Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g04376 Brassica carinata HOM05D004899 ORTHO05D006580 1.6e-214 749.2 390 100.0
C03p40810 Brassica napus HOM05D004899 ORTHO05D006580 1.6e-214 749.2 390 100.0
BolC3t16350H Brassica oleracea HOM05D004899 ORTHO05D006580 5.1e-213 744.2 390 99.0
A03p33610 Brassica napus HOM05D004899 ORTHO05D006580 1.5e-212 742.7 390 98.7
BraA03t12536Z Brassica rapa HOM05D004899 ORTHO05D006580 6.9e-210 733.8 395 97.0
Sp3g03310 Schrenkiella parvula HOM05D004899 ORTHO05D006580 1.0e-200 703.4 394 93.1
Thhalv10020878m.g Eutrema salsugineum HOM05D004899 ORTHO05D006580 4.6e-198 694.5 396 92.2
Carub.0003s0362 Capsella rubella HOM05D004899 ORTHO05D006580 6.1e-198 694.1 394 91.9
AL3G14410 Arabidopsis lyrata HOM05D004899 ORTHO05D006580 1.4e-197 693.0 394 91.9
AT3G04460 Arabidopsis thaliana HOM05D004899 ORTHO05D006580 1.8e-197 692.6 394 91.9
A05p43040 Brassica napus HOM05D004899 ORTHO05D006580 1.5e-193 679.5 390 87.2
BcaB04g19333 Brassica carinata HOM05D004899 ORTHO05D006580 2.6e-193 678.7 379 94.5
Aa31LG5G14890 Aethionema arabicum HOM05D004899 ORTHO05D006580 7.4e-188 660.6 394 87.1
THA.LOC104820770 Tarenaya hassleriana HOM05D004899 ORTHO05D006580 1.6e-182 642.9 395 85.1
BcaC05g30197 Brassica carinata HOM05D004899 ORTHO05D006580 2.9e-176 622.1 399 81.7
BcaC05g29943 Brassica carinata HOM05D004899 ORTHO05D006580 7.0e-162 574.3 390 77.4
ECA233G1223 Erigeron canadensis HOM05D004899 ORTHO05D006580 4.9e-155 551.6 392 72.7
Thecc.05G269900 Theobroma cacao HOM05D004899 ORTHO05D006580 5.4e-154 548.1 394 72.1
Potri.013G047800 Populus trichocarpa HOM05D004899 ORTHO05D006580 1.2e-153 547.0 392 71.4
Potri.019G020000 Populus trichocarpa HOM05D004899 ORTHO05D006580 1.6e-153 546.6 393 72.0
Duzib106G1539 Durio zibethinus HOM05D004899 ORTHO05D006580 2.0e-153 546.2 394 71.1
Gorai.007G274800 Gossypium raimondii HOM05D004899 ORTHO05D006580 4.6e-153 545.0 392 72.2
Gohir.D11G256500 Gossypium hirsutum HOM05D004899 ORTHO05D006580 1.0e-152 543.9 392 71.9
C05p62800 Brassica napus HOM05D004899 ORTHO05D006580 2.9e-152 542.3 377 78.2
Gohir.A11G246300 Gossypium hirsutum HOM05D004899 ORTHO05D006580 5.0e-152 541.6 392 71.2
Hund22166 Selenicereus undatus HOM05D004899 ORTHO05D006580 3.3e-151 538.9 392 70.7
Eucgr.B02154 Eucalyptus grandis HOM05D004899 ORTHO05D006580 4.3e-151 538.5 392 71.7
HanXRQChr08g0216941 Helianthus annuus HOM05D004899 ORTHO05D006580 5.6e-151 538.1 392 70.9
Manes.08G140200 Manihot esculenta HOM05D004899 ORTHO05D006580 1.2e-150 537.0 395 71.9
Sc20g0000690 Simmondsia chinensis HOM05D004899 ORTHO05D006580 6.1e-150 534.6 392 70.7
