Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g04840 Brassica carinata HOM05D004653 ORTHO05D006221 1.4e-303 1045.4 514 100.0
BolC3t15652H Brassica oleracea HOM05D004653 ORTHO05D006221 4.3e-300 1033.9 514 98.8
C03p33300 Brassica napus HOM05D004653 ORTHO05D006221 9.5e-300 1032.7 514 98.6
BraA03t11972Z Brassica rapa HOM05D004653 ORTHO05D006221 5.2e-290 1000.3 518 96.3
A03p27590 Brassica napus HOM05D004653 ORTHO05D006221 2.6e-289 998.0 519 96.5
BcaB01g02929 Brassica carinata HOM05D004653 ORTHO05D006221 2.7e-270 934.9 520 90.6
Sp6g11760 Schrenkiella parvula HOM05D004653 ORTHO05D006221 1.2e-267 926.0 524 88.5
Thhalv10013217m.g Eutrema salsugineum HOM05D004653 ORTHO05D006221 2.2e-264 915.2 535 86.4
AT5G49970 Arabidopsis thaliana HOM05D004653 ORTHO05D006221 3.6e-259 897.9 532 85.7
Carub.0008s0987 Capsella rubella HOM05D004653 ORTHO05D006221 4.9e-256 887.5 539 83.9
AL8G23940 Arabidopsis lyrata HOM05D004653 ORTHO05D006221 1.1e-255 886.3 537 84.4
CARHR258740 Cardamine hirsuta HOM05D004653 ORTHO05D006221 6.7e-253 877.1 524 84.4
THA.LOC104799811 Tarenaya hassleriana HOM05D004653 ORTHO05D006221 4.9e-240 834.3 476 84.2
Aa31sc34G110 Aethionema arabicum HOM05D004653 ORTHO05D006221 1.4e-239 832.8 530 79.8
COL.COLO4_11961 Corchorus olitorius HOM05D004653 ORTHO05D006221 1.7e-219 766.1 484 75.2
Ciclev10000790m.g Citrus clementina HOM05D004653 ORTHO05D006221 3.7e-219 765.0 464 78.9
PSO675G8871 Papaver somniferum HOM05D004653 ORTHO05D006221 3.7e-219 765.0 469 77.8
PSO541G1602 Papaver somniferum HOM05D004653 ORTHO05D006221 6.3e-219 764.2 469 77.8
arahy.Tifrunner.gnm1.ann1.QAT0QL Arachis hypogaea HOM05D004653 ORTHO05D006221 1.4e-218 763.1 483 75.2
Atru.chr13.1058 Acer truncatum HOM05D004653 ORTHO05D006221 1.2e-217 760.0 469 77.8
GSVIVG01009125001 Vitis vinifera HOM05D004653 ORTHO05D006221 1.2e-217 760.0 491 74.3
Gorai.009G279800 Gossypium raimondii HOM05D004653 ORTHO05D006221 1.5e-217 759.6 466 76.8
Lj1g0013887 Lotus japonicus HOM05D004653 ORTHO05D006221 1.5e-217 759.6 475 75.2
Prupe.1G526800 Prunus persica HOM05D004653 ORTHO05D006221 4.5e-217 758.1 471 77.3
Medtr3g100890 Medicago truncatula HOM05D004653 ORTHO05D006221 1.3e-216 756.5 480 75.0
Cfa013708 Carpinus fangiana HOM05D004653 ORTHO05D006221 2.2e-216 755.7 460 78.5
MBI06_g18790_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D006221 2.2e-216 755.7 516 71.5
Thecc.08G066400 Theobroma cacao HOM05D004653 ORTHO05D006221 5.0e-216 754.6 466 76.4
Nn1g05497 Nelumbo nucifera HOM05D004653 ORTHO05D006221 1.4e-215 753.1 474 75.9
Gohir.D05G267700 Gossypium hirsutum HOM05D004653 ORTHO05D006221 1.9e-215 752.7 466 76.2
