e+00 1855.5 1131 87.1
Carub.0004s0864 Capsella rubella HOM05D004020 ORTHO05D004735 0.0e+00 1840.1 1139 86.4
AL4G22350 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 0.0e+00 1836.2 1130 86.3
Aa31LG5G8160 Aethionema arabicum HOM05D004020 ORTHO05D004735 0.0e+00 1812.7 1132 84.4
BraA04t17688Z Brassica rapa HOM05D004020 ORTHO05D004735 0.0e+00 1801.2 1086 87.5
A04p21190 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1773.4 1086 86.6
BolC4t27237H Brassica oleracea HOM05D004020 ORTHO05D004735 0.0e+00 1770.0 1087 86.6
BcaC02g08224 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1764.6 1089 86.1
C04p57020 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1744.6 1088 85.7
BcaB06g28175 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1735.3 1078 86.1
THA.LOC104826398 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 0.0e+00 1644.4 1134 78.0
THA.LOC104800567 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 0.0e+00 1632.1 1136 76.6
CARHR120590 Cardamine hirsuta HOM05D004020 ORTHO05D004735 0.0e+00 1522.3 940 85.5
Thecc.09G295800 Theobroma cacao HOM05D004020 ORTHO05D004735 0.0e+00 1403.3 1135 66.6
Glyma.11G191100 Glycine max HOM05D004020 ORTHO05D004735 0.0e+00 1390.9 1139 66.5
Glyma.12G083200 Glycine max HOM05D004020 ORTHO05D004735 0.0e+00 1389.8 1143 66.5
Manes.11G154000 Manihot esculenta HOM05D004020 ORTHO05D004735 0.0e+00 1388.6 1145 65.9
Cfa010130 Carpinus fangiana HOM05D004020 ORTHO05D004735 0.0e+00 1387.1 1150 65.7
BraA03t11860Z Brassica rapa HOM05D004020 ORTHO05D004735 0.0e+00 1386.3 775 96.6
COL.COLO4_19229 Corchorus olitorius HOM05D004020 ORTHO05D004735 0.0e+00 1381.7 1131 65.3
Gorai.009G089000 Gossypium raimondii HOM05D004020 ORTHO05D004735 0.0e+00 1374.0 1130 65.8
Lj3g0000902 Lotus japonicus HOM05D004020 ORTHO05D004735 0.0e+00 1374.0 1146 65.3
CiPaw.14G105600 Carya illinoinensis HOM05D004020 ORTHO05D004735 0.0e+00 1372.8 1146 64.4
Duzib168G0446 Durio zibethinus HOM05D004020 ORTHO05D004735 0.0e+00 1372.1 1133 65.1
Atru.chr3.3492 Acer truncatum HOM05D004020 ORTHO05D004735 0.0e+00 1370.9 1168 64.7
Ca_19329_v3 Cicer arietinum L. HOM05D004020 ORTHO05D004735 0.0e+00 1367.4 1142 64.5
Medtr4g056510 Medicago truncatula HOM05D004020 ORTHO05D004735 0.0e+00 1367.4 1141 65.1
Lalb_Chr19g0136831 Lupinus albus HOM05D004020 ORTHO05D004735 0.0e+00 1366.3 1141 65.5
Ciclev10027713m.g Citrus clementina HOM05D004020 ORTHO05D004735 0.0e+00 1365.9 1140 65.1
Sabra04G0148500 Salix brachista HOM05D004020 ORTHO05D004735 0.0e+00 1362.4 1138 65.1
TWI75G0197 Tripterygium wilfordii HOM05D004020 ORTHO05D004735 0.0e+00 1362.1 1152 64.9
Potri.009G002900 Populus trichocarpa HOM05D004020 ORTHO05D004735 0.0e+00 1360.1 1138 64.9
Psat7g191400 Pisum sativum HOM05D004020 ORTHO05D004735 0.0e+00 1359.0 1145 64.6
TAR633G0695 Trochodendron aralioides HOM05D004020 ORTHO05D004735 0.0e+00 1356.7 1157 63.7
Gohir.D05G087200 Gossypium hirsutum HOM05D004020 ORTHO05D004735 0.0e+00 1350.9 1130 65.4