FvH4_6g01740 Fragaria vesca HOM05D004899 ORTHO05D006580 1.8e-149 533.1 395 72.7
CSS0003371 Camellia sinensis var. sinensis HOM05D004899 ORTHO05D006580 8.9e-149 530.8 394 70.6
MD04G1231200 Malus domestica HOM05D004899 ORTHO05D006580 1.2e-148 530.4 396 71.0
Prupe.6G350900 Prunus persica HOM05D004899 ORTHO05D006580 1.2e-148 530.4 398 71.1
TWI36G0265 Tripterygium wilfordii HOM05D004899 ORTHO05D006580 1.2e-148 530.4 392 70.7
EL10Ac4g08990 Beta vulgaris HOM05D004899 ORTHO05D006580 2.0e-148 529.6 392 68.6
CiPaw.08G118600 Carya illinoinensis HOM05D004899 ORTHO05D006580 2.0e-148 529.6 393 71.0
FAN14G2287 Fragaria x ananassa HOM05D004899 ORTHO05D006580 2.0e-148 529.6 395 72.2
FAN14G4075 Fragaria x ananassa HOM05D004899 ORTHO05D006580 2.0e-148 529.6 395 72.2
FAN05G0331 Fragaria x ananassa HOM05D004899 ORTHO05D006580 4.4e-148 528.5 395 71.9
FAN05G3121 Fragaria x ananassa HOM05D004899 ORTHO05D006580 4.4e-148 528.5 395 71.9
RcHm_v2.0_Chr3g0449481 Rosa chinensis HOM05D004899 ORTHO05D006580 5.8e-148 528.1 395 71.1
Dinv06242 Davidia involucrata HOM05D004899 ORTHO05D006580 7.5e-148 527.7 394 69.8
FAN09G4068 Fragaria x ananassa HOM05D004899 ORTHO05D006580 1.3e-147 526.9 395 71.6
Peaxi162Scf00015g02911 Petunia axillaris HOM05D004899 ORTHO05D006580 8.3e-147 524.2 394 70.6
Lsat_1_v5_gn_8_25181 Lactuca sativa HOM05D004899 ORTHO05D006580 1.4e-146 523.5 392 70.4
PGSC0003DMG400023503 Solanum tuberosum HOM05D004899 ORTHO05D006580 2.4e-146 522.7 394 70.6
PGR142G4366 Punica granatum HOM05D004899 ORTHO05D006580 7.0e-146 521.2 393 70.7
Rhsim09G0133700 Rhododendron simsii HOM05D004899 ORTHO05D006580 2.0e-145 519.6 394 69.0
Actinidia34758 Actinidia chinensis HOM05D004899 ORTHO05D006580 2.7e-145 519.2 394 69.3
QL03p029772 Quercus lobata HOM05D004899 ORTHO05D006580 2.7e-145 519.2 409 66.7
Solyc05g054950.2 Solanum lycopersicum HOM05D004899 ORTHO05D006580 2.7e-145 519.2 394 70.1
CAN.G1465.15 Capsicum annuum HOM05D004899 ORTHO05D006580 3.5e-145 518.8 395 70.6
Sabra19G0032200 Salix brachista HOM05D004899 ORTHO05D006580 4.6e-145 518.5 393 69.7
CANSAT54G0581 Cannabis sativa HOM05D004899 ORTHO05D006580 1.0e-144 517.3 397 69.8
COL.COLO4_15501 Corchorus olitorius HOM05D004899 ORTHO05D006580 1.3e-144 516.9 376 71.0
GSVIVG01023441001 Vitis vinifera HOM05D004899 ORTHO05D006580 2.3e-144 516.2 394 68.3
Sopen05g033410 Solanum pennellii HOM05D004899 ORTHO05D006580 3.0e-144 515.8 394 69.8
ClCG11G010490 Citrullus lanatus HOM05D004899 ORTHO05D006580 5.0e-144 515.0 392 67.3
MELO3C008694.2 Cucumis melo HOM05D004899 ORTHO05D006580 6.6e-144 514.6 394 67.5