MD15G1380600 Malus domestica HOM05D004653 ORTHO05D006221 2.5e-215 752.3 503 73.4
TPR.G26053 Trifolium pratense HOM05D004653 ORTHO05D006221 3.2e-215 751.9 480 74.6
TWI56G0982 Tripterygium wilfordii HOM05D004653 ORTHO05D006221 5.5e-215 751.1 503 71.8
TAR376G1013 Trochodendron aralioides HOM05D004653 ORTHO05D006221 5.5e-215 751.1 540 68.9
CANSAT11G2183 Cannabis sativa HOM05D004653 ORTHO05D006221 7.2e-215 750.7 492 74.4
MD08G1191800 Malus domestica HOM05D004653 ORTHO05D006221 7.2e-215 750.7 479 75.2
Potri.002G102600 Populus trichocarpa HOM05D004653 ORTHO05D006221 9.4e-215 750.4 465 76.1
Ciclev10001057m.g Citrus clementina HOM05D004653 ORTHO05D006221 1.2e-214 750.0 464 77.4
Cpa.g.sc36.204 Carica papaya HOM05D004653 ORTHO05D006221 2.7e-214 748.8 452 79.2
FAN04G0673 Fragaria x ananassa HOM05D004653 ORTHO05D006221 2.7e-214 748.8 475 74.7
Phvul.009G037700 Phaseolus vulgaris HOM05D004653 ORTHO05D006221 3.6e-214 748.4 460 76.7
Psat5g045400 Pisum sativum HOM05D004653 ORTHO05D006221 1.0e-213 746.9 479 75.2
Migut.I00061 Erythranthe guttata HOM05D004653 ORTHO05D006221 1.4e-213 746.5 472 75.4
RcHm_v2.0_Chr7g0237681 Rosa chinensis HOM05D004653 ORTHO05D006221 1.4e-213 746.5 514 71.0
PGSC0003DMG401024581 Solanum tuberosum HOM05D004653 ORTHO05D006221 1.4e-213 746.5 511 70.1
FAN18G1441 Fragaria x ananassa HOM05D004653 ORTHO05D006221 1.8e-213 746.1 475 74.7
FvH4_5g35940 Fragaria vesca HOM05D004653 ORTHO05D006221 5.2e-213 744.6 475 74.5
CiPaw.07G169200 Carya illinoinensis HOM05D004653 ORTHO05D006221 4.4e-212 741.5 465 75.5
FAN08G1395 Fragaria x ananassa HOM05D004653 ORTHO05D006221 4.4e-212 741.5 475 74.1
Solyc03g113780.3 Solanum lycopersicum HOM05D004653 ORTHO05D006221 4.4e-212 741.5 477 72.5
SGA_v2.0_scaffold25G10868 Striga asiatica HOM05D004653 ORTHO05D006221 4.4e-212 741.5 466 75.5
SalBow5G1317 Salvia bowleyana HOM05D004653 ORTHO05D006221 7.4e-212 740.7 473 74.4
VMungo1309G1466 Vigna mungo HOM05D004653 ORTHO05D006221 7.4e-212 740.7 476 74.6
Aqoxy6G01474 Aquilegia oxysepala HOM05D004653 ORTHO05D006221 1.7e-211 739.6 514 72.0
QL09p016947 Quercus lobata HOM05D004653 ORTHO05D006221 1.7e-211 739.6 528 69.7
Hma1.2p1_0961F.1_g241730 Hydrangea macrophylla HOM05D004653 ORTHO05D006221 2.8e-211 738.8 469 74.8
Lalb_Chr23g0270281 Lupinus albus HOM05D004653 ORTHO05D006221 3.7e-211 738.4 460 75.4
Sopen03g032830 Solanum pennellii HOM05D004653 ORTHO05D006221 3.7e-211 738.4 477 72.3
ClCG11G014410 Citrullus lanatus HOM05D004653 ORTHO05D006221 1.1e-210 736.9 533 69.0
Manes.02G147500 Manihot esculenta HOM05D004653 ORTHO05D006221 1.1e-210 736.9 486 72.4
Manes.18G062000 Manihot esculenta HOM05D004653 ORTHO05D006221 1.1e-210 736.9 472 74.2
