Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g03890 Brassica carinata HOM05D006362 ORTHO05D008295 0.0e+00 1163.3 585 100.0
C03p47540 Brassica napus HOM05D006362 ORTHO05D008295 4.8e-311 1070.5 585 94.5
BolC3t17030H Brassica oleracea HOM05D006362 ORTHO05D008295 1.1e-307 1059.3 585 93.3
A03p39180 Brassica napus HOM05D006362 ORTHO05D008295 8.5e-305 1049.7 585 92.3
BraA03t13067Z Brassica rapa HOM05D006362 ORTHO05D008295 1.1e-304 1049.3 585 92.1
Carub.0003s1481 Capsella rubella HOM05D006362 ORTHO05D008295 1.1e-299 1032.7 585 90.6
AL3G27550 Arabidopsis lyrata HOM05D006362 ORTHO05D008295 1.1e-296 1022.7 585 89.6
AT3G15160 Arabidopsis thaliana HOM05D006362 ORTHO05D008295 1.2e-295 1019.2 585 89.2
Thhalv10020417m.g Eutrema salsugineum HOM05D006362 ORTHO05D008295 3.0e-294 1014.6 585 89.2
Sp3g13370 Schrenkiella parvula HOM05D006362 ORTHO05D008295 2.6e-293 1011.5 585 88.5
CARHR090140 Cardamine hirsuta HOM05D006362 ORTHO05D008295 9.2e-291 1003.0 583 89.2
Aa31LG8G2360 Aethionema arabicum HOM05D006362 ORTHO05D008295 3.3e-280 968.0 586 84.8
THA.LOC104818092 Tarenaya hassleriana HOM05D006362 ORTHO05D008295 1.4e-262 909.4 589 79.5
Thecc.07G046200 Theobroma cacao HOM05D006362 ORTHO05D008295 2.1e-234 815.8 593 71.2
Manes.15G074800 Manihot esculenta HOM05D006362 ORTHO05D008295 8.7e-233 810.4 591 71.6
GSVIVG01001989001 Vitis vinifera HOM05D006362 ORTHO05D008295 1.1e-232 810.1 591 71.2
Gorai.002G084800 Gossypium raimondii HOM05D006362 ORTHO05D008295 7.4e-232 807.4 592 70.4
Potri.011G135800 Populus trichocarpa HOM05D006362 ORTHO05D008295 2.1e-231 805.8 589 71.0
Gohir.A01G076501 Gossypium hirsutum HOM05D006362 ORTHO05D008295 6.2e-231 804.3 592 70.1
Sed0025840 Sechium edule HOM05D006362 ORTHO05D008295 1.2e-229 800.0 595 69.2
Eucgr.F03442 Eucalyptus grandis HOM05D006362 ORTHO05D008295 2.6e-229 798.9 591 70.1
CsaV3_1G044730 Cucumis sativus L. HOM05D006362 ORTHO05D008295 4.5e-229 798.1 591 69.9
Duzib268G0905 Durio zibethinus HOM05D006362 ORTHO05D008295 4.5e-229 798.1 592 69.9
TWI38G1299 Tripterygium wilfordii HOM05D006362 ORTHO05D008295 7.6e-229 797.3 586 70.8
Atru.chr2.3247 Acer truncatum HOM05D006362 ORTHO05D008295 1.0e-228 797.0 590 71.0
MELO3C018085.2 Cucumis melo HOM05D006362 ORTHO05D008295 1.0e-228 797.0 591 69.7
TAR626G1624 Trochodendron aralioides HOM05D006362 ORTHO05D008295 1.0e-228 797.0 589 70.5
QL08p012554 Quercus lobata HOM05D006362 ORTHO05D008295 2.2e-228 795.8 589 70.5
Ciclev10007871m.g Citrus clementina HOM05D006362 ORTHO05D008295 1.9e-227 792.7 591 70.1
Gohir.D01G064000 Gossypium hirsutum HOM05D006362 ORTHO05D008295 1.2e-226 790.0 592 69.4
FvH4_4g07170 Fragaria vesca HOM05D006362 ORTHO05D008295 1.6e-226 789.6 590 70.2
FAN12G0341 Fragaria x ananassa HOM05D006362 ORTHO05D008295 2.7e-226 788.9 590 70.2