MSTRG.8229 Avicennia marina HOM05D004899 ORTHO05D006580 8.6e-144 514.2 394 68.3
CsaV3_2G009880 Cucumis sativus L. HOM05D004899 ORTHO05D006580 8.6e-144 514.2 394 67.5
Migut.F01538 Erythranthe guttata HOM05D004899 ORTHO05D006580 1.1e-143 513.8 395 68.9
Cc02_g08720 Coffea canephora HOM05D004899 ORTHO05D006580 4.7e-142 508.4 402 68.4
TAR362G0172 Trochodendron aralioides HOM05D004899 ORTHO05D006580 3.4e-140 502.3 394 66.2
Nn1g02931 Nelumbo nucifera HOM05D004899 ORTHO05D006580 4.4e-140 501.9 392 66.6
Sed0011238 Sechium edule HOM05D004899 ORTHO05D006580 5.8e-140 501.5 396 66.2
SalBow6G5574 Salvia bowleyana HOM05D004899 ORTHO05D006580 8.3e-139 497.7 417 64.5
AUR62040914 Chenopodium quinoa HOM05D004899 ORTHO05D006580 1.4e-138 496.9 392 64.3
SGA_v2.0_scaffold426G51496 Striga asiatica HOM05D004899 ORTHO05D006580 1.9e-138 496.5 395 67.3
MBI07_g12932_MAGBIO Magnolia biondii HOM05D004899 ORTHO05D006580 5.4e-138 495.0 395 66.1
Atru.chr2.1001 Acer truncatum HOM05D004899 ORTHO05D006580 4.6e-137 491.9 371 70.4
Lj2A44T81 Lonicera japonica HOM05D004899 ORTHO05D006580 5.1e-136 488.4 438 61.4
Aqoxy5G00161 Aquilegia oxysepala HOM05D004899 ORTHO05D006580 1.5e-135 486.9 388 66.8
arahy.Tifrunner.gnm1.ann1.A8VMLZ Arachis hypogaea HOM05D004899 ORTHO05D006580 1.5e-135 486.9 397 66.0
arahy.Tifrunner.gnm1.ann1.VXFY9N Arachis hypogaea HOM05D004899 ORTHO05D006580 1.9e-135 486.5 397 65.7
Ciclev10024089m.g Citrus clementina HOM05D004899 ORTHO05D006580 1.9e-135 486.5 371 69.8
Glyma.03G250100 Glycine max HOM05D004899 ORTHO05D006580 1.9e-135 486.5 391 66.2
Glyma.19G247700 Glycine max HOM05D004899 ORTHO05D006580 3.3e-135 485.7 391 66.5
VMungo0540G0495 Vigna mungo HOM05D004899 ORTHO05D006580 2.8e-134 482.6 391 65.7
Os10g0467200 Oryza sativa ssp. japonica HOM05D004899 ORTHO05D006580 1.2e-132 477.2 393 64.4
PSO674G0057 Papaver somniferum HOM05D004899 ORTHO05D006580 1.2e-132 477.2 395 64.3
Zm00001eb046420 Zea mays HOM05D004899 ORTHO05D006580 2.6e-132 476.1 393 65.1
AUR62004828 Chenopodium quinoa HOM05D004899 ORTHO05D006580 4.4e-132 475.3 356 68.0
Ca_11390_v3 Cicer arietinum L. HOM05D004899 ORTHO05D006580 4.1e-130 468.8 390 64.1
Phvul.006G104800 Phaseolus vulgaris HOM05D004899 ORTHO05D006580 5.4e-130 468.4 391 64.2
Lj1g0026343 Lotus japonicus HOM05D004899 ORTHO05D006580 2.7e-129 466.1 407 61.7
Lalb_Chr04g0253351 Lupinus albus HOM05D004899 ORTHO05D006580 1.0e-128 464.2 394 62.7
ATR0736G049 Amborella trichopoda HOM05D004899 ORTHO05D006580 8.6e-128 461.1 392 63.0
DCAR_023087 Daucus carota HOM05D004899 ORTHO05D006580 8.6e-128 461.1 391 63.4