MELO3C003541.2 Cucumis melo HOM05D004653 ORTHO05D006221 1.4e-210 736.5 481 73.6
Actinidia30803 Actinidia chinensis HOM05D004653 ORTHO05D006221 1.8e-210 736.1 469 74.8
Lalb_Chr11g0065151 Lupinus albus HOM05D004653 ORTHO05D006221 7.0e-210 734.2 460 74.8
Sed0021217 Sechium edule HOM05D004653 ORTHO05D006221 7.0e-210 734.2 465 74.8
Eucgr.F02123 Eucalyptus grandis HOM05D004653 ORTHO05D006221 9.1e-210 733.8 463 76.2
CDE05G0914 Ceratophyllum demersum HOM05D004653 ORTHO05D006221 1.2e-209 733.4 475 74.5
CsaV3_3G047810 Cucumis sativus L. HOM05D004653 ORTHO05D006221 1.6e-209 733.0 465 74.6
CSS0037453 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 2.6e-209 732.3 465 73.8
Hund26999 Selenicereus undatus HOM05D004653 ORTHO05D006221 2.6e-209 732.3 553 67.5
Ca_15984_v3 Cicer arietinum L. HOM05D004653 ORTHO05D006221 4.5e-209 731.5 463 74.3
MSTRG.23086 Avicennia marina HOM05D004653 ORTHO05D006221 7.7e-209 730.7 463 75.2
PGR031G0949 Punica granatum HOM05D004653 ORTHO05D006221 2.2e-208 729.2 534 69.1
CAN.G853.18 Capsicum annuum HOM05D004653 ORTHO05D006221 2.9e-208 728.8 477 72.1
Lj4C92G16 Lonicera japonica HOM05D004653 ORTHO05D006221 5.0e-208 728.0 469 73.8
arahy.Tifrunner.gnm1.ann1.Y1WP0G Arachis hypogaea HOM05D004653 ORTHO05D006221 1.9e-207 726.1 483 72.7
Haze_22352 Corylus avellana HOM05D004653 ORTHO05D006221 2.1e-206 722.6 568 64.8
FAN13G0646 Fragaria x ananassa HOM05D004653 ORTHO05D006221 3.6e-206 721.8 467 73.2
Os10g0377800 Oryza sativa ssp. japonica HOM05D004653 ORTHO05D006221 1.4e-205 719.9 458 75.1
TWI36G0595 Tripterygium wilfordii HOM05D004653 ORTHO05D006221 1.8e-205 719.5 466 74.2
AUR62019003 Chenopodium quinoa HOM05D004653 ORTHO05D006221 2.3e-205 719.2 476 73.5
AUR62027845 Chenopodium quinoa HOM05D004653 ORTHO05D006221 2.3e-205 719.2 525 68.6
HanXRQChr02g0047071 Helianthus annuus HOM05D004653 ORTHO05D006221 2.3e-205 719.2 477 71.9
EL10Ac1g01097 Beta vulgaris HOM05D004653 ORTHO05D006221 5.2e-205 718.0 505 70.5
ATR0022G001 Amborella trichopoda HOM05D004653 ORTHO05D006221 1.5e-204 716.5 527 66.4
CSS0025013 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 4.4e-204 714.9 469 72.1
TAR628G1442 Trochodendron aralioides HOM05D004653 ORTHO05D006221 5.7e-204 714.5 469 72.9
Sabra02G0080400 Salix brachista HOM05D004653 ORTHO05D006221 1.3e-203 713.4 615 59.2
Gohir.A05G265600 Gossypium hirsutum HOM05D004653 ORTHO05D006221 1.1e-202 710.3 459 73.6
Rhsim06G0074900 Rhododendron simsii HOM05D004653 ORTHO05D006221 1.5e-199 699.9 477 69.8
ECA247G2604 Erigeron canadensis HOM05D004653 ORTHO05D006221 1.2e-198 696.8 457 71.6
DCAR_012873 Daucus carota HOM05D004653 ORTHO05D006221 1.8e-197 693.0 488 67.8