RcHm_v2.0_Chr4g0399351 Rosa chinensis HOM05D006362 ORTHO05D008295 6.0e-226 787.7 599 69.1
MD03G1209000 Malus domestica HOM05D006362 ORTHO05D008295 1.0e-225 786.9 586 70.0
Sc14g0006480 Simmondsia chinensis HOM05D006362 ORTHO05D008295 1.0e-225 786.9 594 68.7
Dinv40729 Davidia involucrata HOM05D006362 ORTHO05D008295 3.9e-225 785.0 590 70.0
Oeu021406.2 Olea europaea HOM05D006362 ORTHO05D008295 2.5e-224 782.3 595 67.9
CANSAT11G0353 Cannabis sativa HOM05D006362 ORTHO05D008295 9.7e-224 780.4 589 68.9
Lj3g0015245 Lotus japonicus HOM05D006362 ORTHO05D008295 9.7e-224 780.4 589 69.3
FAN22G0212 Fragaria x ananassa HOM05D006362 ORTHO05D008295 4.8e-223 778.1 599 68.8
Cfa020397 Carpinus fangiana HOM05D006362 ORTHO05D008295 8.2e-223 777.3 576 71.7
TPR.G25875 Trifolium pratense HOM05D006362 ORTHO05D008295 1.1e-222 776.9 591 67.5
Ah.06g182950 Amaranthus hybridus HOM05D006362 ORTHO05D008295 6.9e-222 774.2 596 67.4
PSO832G4364 Papaver somniferum HOM05D006362 ORTHO05D008295 6.9e-222 774.2 587 68.7
Prupe.4G206200 Prunus persica HOM05D006362 ORTHO05D008295 1.2e-221 773.5 577 70.4
Lalb_Chr03g0030071 Lupinus albus HOM05D006362 ORTHO05D008295 1.5e-221 773.1 590 68.1
Aqoxy1G03661 Aquilegia oxysepala HOM05D006362 ORTHO05D008295 5.9e-221 771.2 584 68.0
Hma1.2p1_1344F.1_g277040 Hydrangea macrophylla HOM05D006362 ORTHO05D008295 1.7e-220 769.6 581 69.9
Medtr4g081050 Medicago truncatula HOM05D006362 ORTHO05D008295 3.8e-220 768.5 595 66.9
arahy.Tifrunner.gnm1.ann1.Z96I2W Arachis hypogaea HOM05D006362 ORTHO05D008295 6.5e-220 767.7 585 67.2
Psat7g162880 Pisum sativum HOM05D006362 ORTHO05D008295 1.9e-219 766.1 595 66.7
Gorai.009G425700 Gossypium raimondii HOM05D006362 ORTHO05D008295 4.2e-219 765.0 593 68.1
Glyma.06G271800 Glycine max HOM05D006362 ORTHO05D008295 2.7e-218 762.3 588 67.9
PGR031G2573 Punica granatum HOM05D006362 ORTHO05D008295 6.1e-218 761.1 574 69.9
AUR62020525 Chenopodium quinoa HOM05D006362 ORTHO05D008295 3.9e-217 758.4 571 69.5
Nn1g07069 Nelumbo nucifera HOM05D006362 ORTHO05D008295 1.1e-216 756.9 573 70.0
Haze_09637 Corylus avellana HOM05D006362 ORTHO05D008295 6.3e-215 751.1 652 63.5
Cc05_g13400 Coffea canephora HOM05D006362 ORTHO05D008295 1.4e-214 750.0 588 67.9
Nitab4.5_0002342g0020 Nicotiana tabacum HOM05D006362 ORTHO05D008295 1.8e-214 749.6 589 67.2
DCAR_022536 Daucus carota HOM05D006362 ORTHO05D008295 2.4e-214 749.2 612 65.0
Phvul.011G136800 Phaseolus vulgaris HOM05D006362 ORTHO05D008295 3.1e-214 748.8 577 68.3
Solyc10g006410.3 Solanum lycopersicum HOM05D006362 ORTHO05D008295 3.1e-214 748.8 588 66.2
Ca_18860_v3 Cicer arietinum L. HOM05D006362 ORTHO05D008295 1.2e-213 746.9 579 67.4
Sopen10g002360 Solanum pennellii HOM05D006362 ORTHO05D008295 2.0e-213 746.1 588 66.0