TPR.G10414 Trifolium pratense HOM05D004899 ORTHO05D006580 1.8e-125 453.4 391 61.4
Nitab4.5_0003965g0030 Nicotiana tabacum HOM05D004899 ORTHO05D006580 1.2e-124 450.7 394 63.2
unitig_899.g15065 Utricularia gibba HOM05D004899 ORTHO05D006580 9.3e-122 441.0 401 60.6
CDE05G2618 Ceratophyllum demersum HOM05D004899 ORTHO05D006580 3.5e-121 439.1 398 60.6
vmacro10377 Vaccinium macrocarpon HOM05D004899 ORTHO05D006580 5.6e-119 431.8 426 56.8
CARHR078590 Cardamine hirsuta HOM05D004899 ORTHO05D006580 4.9e-115 418.7 242 89.3
Nitab4.5_0000914g0090 Nicotiana tabacum HOM05D004899 ORTHO05D006580 2.5e-111 406.4 394 60.2
Medtr1g116380 Medicago truncatula HOM05D004899 ORTHO05D006580 1.6e-110 403.7 368 59.8
SMO367G0182 Selaginella moellendorffii HOM05D004899 ORTHO05D006580 3.1e-109 399.4 391 55.0
Pp3c17_6400 Physcomitrium patens HOM05D004899 ORTHO05D006580 1.6e-105 387.1 396 54.8
Ah.06g191810 Amaranthus hybridus HOM05D004899 ORTHO05D006580 2.7e-105 386.3 392 53.3
AagrBONN_evm.TU.Sc2ySwM_228.2413 Anthoceros agrestis HOM05D004899 ORTHO05D006580 2.8e-102 376.3 400 52.2
Cpa.g.sc306.4 Carica papaya HOM05D004899 ORTHO05D006580 5.7e-95 352.1 392 51.8
Psat0s1997g0040 Pisum sativum HOM05D004899 ORTHO05D006580 1.6e-94 350.5 343 58.0
Mapoly0097s0077 Marchantia polymorpha HOM05D004899 ORTHO05D006580 7.2e-90 335.1 313 57.2
HPP92_008536 Vanilla planifolia HOM05D004899 ORTHO05D006580 1.0e-88 331.3 285 63.2
Haze_04413 Corylus avellana HOM05D004899 ORTHO05D006580 3.6e-73 279.6 329 51.7
MD12G1249500 Malus domestica HOM05D004899 ORTHO05D006580 1.8e-72 277.3 299 55.2
CARHR078600 Cardamine hirsuta HOM05D004899 ORTHO05D006580 4.4e-71 272.7 153 92.8
SHI31416 Sapria himalayana HOM05D004899 ORTHO05D006580 2.0e-68 263.8 379 47.0
RhsimUnG0045000 Rhododendron simsii HOM05D004899 ORTHO05D006580 7.7e-68 261.9 374 44.4
C07p09790 Brassica napus HOM05D004899 ORTHO05D006580 1.8e-64 250.8 161 80.7
CBR_g51833 Chara braunii HOM05D004899 ORTHO05D006580 1.4e-61 241.1 545 33.8
TPR.G8890 Trifolium pratense HOM05D001167 ORTHO05D001054 9.4e-58 228.4 170 65.9
Oeu050631.1 Olea europaea HOM05D004899 ORTHO05D006580 4.0e-56 223.0 295 47.5
Cre06.g263602 Chlamydomonas reinhardtii HOM05D004899 ORTHO05D006580 2.0e-55 220.7 419 33.4
BolC5t34933H Brassica oleracea HOM05D004899 ORTHO05D006580 3.1e-53 213.4 121 93.4
CANSAT80G2333 Cannabis sativa HOM05D004899 ORTHO05D006580 2.7e-52 210.3 186 59.7
CANSAT80G2786 Cannabis sativa HOM05D004899 ORTHO05D006580 1.0e-51 208.4 186 60.2
PRCOL_00005674 Prasinoderma coloniale HOM05D004899 ORTHO05D006580 3.8e-51 206.5 390 36.4
