Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g04055 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1871.3 939 100.0
C03p45560 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1691.4 903 95.6
BolC3t16833H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1680.2 903 94.7
BraA03t12911Z Brassica rapa HOM05D003977 ORTHO05D004536 0.0e+00 1624.4 919 90.6
A03p37570 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1615.9 903 91.7
BcaB04g18687 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1537.7 908 87.1
Sp3g10500 Schrenkiella parvula HOM05D003977 ORTHO05D004536 0.0e+00 1512.7 906 85.0
A05p37080 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1502.6 908 84.4
C05p55510 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1490.7 908 83.7
BolC5t34217H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1485.3 908 83.6
Thhalv10019977m.g Eutrema salsugineum HOM05D003977 ORTHO05D004536 0.0e+00 1473.4 906 83.1
Carub.0003s1164 Capsella rubella HOM05D003977 ORTHO05D004536 0.0e+00 1465.7 906 82.6
CARHR086830 Cardamine hirsuta HOM05D003977 ORTHO05D004536 0.0e+00 1460.7 906 82.5
BolC1t05248H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1456.0 907 82.8
C01p53050 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1452.6 907 82.6
BcaC09g48227 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1449.9 907 82.7
AL3G23940 Arabidopsis lyrata HOM05D003977 ORTHO05D004536 0.0e+00 1437.6 906 81.5
AT3G12280 Arabidopsis thaliana HOM05D003977 ORTHO05D004536 0.0e+00 1437.6 906 81.7
Aa31LG7G12510 Aethionema arabicum HOM05D003977 ORTHO05D004536 0.0e+00 1369.0 913 78.2
THA.LOC104799327 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 0.0e+00 1292.7 918 73.7
THA.LOC104826752 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 0.0e+00 1284.2 923 73.7
Ciclev10000128m.g Citrus clementina HOM05D003977 ORTHO05D004536 0.0e+00 1188.7 851 71.9
Dinv14623 Davidia involucrata HOM05D003977 ORTHO05D004536 0.0e+00 1183.7 849 71.1
Atru.chr12.1306 Acer truncatum HOM05D003977 ORTHO05D004536 0.0e+00 1180.6 849 71.6
RcHm_v2.0_Chr1g0326641 Rosa chinensis HOM05D003977 ORTHO05D004536 0.0e+00 1177.9 918 67.3
Dinv06987 Davidia involucrata HOM05D003977 ORTHO05D004536 0.0e+00 1174.1 871 69.9
ClCG05G026990 Citrullus lanatus HOM05D003977 ORTHO05D004536 0.0e+00 1173.3 851 70.7
CsaV3_5G036930 Cucumis sativus L. HOM05D003977 ORTHO05D004536 0.0e+00 1163.7 850 70.5
MELO3C012492.2 Cucumis melo HOM05D003977 ORTHO05D004536 0.0e+00 1162.1 850 70.2
Potri.001G031400 Populus trichocarpa HOM05D003977 ORTHO05D004536 0.0e+00 1158.3 848 70.2
FvH4_7g03720 Fragaria vesca HOM05D003977 ORTHO05D004536 0.0e+00 1157.1 847 69.5
Prupe.2G042800 Prunus persica HOM05D003977 ORTHO05D004536 0.0e+00 1157.1 848 70.8
Haze_02995 Corylus avellana HOM05D003977 ORTHO05D004536 0.0e+00 1156.0 856 70.0
Sed0027944 Sechium edule HOM05D003977 ORTHO05D004536 0.0e+00 1156.0 851 70.5
Cfa010949 Carpinus fangiana HOM05D003977 ORTHO05D004536 0.0e+00 1154.8 847 70.0
MD02G1277700 Malus domestica HOM05D003977 ORTHO05D004536 0.0e+00 1154.0 919 65.9