TPR.G35043 Trifolium pratense HOM05D004020 ORTHO05D004735 0.0e+00 1346.3 1144 64.1
MD03G1129700 Malus domestica HOM05D004020 ORTHO05D004735 0.0e+00 1345.1 1140 64.1
Gohir.A05G084400 Gossypium hirsutum HOM05D004020 ORTHO05D004735 0.0e+00 1342.8 1142 64.5
Gohir.D07G110000 Gossypium hirsutum HOM05D004020 ORTHO05D004735 0.0e+00 1342.8 1131 64.3
Phvul.011G088000 Phaseolus vulgaris HOM05D004020 ORTHO05D004735 0.0e+00 1340.1 1137 64.8
Lalb_Chr01g0004661 Lupinus albus HOM05D004020 ORTHO05D004735 0.0e+00 1338.9 1138 64.0
MD11G1151500 Malus domestica HOM05D004020 ORTHO05D004735 0.0e+00 1338.2 1144 64.0
RcHm_v2.0_Chr5g0056331 Rosa chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1337.4 1141 64.2
CSS0033419 Camellia sinensis var. sinensis HOM05D004020 ORTHO05D004735 0.0e+00 1336.6 1147 63.4
Prupe.6G114700 Prunus persica HOM05D004020 ORTHO05D004735 0.0e+00 1335.5 1144 63.8
Potri.001G212600 Populus trichocarpa HOM05D004020 ORTHO05D004735 0.0e+00 1331.2 1136 64.2
FvH4_3g30380 Fragaria vesca HOM05D004020 ORTHO05D004735 0.0e+00 1328.5 1143 64.6
MELO3C004814.2 Cucumis melo HOM05D004020 ORTHO05D004735 0.0e+00 1326.2 1127 63.8
Sed0021294 Sechium edule HOM05D004020 ORTHO05D004735 0.0e+00 1325.8 1128 63.3
Actinidia07194 Actinidia chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1323.9 1146 62.8
CsaV3_1G014440 Cucumis sativus L. HOM05D004020 ORTHO05D004735 0.0e+00 1321.6 1127 63.8
Actinidia24157 Actinidia chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1318.5 1143 62.5
FAN21G0469 Fragaria x ananassa HOM05D004020 ORTHO05D004735 0.0e+00 1316.6 1136 63.8
Duzib150G0506 Durio zibethinus HOM05D004020 ORTHO05D004735 0.0e+00 1313.5 1132 63.4
FAN11G1674 Fragaria x ananassa HOM05D004020 ORTHO05D004735 0.0e+00 1309.3 1163 63.1
Rhsim13G0102300 Rhododendron simsii HOM05D004020 ORTHO05D004735 0.0e+00 1306.6 1127 62.6
PGR102G0426 Punica granatum HOM05D004020 ORTHO05D004735 0.0e+00 1306.2 1125 63.6
Nn2g13902 Nelumbo nucifera HOM05D004020 ORTHO05D004735 0.0e+00 1290.4 1152 61.2
Sopen11g026290 Solanum pennellii HOM05D004020 ORTHO05D004735 0.0e+00 1278.8 1116 62.3
CAN.G644.49 Capsicum annuum HOM05D004020 ORTHO05D004735 0.0e+00 1273.1 1130 61.5
GSVIVG01031444001 Vitis vinifera HOM05D004020 ORTHO05D004735 0.0e+00 1254.6 1084 63.2
Nitab4.5_0000173g0340 Nicotiana tabacum HOM05D004020 ORTHO05D004735 0.0e+00 1248.8 1160 59.6
Aqoxy2G01562 Aquilegia oxysepala HOM05D004020 ORTHO05D004735 0.0e+00 1246.5 1099 61.1
Cc01_g10110 Coffea canephora HOM05D004020 ORTHO05D004735 0.0e+00 1241.5 1100 61.3
MSTRG.18711 Avicennia marina HOM05D004020 ORTHO05D004735 0.0e+00 1234.9 1136 59.7
Migut.D02305 Erythranthe guttata HOM05D004020 ORTHO05D004735 0.0e+00 1234.9 1122 62.2
arahy.Tifrunner.gnm1.ann1.MMVL4X Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1233.4 1154 59.9
PSO801G0568 Papaver somniferum HOM05D004020 ORTHO05D004735 0.0e+00 1232.6 1101 60.8