CAN.G1781.12 Capsicum annuum HOM05D006362 ORTHO05D008295 7.7e-213 744.2 580 67.1
HanXRQChr13g0407741 Helianthus annuus HOM05D006362 ORTHO05D008295 7.7e-213 744.2 584 66.6
arahy.Tifrunner.gnm1.ann1.GJJ2CM Arachis hypogaea HOM05D006362 ORTHO05D008295 2.2e-212 742.7 573 67.2
ATR0697G203 Amborella trichopoda HOM05D006362 ORTHO05D008295 2.5e-211 739.2 586 65.4
EL10Ac4g07932 Beta vulgaris HOM05D006362 ORTHO05D008295 2.1e-210 736.1 585 66.5
ECA240G1610 Erigeron canadensis HOM05D006362 ORTHO05D008295 3.6e-210 735.3 590 65.6
Rhsim06G0213400 Rhododendron simsii HOM05D006362 ORTHO05D008295 1.1e-208 730.3 640 63.0
COL.COLO4_09973 Corchorus olitorius HOM05D004186 ORTHO05D006965 9.7e-208 727.2 594 66.0
HPP92_009387 Vanilla planifolia HOM05D006362 ORTHO05D008295 4.5e-205 718.4 587 64.4
SGA_v2.0_scaffold80G25930 Striga asiatica HOM05D006362 ORTHO05D008295 1.0e-204 717.2 587 64.6
Gohir.A04G020300 Gossypium hirsutum HOM05D006362 ORTHO05D008295 1.3e-204 716.8 593 65.6
AUR62015672 Chenopodium quinoa HOM05D006362 ORTHO05D008295 5.0e-204 714.9 594 64.5
ClCG05G014560 Citrullus lanatus HOM05D006362 ORTHO05D008295 2.5e-203 712.6 609 63.4
Peaxi162Scf00387g00613 Petunia axillaris HOM05D006362 ORTHO05D008295 3.0e-201 705.7 578 65.2
CDE05G0917 Ceratophyllum demersum HOM05D006362 ORTHO05D008295 5.2e-201 704.9 579 64.9
Lj1C868T5 Lonicera japonica HOM05D006362 ORTHO05D008295 1.3e-196 690.3 562 67.1
FAN17G1244 Fragaria x ananassa HOM05D006362 ORTHO05D008295 1.1e-195 687.2 587 64.2
Sabra11G0122000 Salix brachista HOM05D006362 ORTHO05D008295 1.0e-193 680.6 602 62.6
Os04g0626900 Oryza sativa ssp. japonica HOM05D006362 ORTHO05D008295 5.2e-193 678.3 587 60.1
Migut.M01793 Erythranthe guttata HOM05D006362 ORTHO05D008295 8.8e-193 677.6 584 62.0
Hund23291 Selenicereus undatus HOM05D006362 ORTHO05D008295 1.4e-190 670.2 514 67.5
Lsat_1_v5_gn_5_81640 Lactuca sativa HOM05D006362 ORTHO05D008295 4.5e-189 665.2 576 63.0
Nitab4.5_0002229g0190 Nicotiana tabacum HOM05D006362 ORTHO05D008295 5.5e-187 658.3 610 60.2
CiPaw.11G185900 Carya illinoinensis HOM05D006362 ORTHO05D008295 5.7e-176 621.7 455 71.6
Mapoly0021s0009 Marchantia polymorpha HOM05D006362 ORTHO05D008295 6.4e-167 591.7 599 54.1
Gohir.D05G366200 Gossypium hirsutum HOM05D006362 ORTHO05D008295 6.2e-162 575.1 466 65.9
BolC3t17019H Brassica oleracea HOM05D006362 ORTHO05D008295 8.0e-162 574.7 343 89.2
Pp3c24_12510 Physcomitrium patens HOM05D006362 ORTHO05D008295 2.6e-160 569.7 595 51.9
vmacro11753 Vaccinium macrocarpon HOM05D006362 ORTHO05D008295 9.2e-158 561.2 708 47.5
SMO115G0345 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 2.1e-146 523.5 583 51.8
AagrBONN_evm.TU.Sc2ySwM_117.2426 Anthoceros agrestis HOM05D006362 ORTHO05D008295 4.7e-146 522.3 591 49.2