TAR622G1067 Trochodendron aralioides HOM05D003977 ORTHO05D004536 0.0e+00 1154.0 850 69.5
CiPaw.06G056400 Carya illinoinensis HOM05D003977 ORTHO05D004536 0.0e+00 1152.1 849 69.7
FAN06G3123 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1151.7 844 69.8
Sed0009106 Sechium edule HOM05D003977 ORTHO05D004536 0.0e+00 1150.6 847 69.7
TAR629G1670 Trochodendron aralioides HOM05D003977 ORTHO05D004536 0.0e+00 1146.7 870 68.5
Duzib106G1228 Durio zibethinus HOM05D003977 ORTHO05D004536 0.0e+00 1144.8 924 66.1
Glyma.15G230300 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1143.6 849 70.0
FAN03G2084 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1143.3 844 69.2
QL93p0049_0031 Quercus lobata HOM05D003977 ORTHO05D004536 0.0e+00 1142.9 853 69.3
MD07G1045800 Malus domestica HOM05D003977 ORTHO05D004536 0.0e+00 1142.5 919 65.2
FAN01G0005 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1141.3 851 68.7
TWI15G1223 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 0.0e+00 1140.9 849 69.8
TWI38G1846 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 0.0e+00 1140.6 849 69.8
QL04p021130 Quercus lobata HOM05D003977 ORTHO05D004536 0.0e+00 1135.6 853 68.9
Glyma.13G192400 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1135.2 850 69.8
Nn4g22094 Nelumbo nucifera HOM05D003977 ORTHO05D004536 0.0e+00 1134.0 853 68.6
Rhsim12G0015900 Rhododendron simsii HOM05D003977 ORTHO05D004536 0.0e+00 1133.6 850 69.5
Thecc.10G142800 Theobroma cacao HOM05D003977 ORTHO05D004536 0.0e+00 1133.2 917 67.0
Sabra01G0022500 Salix brachista HOM05D003977 ORTHO05D004536 0.0e+00 1131.7 894 66.6
Lj1g0022785 Lotus japonicus HOM05D003977 ORTHO05D004536 0.0e+00 1128.2 918 64.9
CiPaw.14G009300 Carya illinoinensis HOM05D003977 ORTHO05D004536 0.0e+00 1127.5 849 68.6
PGSC0003DMG400011581 Solanum tuberosum HOM05D003977 ORTHO05D004536 0.0e+00 1125.9 847 68.4
Duzib114G0684 Durio zibethinus HOM05D003977 ORTHO05D004536 0.0e+00 1121.7 916 66.2
GSVIVG01035560001 Vitis vinifera HOM05D003977 ORTHO05D004536 0.0e+00 1121.7 851 68.6
vmacro01007 Vaccinium macrocarpon HOM05D003977 ORTHO05D004536 0.0e+00 1119.0 866 67.6
Ca_23978_v3 Cicer arietinum L. HOM05D003977 ORTHO05D004536 0.0e+00 1118.6 874 66.5
CAN.G1588.14 Capsicum annuum HOM05D003977 ORTHO05D004536 0.0e+00 1118.2 848 68.6
arahy.Tifrunner.gnm1.ann1.I0XR4S Arachis hypogaea HOM05D003977 ORTHO05D004536 0.0e+00 1116.3 937 63.9
Phvul.011G201200 Phaseolus vulgaris HOM05D003977 ORTHO05D004536 0.0e+00 1115.9 849 68.4
VMungo1127G0455 Vigna mungo HOM05D003977 ORTHO05D004536 0.0e+00 1115.5 847 67.8
TPR.G8543 Trifolium pratense HOM05D003977 ORTHO05D004536 0.0e+00 1114.8 856 67.6
Gorai.012G019200 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1114.0 923 64.8
Medtr8g040560 Medicago truncatula HOM05D003977 ORTHO05D004536 0.0e+00 1114.0 854 67.8
Lalb_Chr03g0032201 Lupinus albus HOM05D003977 ORTHO05D004536 0.0e+00 1113.6 915 63.8
Sopen09g034250 Solanum pennellii HOM05D003977 ORTHO05D004536 0.0e+00 1113.6 847 68.2
Solyc09g091280.4 Solanum lycopersicum HOM05D003977 ORTHO05D004536 0.0e+00 1112.4 847 67.9