vmacro03245 Vaccinium macrocarpon HOM05D004020 ORTHO05D004735 0.0e+00 1226.5 1136 59.5
PSO339G0247 Papaver somniferum HOM05D004020 ORTHO05D004735 0.0e+00 1225.7 1101 60.3
arahy.Tifrunner.gnm1.ann1.533Y7U Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1223.4 1154 59.0
Sc06g0008980 Simmondsia chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1219.5 1115 60.7
HanXRQChr14g0451831 Helianthus annuus HOM05D004020 ORTHO05D004735 0.0e+00 1219.1 1096 60.8
Lsat_1_v5_gn_6_42101 Lactuca sativa HOM05D004020 ORTHO05D004735 0.0e+00 1204.5 1139 58.8
EL10Ac9g20998 Beta vulgaris HOM05D004020 ORTHO05D004735 0.0e+00 1200.3 1157 57.6
ECA238G2607 Erigeron canadensis HOM05D004020 ORTHO05D004735 0.0e+00 1197.2 1073 60.7
HanXRQChr02g0055251 Helianthus annuus HOM05D004020 ORTHO05D004735 0.0e+00 1161.0 1090 58.1
CDE08G1223 Ceratophyllum demersum HOM05D004020 ORTHO05D004735 0.0e+00 1152.1 1087 58.3
arahy.Tifrunner.gnm1.ann1.PN7A9Z Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1132.5 935 64.8
AL4G12830 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 0.0e+00 1130.2 893 73.5
arahy.Tifrunner.gnm1.ann1.B084HG Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1128.6 936 64.6
Eucgr.B03912 Eucalyptus grandis HOM05D004020 ORTHO05D004735 0.0e+00 1122.5 1019 61.8
ATR1158G033 Amborella trichopoda HOM05D004020 ORTHO05D004735 0.0e+00 1120.9 1080 57.4
Oeu007301.5 Olea europaea HOM05D004020 ORTHO05D004735 0.0e+00 1105.1 1298 50.9
Zm00001eb022740 Zea mays HOM05D004020 ORTHO05D004735 0.0e+00 1097.4 1089 56.3
Lsat_1_v5_gn_2_99000 Lactuca sativa HOM05D004020 ORTHO05D004735 0.0e+00 1093.6 1141 55.7
Os10g0546300 Oryza sativa ssp. japonica HOM05D004020 ORTHO05D004735 0.0e+00 1087.0 1082 55.1
SGA_v2.0_scaffold27G11582 Striga asiatica HOM05D004020 ORTHO05D004735 8.4e-309 1063.9 1365 48.1
Hund07762 Selenicereus undatus HOM05D004020 ORTHO05D004735 8.7e-298 1027.3 1064 54.2
CANSAT64G0934 Cannabis sativa HOM05D004020 ORTHO05D004735 5.3e-295 1018.1 1037 57.2
ClCG01G012850 Citrullus lanatus HOM05D004020 ORTHO05D004735 1.2e-291 1006.9 963 60.1
AUR62024038 Chenopodium quinoa HOM05D004020 ORTHO05D004735 4.3e-289 998.4 1132 52.4
MBI18_g10967_MAGBIO Magnolia biondii HOM05D004020 ORTHO05D004735 4.5e-286 988.4 1104 51.4
Hund00854 Selenicereus undatus HOM05D004020 ORTHO05D004735 1.7e-264 916.8 1026 53.8
DCAR_031639 Daucus carota HOM05D004020 ORTHO05D004735 6.3e-264 914.8 936 55.8
Peaxi162Scf00150g00916 Petunia axillaris HOM05D004020 ORTHO05D004735 2.5e-252 876.3 886 58.2
AUR62041305 Chenopodium quinoa HOM05D004020 ORTHO05D004735 3.6e-251 872.5 1042 50.5
Mapoly0001s0255 Marchantia polymorpha HOM05D004020 ORTHO05D004735 3.0e-221 773.1 1129 41.5
AagrBONN_evm.TU.Sc2ySwM_340.402 Anthoceros agrestis HOM05D004020 ORTHO05D004735 2.8e-219 766.5 1135 41.1
SMO118G0476 Selaginella moellendorffii HOM05D004020 ORTHO05D004735 7.8e-214 748.4 1093 41.3
Pp3c16_8720 Physcomitrium patens HOM05D004020 ORTHO05D004735 6.6e-213 745.3 1120 41.3