C01p22380 Brassica napus HOM05D004899 ORTHO05D006580 2.5e-50 203.8 134 79.1
BcaC06g35909 Brassica carinata HOM05D004899 ORTHO05D006580 2.7e-49 200.3 146 74.0
MCO09G554 Micromonas commoda HOM05D004899 ORTHO05D006580 1.0e-48 198.4 420 36.0
Hma1.2p1_1336F.1_g276500 Hydrangea macrophylla HOM05D004899 ORTHO05D006580 1.7e-43 181.0 122 75.4
BolC6t38557H Brassica oleracea HOM05D004899 ORTHO05D006580 7.3e-42 175.6 142 68.3
BraA04t16133Z Brassica rapa HOM05D004899 ORTHO05D006580 3.6e-41 173.3 112 82.1
BraA05t23048Z Brassica rapa HOM05D004899 ORTHO05D006580 1.4e-40 171.4 92 94.6
MD00G1148800 Malus domestica HOM05D004899 ORTHO05D006580 2.3e-40 170.6 207 49.8
Cc06_g01540 Coffea canephora HOM05D004899 ORTHO05D006580 4.4e-39 166.4 125 73.6
Cc05_g01300 Coffea canephora HOM05D004899 ORTHO05D006580 4.9e-38 162.9 125 67.2
Cc06_g14670 Coffea canephora HOM05D004899 ORTHO05D006580 6.4e-30 136.0 146 60.3
BcaC09g50711 Brassica carinata HOM05D004899 ORTHO05D006580 9.2e-29 132.1 117 60.7
Oeu040904.1 Olea europaea HOM05D004899 ORTHO05D006580 4.3e-26 123.2 69 76.8
SEGI_05516 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 1.4e-24 118.2 91 65.9
MD08G1214200 Malus domestica HOM05D004899 ORTHO05D006580 1.5e-23 114.8 81 70.4
SEGI_08581 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 3.4e-23 113.6 148 43.2
BolC7t41419H Brassica oleracea HOM05D004899 ORTHO05D006580 3.5e-20 103.6 63 77.8
SEGI_06182 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 1.5e-18 98.2 76 68.4
Psat3g057720 Pisum sativum HOM05D004899 ORTHO05D006580 4.7e-17 93.2 50 78.0
FAN18G0756 Fragaria x ananassa HOM05D004899 ORTHO05D019122 1.5e-15 88.2 81 61.7
SalBow6G6423 Salvia bowleyana HOM05D031023 ORTHO05D019122 4.4e-15 86.7 65 64.6
FvH4_3g30700 Fragaria vesca HOM05D004899 ORTHO05D019122 3.8e-14 83.6 57 70.2
FvH4_4g13630 Fragaria vesca HOM05D004899 ORTHO05D019122 3.0e-11 73.9 44 79.5
Cc04_g06470 Coffea canephora HOM05D004899 ORTHO05D034818 1.4e-08 65.1 38 84.2
A04p04990 Brassica napus HOM05D004899 ORTHO05D006580 4.0e-08 63.5 43 69.8
BolC1t02169H Brassica oleracea HOM05D004899 ORTHO05D006580 3.4e-07 60.5 36 83.3
Haze_02280 Corylus avellana HOM05D000013 ORTHO05D000689 7.6e-07 59.3 35 80.0
Psat3g113200 Pisum sativum HOM05D004899 ORTHO05D034818 7.6e-07 59.3 47 57.4
SalBow5G1052 Salvia bowleyana HOM05D031023 ORTHO05D019122 2.2e-06 57.8 68 45.6
SalBow6G4382 Salvia bowleyana HOM05D031023 ORTHO05D019122 2.2e-06 57.8 68 45.6
SalBow8G1246 Salvia bowleyana HOM05D031023 ORTHO05D019122 2.2e-06 57.8 68 45.6


User provided reference genes

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