HPP92_004087 Vanilla planifolia HOM05D004653 ORTHO05D006221 1.2e-196 690.3 468 70.1
Lsat_1_v5_gn_1_2401 Lactuca sativa HOM05D004653 ORTHO05D006221 9.8e-196 687.2 447 71.6
HPP92_004102 Vanilla planifolia HOM05D004653 ORTHO05D006221 4.8e-195 684.9 512 65.4
Cc04_g13590 Coffea canephora HOM05D004653 ORTHO05D006221 1.9e-191 672.9 436 72.7
Glyma.04G093600 Glycine max HOM05D004653 ORTHO05D006221 2.5e-191 672.5 410 77.8
vmacro22331 Vaccinium macrocarpon HOM05D004653 ORTHO05D006221 2.5e-191 672.5 602 58.0
Nitab4.5_0000642g0300 Nicotiana tabacum HOM05D004653 ORTHO05D006221 2.8e-190 669.1 513 64.5
Sc01g0000970 Simmondsia chinensis HOM05D004653 ORTHO05D006221 1.8e-189 666.4 421 74.3
Sc01g0000980 Simmondsia chinensis HOM05D004653 ORTHO05D006221 3.4e-188 662.1 421 74.1
unitig_26.g9628 Utricularia gibba HOM05D004653 ORTHO05D006221 2.2e-187 659.4 458 68.6
Mapoly0107s0030 Marchantia polymorpha HOM05D004653 ORTHO05D006221 2.5e-183 646.0 481 64.4
MBI02_g18292_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D006221 3.4e-180 635.6 469 64.6
Dinv44830 Davidia involucrata HOM05D004653 ORTHO05D006221 9.8e-180 634.0 410 74.6
SMO356G0546 Selaginella moellendorffii HOM05D004653 ORTHO05D006221 1.6e-177 626.7 448 64.3
Oeu042971.1 Olea europaea HOM05D004653 ORTHO05D006221 7.8e-177 624.4 442 66.5
Pp3c2_19610 Physcomitrium patens HOM05D004653 ORTHO05D006221 2.1e-174 616.3 463 63.1
Oeu042973.1 Olea europaea HOM05D004653 ORTHO05D006221 5.2e-173 611.7 421 68.2
Cc07_g19270 Coffea canephora HOM05D004653 ORTHO05D006221 5.8e-172 608.2 447 65.5
CAN.G853.20 Capsicum annuum HOM05D004653 ORTHO05D006221 7.5e-172 607.8 464 61.9
Sopen03g032820 Solanum pennellii HOM05D004653 ORTHO05D006221 2.8e-166 589.3 464 60.8
Solyc03g113770.3 Solanum lycopersicum HOM05D004653 ORTHO05D006221 2.6e-164 582.8 464 60.3
Migut.I00062 Erythranthe guttata HOM05D004653 ORTHO05D006221 4.1e-162 575.5 457 60.0
SGA_v2.0_scaffold467G52033 Striga asiatica HOM05D004653 ORTHO05D006221 4.1e-162 575.5 449 61.7
Nitab4.5_0007586g0050 Nicotiana tabacum HOM05D004653 ORTHO05D006221 1.9e-159 566.6 475 59.4
Oeu018527.2 Olea europaea HOM05D004653 ORTHO05D006221 1.6e-158 563.5 465 62.4
SalBow5G2478 Salvia bowleyana HOM05D004653 ORTHO05D006221 1.8e-157 560.1 452 59.1
CSS0007986 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 2.6e-156 556.2 356 73.6
AagrBONN_evm.TU.Sc2ySwM_368.1227 Anthoceros agrestis HOM05D004653 ORTHO05D006221 1.7e-155 553.5 452 59.7
Peaxi162Scf00017g00233 Petunia axillaris HOM05D004653 ORTHO05D006221 1.0e-152 544.3 395 65.8
MSTRG.23084 Avicennia marina HOM05D004653 ORTHO05D006221 8.7e-136 488.0 352 66.5