Pp3c5_16860 Physcomitrium patens HOM05D004020 ORTHO05D004735 2.5e-212 743.4 1122 41.4
Oeu008367.3 Olea europaea HOM05D004020 ORTHO05D004735 1.1e-204 718.0 889 51.1
Ah.01g015940 Amaranthus hybridus HOM05D004020 ORTHO05D004735 1.9e-204 717.2 695 57.0
Lj2C1000T5 Lonicera japonica HOM05D004020 ORTHO05D004735 8.4e-192 675.2 804 51.4
Dinv12567 Davidia involucrata HOM05D004020 ORTHO05D004735 2.3e-189 667.2 980 45.0
AagrBONN_evm.TU.Sc2ySwM_117.107 Anthoceros agrestis HOM05D004020 ORTHO05D004735 6.2e-187 659.1 1044 37.9
Lj2A1002G14 Lonicera japonica HOM05D004020 ORTHO05D004735 8.7e-181 638.6 645 54.6
Gohir.A07G106066 Gossypium hirsutum HOM05D004020 ORTHO05D004735 2.2e-176 624.0 527 62.6
SalBow6G5048 Salvia bowleyana HOM05D004020 ORTHO05D004735 1.1e-172 611.7 526 62.0
Gorai.001G118200 Gossypium raimondii HOM05D004020 ORTHO05D004735 2.4e-162 577.4 427 71.4
Gohir.A07G106132 Gossypium hirsutum HOM05D004020 ORTHO05D004735 1.2e-161 575.1 434 70.5
Haze_23514 Corylus avellana HOM05D004020 ORTHO05D004735 5.5e-159 566.2 655 53.3
unitig_746.g26602 Utricularia gibba HOM05D004020 ORTHO05D004735 1.8e-154 551.2 517 56.1
Cpa.g.sc47.20 Carica papaya HOM05D004020 ORTHO05D004735 8.8e-125 452.6 486 58.4
Lj2A1002G13 Lonicera japonica HOM05D004020 ORTHO05D004735 3.7e-115 420.6 409 58.9
HPP92_022569 Vanilla planifolia HOM05D004020 ORTHO05D004735 3.4e-108 397.5 330 64.2
SEGI_08231 Sequoiadendron giganteum HOM05D004020 ORTHO05D004735 6.0e-105 386.7 660 39.2
Peaxi162Scf00150g00917 Petunia axillaris HOM05D004020 ORTHO05D004735 1.1e-103 382.5 227 79.3
CBR_g49688 Chara braunii HOM05D004020 ORTHO05D004735 2.7e-97 361.3 818 33.6
unitig_746.g26604 Utricularia gibba HOM05D004020 ORTHO05D004735 3.9e-96 357.5 364 55.8
CANSAT64G1975 Cannabis sativa HOM05D004020 ORTHO05D004735 5.1e-88 330.5 189 79.4
QL01p014670 Quercus lobata HOM05D004020 ORTHO05D004735 2.5e-87 328.2 351 49.9
C06p19250 Brassica napus HOM05D004020 ORTHO05D004735 4.3e-79 300.8 246 68.7
MCO09G744 Micromonas commoda HOM05D004020 ORTHO05D004735 1.1e-77 296.2 1097 25.4
Cpa.g.sc47.22 Carica papaya HOM05D004020 ORTHO05D004735 3.1e-77 294.7 225 72.4
C06p24240 Brassica napus HOM05D004020 ORTHO05D004735 3.4e-76 291.2 262 64.5
Rhsim04G0218400 Rhododendron simsii HOM05D004020 ORTHO05D004735 2.4e-69 268.5 382 45.0
PRCOL_00006567 Prasinoderma coloniale HOM05D004020 ORTHO05D004735 3.1e-69 268.1 1234 23.2
Hma1.2p1_1225F.1_g268540 Hydrangea macrophylla HOM05D004020 ORTHO05D004735 3.5e-65 254.6 140 85.0
Haze_23513 Corylus avellana HOM05D004020 ORTHO05D004735 6.7e-64 250.4 193 67.4
arahy.Tifrunner.gnm1.ann1.FLM5Q5 Arachis hypogaea HOM05D004020 ORTHO05D004735 2.5e-63 248.4 198 61.6
HPP92_022573 Vanilla planifolia HOM05D004020 ORTHO05D004735 8.2e-62 243.4 143 80.4
Haze_23515 Corylus avellana HOM05D004020 ORTHO05D004735 2.4e-61 241.9 140 81.4
SHI06178 Sapria himalayana HOM05D004020 ORTHO05D004735 1.2e-60 239.6 546 33.7