CANSAT56G0684 Cannabis sativa HOM05D003977 ORTHO05D004536 0.0e+00 1111.7 877 66.5
Gohir.D04G016500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1111.7 924 64.7
Psat4g145000 Pisum sativum HOM05D003977 ORTHO05D004536 0.0e+00 1111.7 863 67.0
Glyma.04G192200 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1110.9 851 69.0
arahy.Tifrunner.gnm1.ann1.Q9GEU7 Arachis hypogaea HOM05D003977 ORTHO05D004536 0.0e+00 1110.1 873 66.8
Peaxi162Scf00047g01540 Petunia axillaris HOM05D003977 ORTHO05D004536 0.0e+00 1107.4 846 68.4
CSS0046878 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 0.0e+00 1106.7 849 67.1
Gohir.A05G399500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1105.1 923 64.4
DCAR_004259 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1104.4 857 66.5
DCAR_004260 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1104.4 857 66.5
FAN10G3794 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1103.2 844 67.4
Lalb_Chr19g0132941 Lupinus albus HOM05D003977 ORTHO05D004536 0.0e+00 1100.9 852 67.4
Nn3g16238 Nelumbo nucifera HOM05D003977 ORTHO05D004536 0.0e+00 1099.3 869 65.9
Cc11_g14880 Coffea canephora HOM05D003977 ORTHO05D004536 0.0e+00 1098.2 871 66.6
Gohir.D04G016400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1097.8 923 63.7
Gorai.012G019100 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1097.8 923 63.8
Lj3g0027102 Lotus japonicus HOM05D003977 ORTHO05D004536 0.0e+00 1092.8 952 62.4
COL.COLO4_20737 Corchorus olitorius HOM05D003977 ORTHO05D004536 0.0e+00 1090.5 926 64.0
DCAR_008196 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1087.0 848 66.2
MBI11_g07996_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 0.0e+00 1085.1 864 65.6
HanXRQChr06g0175421 Helianthus annuus HOM05D003977 ORTHO05D004536 0.0e+00 1083.6 849 65.5
Prupe.8G086800 Prunus persica HOM05D003977 ORTHO05D004536 0.0e+00 1083.2 846 67.3
PGR031G0564 Punica granatum HOM05D003977 ORTHO05D004536 0.0e+00 1080.9 850 65.2
Aqoxy5G03020 Aquilegia oxysepala HOM05D003977 ORTHO05D004536 0.0e+00 1077.4 874 64.6
Sc02g0008490 Simmondsia chinensis HOM05D003977 ORTHO05D004536 6.4e-312 1073.5 850 65.3
EL10Ac1g02273 Beta vulgaris HOM05D003977 ORTHO05D004536 9.6e-311 1070.1 888 64.3
AUR62035738 Chenopodium quinoa HOM05D003977 ORTHO05D004536 2.0e-308 1062.4 853 65.3
Gohir.A05G399400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 2.0e-308 1062.4 819 68.3
MSTRG.444 Avicennia marina HOM05D003977 ORTHO05D004536 2.9e-307 1058.5 871 64.8
ECA246G4717 Erigeron canadensis HOM05D003977 ORTHO05D004536 1.9e-306 1055.8 859 64.4
Manes.16G045800 Manihot esculenta HOM05D003977 ORTHO05D004536 3.3e-306 1055.0 780 70.5
Eucgr.G03211 Eucalyptus grandis HOM05D003977 ORTHO05D004536 9.5e-306 1053.5 848 63.7
PSO478G2410 Papaver somniferum HOM05D003977 ORTHO05D004536 1.2e-305 1053.1 862 64.3
Manes.03G097800 Manihot esculenta HOM05D003977 ORTHO05D004536 3.6e-305 1051.6 783 69.9
PSO017G2490 Papaver somniferum HOM05D003977 ORTHO05D004536 3.6e-305 1051.6 862 64.4
AUR62033843 Chenopodium quinoa HOM05D003977 ORTHO05D004536 2.6e-303 1045.4 860 64.2