Nitab4.5_0024258g0010 Nicotiana tabacum HOM05D004653 ORTHO05D006221 3.3e-135 486.1 379 63.6
Cre08.g378200 Chlamydomonas reinhardtii HOM05D004653 ORTHO05D006221 3.0e-128 463.0 508 49.8
Zm00001eb027880 Zea mays HOM05D004653 ORTHO05D006221 3.4e-116 422.9 268 75.0
MBI17_g06166_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D006221 3.3e-111 406.4 316 65.2
Lalb_Chr23g0270171 Lupinus albus HOM05D004653 ORTHO05D006221 4.3e-111 406.0 255 74.1
PGSC0003DMG400024580 Solanum tuberosum HOM05D004653 ORTHO05D006221 7.7e-108 395.2 421 48.0
CSS0017284 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 6.1e-97 359.0 261 65.5
Actinidia10360 Actinidia chinensis HOM05D004653 ORTHO05D006221 1.4e-93 347.8 361 54.0
CBR_g24311 Chara braunii HOM05D000019 ORTHO05D000353 1.1e-90 338.2 262 59.2
Glyma.06G095500 Glycine max HOM05D004653 ORTHO05D006221 1.8e-85 320.9 218 74.3
SEGI_17033 Sequoiadendron giganteum HOM05D004653 ORTHO05D006221 8.5e-83 312.0 214 64.5
MCO02G367 Micromonas commoda HOM05D004653 ORTHO05D006221 7.2e-82 308.9 233 61.8
Duzib116G0761 Durio zibethinus HOM05D004653 ORTHO05D006221 6.8e-64 249.2 202 64.9
CBR_g24313 Chara braunii HOM05D004653 ORTHO05D006221 6.4e-54 216.1 162 63.6
Lalb_Chr23g0270161 Lupinus albus HOM05D004653 ORTHO05D006221 7.3e-50 202.6 144 67.4
Nitab4.5_0005655g0030 Nicotiana tabacum HOM05D004653 ORTHO05D006221 6.8e-40 169.5 113 69.9
Cc06_g21090 Coffea canephora HOM05D004653 ORTHO05D006221 1.2e-39 168.7 101 82.2
Glyma.06G095451 Glycine max HOM05D004653 ORTHO05D006221 7.1e-37 159.5 178 50.6
Dinv42645 Davidia involucrata HOM05D004653 ORTHO05D006221 2.7e-36 157.5 156 55.8
SEGI_12419 Sequoiadendron giganteum HOM05D004653 ORTHO05D006221 6.6e-35 152.9 91 73.6
Potri.005G159500 Populus trichocarpa HOM05D004653 ORTHO05D006221 5.8e-31 139.8 114 59.6
CSS0010132 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 1.6e-28 131.7 129 51.9
Dinv42644 Davidia involucrata HOM05D004653 ORTHO05D006221 3.4e-15 87.4 111 47.7
PRCOL_00006962 Prasinoderma coloniale HOM05D004653 ORTHO05D006221 4.5e-15 87.0 57 61.4
BcaB08g35370 Brassica carinata HOM05D004653 ORTHO05D006221 4.9e-14 83.6 57 73.7
Gohir.A06G032660 Gossypium hirsutum HOM05D004653 ORTHO05D019566 6.5e-14 83.2 49 83.7
Gorai.010G036500 Gossypium raimondii HOM05D004653 ORTHO05D019566 6.5e-14 83.2 49 83.7
Lalb_Chr23g0270181 Lupinus albus HOM05D004653 ORTHO05D019566 4.6e-12 77.0 57 71.9
CSS0005277 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D019566 2.4e-08 64.7 65 56.9
ATR1171G001 Amborella trichopoda HOM05D004653 ORTHO05D019566 7.6e-07 59.7 96 39.6


User provided reference genes

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