Pp3c23_6050 Physcomitrium patens HOM05D006362 ORTHO05D008295 3.0e-132 476.5 577 49.0
PGSC0003DMG403014396 Solanum tuberosum HOM05D006362 ORTHO05D008295 3.8e-103 379.8 272 67.6
HPP92_009392 Vanilla planifolia HOM05D006362 ORTHO05D008295 1.8e-89 334.3 299 60.2
Zm00001eb070060 Zea mays HOM05D006362 ORTHO05D008295 2.9e-79 300.4 299 53.8
CSS0013960 Camellia sinensis var. sinensis HOM05D006362 ORTHO05D008295 1.7e-74 284.6 247 62.3
PGSC0003DMG402014396 Solanum tuberosum HOM05D006362 ORTHO05D008295 1.5e-67 261.5 193 68.4
SEGI_18975 Sequoiadendron giganteum HOM05D006362 ORTHO05D008295 9.8e-51 205.7 164 65.2
Rhsim12G0205700 Rhododendron simsii HOM05D006362 ORTHO05D008295 2.0e-43 181.4 324 42.0
CBR_g57499 Chara braunii HOM05D006362 ORTHO05D008295 1.7e-42 178.3 264 38.3
Gorai.002G084600 Gossypium raimondii HOM05D006362 ORTHO05D008295 3.2e-41 174.1 120 71.7
Cpa.g.sc131.92 Carica papaya HOM05D006362 ORTHO05D008295 1.6e-40 171.8 116 73.3
Gohir.D01G063866 Gossypium hirsutum HOM05D006362 ORTHO05D008295 8.6e-39 166.0 120 69.2
SHI31860 Sapria himalayana HOM05D006362 ORTHO05D008295 2.1e-37 161.4 149 59.1
SEGI_13710 Sequoiadendron giganteum HOM05D006362 ORTHO05D008295 1.3e-34 152.1 129 58.1
VMungo0251G2436 Vigna mungo HOM05D006362 ORTHO05D008295 3.9e-31 140.6 117 63.2
Hma1.2p1_1609F.1_g293480 Hydrangea macrophylla HOM05D006362 ORTHO05D008295 8.9e-28 129.4 178 47.2
SMO347G0562 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 3.5e-24 117.5 174 43.1
HPP92_009393 Vanilla planifolia HOM05D006362 ORTHO05D008295 1.0e-23 115.9 94 61.7
SMO228G0126 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 9.6e-22 109.4 177 41.2
CBR_g57501 Chara braunii HOM05D006362 ORTHO05D008295 3.8e-18 97.4 123 44.7
HanXRQChr16g0507081 Helianthus annuus HOM05D006362 ORTHO05D008295 7.8e-16 89.7 72 63.9
SMO111G0176 Selaginella moellendorffii HOM05D013632 ORTHO05D008295 6.6e-15 86.7 95 46.3
SMO167G0061 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 1.9e-14 85.1 137 42.3
BcaB04g20946 Brassica carinata HOM05D006362 ORTHO05D008295 6.2e-13 80.1 45 82.2
Cc02_g13940 Coffea canephora HOM05D006362 ORTHO05D008295 1.3e-10 72.4 62 66.1
SMO118G0508 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 6.4e-10 70.1 160 33.1
SMO122G0015 Selaginella moellendorffii HOM05D006362 ORTHO05D374567 8.4e-10 69.7 129 36.4
Lsat_1_v5_gn_3_32440 Lactuca sativa HOM05D006362 ORTHO05D228842 1.1e-09 69.3 51 74.5
SMO014G0021 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 1.9e-09 68.6 162 32.7
SMO009G0006 Selaginella moellendorffii HOM05D013632 ORTHO05D379378 1.2e-08 65.9 139 37.4
SMO144G0005 Selaginella moellendorffii HOM05D013632 ORTHO05D378182 1.5e-06 58.9 74 43.2


User provided reference genes

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