AUR62041503 Chenopodium quinoa HOM05D003977 ORTHO05D004536 2.6e-303 1045.4 855 64.0
Migut.K01127 Erythranthe guttata HOM05D003977 ORTHO05D004536 2.6e-303 1045.4 849 65.5
Gorai.009G299000 Gossypium raimondii HOM05D003977 ORTHO05D004536 8.3e-302 1040.4 921 61.5
Lsat_1_v5_gn_3_33021 Lactuca sativa HOM05D003977 ORTHO05D004536 1.9e-301 1039.3 849 64.1
Gohir.D05G284400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 7.0e-301 1037.3 856 64.4
SalBow2G0230 Salvia bowleyana HOM05D003977 ORTHO05D004536 1.2e-297 1026.5 851 63.8
Gohir.A05G283400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 2.1e-292 1009.2 848 64.2
Hund13302 Selenicereus undatus HOM05D003977 ORTHO05D004536 6.2e-289 997.7 914 59.8
SGA_v2.0_scaffold81G25979 Striga asiatica HOM05D003977 ORTHO05D004536 2.6e-287 992.3 861 61.7
ATR0582G127 Amborella trichopoda HOM05D003977 ORTHO05D004536 2.9e-286 988.8 870 60.6
Ah.05g166690 Amaranthus hybridus HOM05D003977 ORTHO05D004536 4.3e-282 974.9 796 63.9
Os08g0538700 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 7.1e-277 957.6 870 60.0
CDE09G1395 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 5.6e-274 948.0 850 60.2
PSO478G5179 Papaver somniferum HOM05D003977 ORTHO05D004536 1.2e-271 940.3 856 59.8
Zm00001eb037120 Zea mays HOM05D003977 ORTHO05D004536 4.9e-270 934.9 856 59.2
Nitab4.5_0002182g0050 Nicotiana tabacum HOM05D003977 ORTHO05D004536 1.4e-269 933.3 863 60.3
HPP92_000321 Vanilla planifolia HOM05D003977 ORTHO05D004536 6.0e-268 927.9 866 56.8
Nitab4.5_0008702g0020 Nicotiana tabacum HOM05D003977 ORTHO05D004536 1.3e-267 926.8 869 59.0
unitig_26.g10435 Utricularia gibba HOM05D003977 ORTHO05D004536 6.9e-264 914.4 851 58.3
SEGI_35648 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 1.1e-261 907.1 866 57.0
SEGI_33786 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 5.1e-259 898.3 826 58.5
Zm00001eb198220 Zea mays HOM05D003977 ORTHO05D004536 7.4e-250 867.8 779 60.7
CSS0026343 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 4.6e-236 822.0 858 55.9
Lj3A1077G55 Lonicera japonica HOM05D003977 ORTHO05D004536 5.9e-223 778.5 613 67.5
Cpa.g.sc169.40 Carica papaya HOM05D003977 ORTHO05D004536 5.0e-222 775.4 848 53.3
CDE02G2393 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 6.5e-222 775.0 688 60.9
Os11g0533500 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 1.5e-210 737.3 841 49.5
Pp3c15_2800 Physcomitrium patens HOM05D003977 ORTHO05D004536 2.5e-205 719.9 874 47.0
Pp3c9_2440 Physcomitrium patens HOM05D003977 ORTHO05D004536 5.2e-203 712.2 871 47.2
MBI11_g02479_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 3.7e-201 706.1 660 59.8
AagrBONN_evm.TU.Sc2ySwM_362.2961 Anthoceros agrestis HOM05D003977 ORTHO05D004536 1.2e-199 701.0 883 45.3
Mapoly0131s0020 Marchantia polymorpha HOM05D003977 ORTHO05D004536 6.6e-198 695.3 871 47.6
Zm00001eb197990 Zea mays HOM05D003977 ORTHO05D004536 3.1e-187 659.8 767 48.2
Zm00001eb113470 Zea mays HOM05D003977 ORTHO05D004536 6.8e-179 632.1 714 49.4
unitig_22.g6370 Utricularia gibba HOM05D003977 ORTHO05D004536 6.0e-175 619.0 584 57.9