AL580U10010 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 1.8e-56 225.7 141 85.8
DCAR_031637 Daucus carota HOM05D004020 ORTHO05D004735 4.2e-50 204.5 120 80.0
Lj2C1000T6 Lonicera japonica HOM05D004020 ORTHO05D004735 9.4e-50 203.4 122 77.9
TAR633G2769 Trochodendron aralioides HOM05D004020 ORTHO05D004735 4.6e-49 201.1 119 79.0
Pp3c25_5430 Physcomitrium patens HOM05D004020 ORTHO05D004735 1.9e-47 195.7 537 33.5
SHI06179 Sapria himalayana HOM05D004020 ORTHO05D004735 8.8e-40 170.2 121 66.9
BcaC01g02437 Brassica carinata HOM05D004020 ORTHO05D004735 1.5e-39 169.5 150 62.7
Cre10.g443350 Chlamydomonas reinhardtii HOM05D004020 ORTHO05D004735 2.0e-39 169.1 1151 21.6
C03p65310 Brassica napus HOM05D004020 ORTHO05D004735 2.6e-39 168.7 134 69.4
FAN11G0203 Fragaria x ananassa HOM05D004020 ORTHO05D004735 3.7e-38 164.9 171 57.9
FAN21G0688 Fragaria x ananassa HOM05D004020 ORTHO05D004735 3.7e-38 164.9 171 57.9
Haze_23512 Corylus avellana HOM05D004020 ORTHO05D004735 7.0e-37 160.6 140 65.7
Cpa.g.sc47.18 Carica papaya HOM05D004020 ORTHO05D004735 5.0e-35 154.5 87 82.8
CANSAT64G1073 Cannabis sativa HOM05D004020 ORTHO05D004735 7.2e-34 150.6 82 82.9
ClCG01G012880 Citrullus lanatus HOM05D004020 ORTHO05D004735 1.2e-33 149.8 82 84.1
Rhsim04G0145900 Rhododendron simsii HOM05D000045 ORTHO05D003665 2.0e-31 142.5 129 59.7
TAR476G0003 Trochodendron aralioides HOM05D004020 ORTHO05D004735 2.0e-31 142.5 140 61.4
unitig_746.g26603 Utricularia gibba HOM05D004020 ORTHO05D004735 9.7e-31 140.2 177 45.8
arahy.Tifrunner.gnm1.ann1.LCV131 Arachis hypogaea HOM05D004020 ORTHO05D004735 2.6e-28 132.1 117 57.3
MD01G1172900 Malus domestica HOM05D004020 ORTHO05D004735 7.7e-28 130.6 137 57.7
Nitab4.5_0027393g0010 Nicotiana tabacum HOM05D004020 ORTHO05D004735 6.1e-25 120.9 196 45.9
SEGI_13700 Sequoiadendron giganteum HOM05D004020 ORTHO05D004735 8.8e-24 117.1 113 56.6
Nitab4.5_0005230g0050 Nicotiana tabacum HOM05D004020 ORTHO05D004735 5.3e-21 107.8 161 45.3
Zm00001eb064060 Zea mays HOM05D002996 ORTHO05D003536 7.0e-21 107.5 118 53.4
SHI06176 Sapria himalayana HOM05D004020 ORTHO05D004735 1.0e-19 103.6 85 57.6
SHI06174 Sapria himalayana HOM05D004020 ORTHO05D004735 4.2e-18 98.2 95 54.7
FAN16G3550 Fragaria x ananassa HOM05D004020 ORTHO05D004735 7.2e-18 97.4 91 61.5
Zm00001eb302500 Zea mays HOM05D004020 ORTHO05D004735 9.4e-18 97.1 125 52.8
HPP92_022568 Vanilla planifolia HOM05D004020 ORTHO05D004735 6.1e-17 94.4 102 49.0
Zm00001eb218380 Zea mays HOM05D002996 ORTHO05D003536 3.4e-15 88.6 87 54.0
Lsat_1_v5_gn_8_150800 Lactuca sativa HOM05D003321 ORTHO05D033839 7.7e-12 77.4 80 53.8
Nitab4.5_0011593g0020 Nicotiana tabacum HOM05D004020 ORTHO05D004735 2.8e-06 58.9 43 60.5
SHI06173 Sapria himalayana HOM05D004020 ORTHO05D003975 4.9e-06 58.2 59 52.5
SHI06177 Sapria himalayana HOM05D004020 ORTHO05D004735 6.3e-06 57.8 45 60.0


User provided reference genes

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