BraA05t22505Z Brassica rapa HOM05D003977 ORTHO05D004536 1.1e-171 608.2 399 79.4
SMO134G0004 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 1.4e-171 607.8 854 43.9
Ciclev10003102m.g Citrus clementina HOM05D003977 ORTHO05D004536 1.5e-149 534.6 610 54.1
GSVIVG01032958001 Vitis vinifera HOM05D003977 ORTHO05D004536 1.0e-142 511.9 549 52.6
Pp3c19_9580 Physcomitrium patens HOM05D003977 ORTHO05D004536 3.7e-140 503.4 589 49.7
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 2.2e-137 494.2 729 44.7
SMO141G0281 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 3.5e-135 486.9 854 38.1
Manes.11G074000 Manihot esculenta HOM05D003977 ORTHO05D004536 5.0e-121 439.9 567 46.4
Ciclev10014630m.g Citrus clementina HOM05D003977 ORTHO05D004536 1.9e-120 438.0 524 47.7
CBR_g45825 Chara braunii HOM05D003977 ORTHO05D004536 2.4e-115 421.0 941 32.7
Atru.chr6.2718 Acer truncatum HOM05D003977 ORTHO05D004536 1.2e-95 355.5 550 41.1
QL04p021333 Quercus lobata HOM05D003977 ORTHO05D004536 9.1e-91 339.3 503 42.9
C02p49640 Brassica napus HOM05D003977 ORTHO05D004536 8.9e-78 296.2 165 94.5
BolC2t11042H Brassica oleracea HOM05D003977 ORTHO05D004536 3.7e-76 290.8 160 96.2
Hma1.2p1_0073F.1_g038600 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 3.6e-55 221.1 172 65.1
Cre06.g255450 Chlamydomonas reinhardtii HOM05D003977 ORTHO05D004536 9.9e-53 213.0 920 24.7
SEGI_04896 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 6.4e-52 210.3 229 52.8
PRCOL_00001859 Prasinoderma coloniale HOM05D003977 ORTHO05D004536 6.0e-50 203.8 542 29.9
HanXRQChr04g0106401 Helianthus annuus HOM05D003977 ORTHO05D004536 7.8e-50 203.4 195 57.4
Pp3c19_9550 Physcomitrium patens HOM05D003977 ORTHO05D004536 6.4e-44 183.7 151 57.0
unitig_22.g6371 Utricularia gibba HOM05D003977 ORTHO05D004536 1.4e-43 182.6 162 58.0
CDE02G2628 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 5.1e-41 174.1 151 57.6
MCO08G295 Micromonas commoda HOM05D003977 ORTHO05D004536 4.8e-39 167.5 450 28.9
Hma1.2p1_0164F.1_g073080 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 1.2e-37 162.9 132 60.6
Pp3c19_9596 Physcomitrium patens HOM05D003977 ORTHO05D004536 3.5e-34 151.4 171 45.0
Oeu034276.1 Olea europaea HOM05D003977 ORTHO05D004536 1.1e-27 129.8 166 45.2
Hma1.2p1_0468F.1_g158780 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 1.9e-19 102.4 96 56.2
Hma1.2p1_0112F.1_g054450 Hydrangea macrophylla HOM05D000462 ORTHO05D004536 7.1e-19 100.5 78 61.5
Hma1.2p1_1036F.1_g250510 Hydrangea macrophylla HOM05D000462 ORTHO05D004536 7.1e-19 100.5 78 61.5
SalBow1G6973 Salvia bowleyana HOM05D003977 ORTHO05D004536 5.1e-17 94.4 101 47.5
Rhsim02G0185900 Rhododendron simsii HOM05D016728 ORTHO05D340288 2.6e-13 82.0 63 68.3
Hma1.2p1_0417F.1_g148820 Hydrangea macrophylla HOM05D000825 ORTHO05D003684 3.4e-13 81.6 60 70.0
Medtr3g006170 Medicago truncatula HOM05D003977 ORTHO05D004536 1.4e-11 76.3 64 57.8
SalBow2G2207 Salvia bowleyana HOM05D003977 ORTHO05D004536 1.9e-11 75.9 86 44.2


User provided reference genes

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