Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g03779 Brassica carinata HOM05D000157 ORTHO05D000311 9.6e-62 240.0 119 100.0
BcaB04g18908 Brassica carinata HOM05D000157 ORTHO05D000311 2.9e-42 175.3 108 83.3
C03p48390 Brassica napus HOM05D000157 ORTHO05D000311 6.7e-39 164.1 112 78.6
A03p39920 Brassica napus HOM05D000157 ORTHO05D000311 1.5e-38 162.9 112 77.7
BcaC01g03810 Brassica carinata HOM05D000157 ORTHO05D000311 2.5e-38 162.2 112 77.7
BolC3t17119H Brassica oleracea HOM05D000157 ORTHO05D000311 2.5e-38 162.2 112 77.7
BraA03t13139Z Brassica rapa HOM05D000157 ORTHO05D000311 4.3e-38 161.4 111 77.5
BcaB06g25768 Brassica carinata HOM05D000157 ORTHO05D000311 3.2e-33 145.2 121 68.6
Sp3g14990 Schrenkiella parvula HOM05D000157 ORTHO05D000311 5.5e-33 144.4 129 64.3
Thhalv10021205m.g Eutrema salsugineum HOM05D000157 ORTHO05D000311 8.7e-31 137.1 129 60.5
A05p32890 Brassica napus HOM05D000157 ORTHO05D000311 1.9e-30 136.0 120 65.8
AL3G29650 Arabidopsis lyrata HOM05D000157 ORTHO05D000311 1.6e-29 132.9 131 60.3
BraA05t22111Z Brassica rapa HOM05D000157 ORTHO05D000311 2.1e-29 132.5 120 64.2
CARHR091970 Cardamine hirsuta HOM05D000157 ORTHO05D000311 6.2e-29 131.0 133 58.6
AT3G16720 Arabidopsis thaliana HOM05D000157 ORTHO05D000311 1.8e-28 129.4 133 58.6
Carub.0003s1645 Capsella rubella HOM05D000157 ORTHO05D000311 9.0e-28 127.1 128 60.2
BcaC05g28857 Brassica carinata HOM05D000157 ORTHO05D000311 1.2e-27 126.7 109 67.9
BolC5t33717H Brassica oleracea HOM05D000157 ORTHO05D000311 1.2e-27 126.7 109 67.9
C05p49590 Brassica napus HOM05D000157 ORTHO05D000311 2.6e-27 125.6 96 74.0
BraA01t03818Z Brassica rapa HOM05D000086 ORTHO05D000311 5.8e-27 124.4 102 67.6
A01p37570 Brassica napus HOM05D000086 ORTHO05D000311 7.6e-27 124.0 102 67.6
Aa31LG8G3810 Aethionema arabicum HOM05D000157 ORTHO05D000311 1.6e-24 116.3 127 55.1
Carub.0002s1231 Capsella rubella HOM05D000157 ORTHO05D000311 4.6e-24 114.8 117 58.1
BolC1t04732H Brassica oleracea HOM05D000157 ORTHO05D000311 7.9e-24 114.0 113 62.8
Thhalv10025860m.g Eutrema salsugineum HOM05D000157 ORTHO05D000311 1.6e-21 106.3 117 50.4
C01p47620 Brassica napus HOM05D000157 ORTHO05D000311 4.8e-21 104.8 105 61.9
AL7G39260 Arabidopsis lyrata HOM05D000157 ORTHO05D000311 1.1e-20 103.6 112 50.0
BcaC09g48626 Brassica carinata HOM05D000157 ORTHO05D000311 2.4e-20 102.4 103 62.1
Aa31LG10G6180 Aethionema arabicum HOM05D000157 ORTHO05D000311 6.9e-20 100.9 127 48.8
THA.LOC104820288 Tarenaya hassleriana HOM05D000157 ORTHO05D000311 3.4e-19 98.6 129 48.8
BolC1t04735H Brassica oleracea HOM05D000086 ORTHO05D000311 7.7e-19 97.4 106 58.5
BraA01t03819Z Brassica rapa HOM05D000086 ORTHO05D000311 3.2e-17 92.0 106 52.8
Haze_01168 Corylus avellana HOM05D000157 ORTHO05D000311 4.2e-17 91.7 127 50.4
A01p37580 Brassica napus HOM05D000157 ORTHO05D000311 2.1e-16 89.4 106 53.8
Cpa.g.sc50.166 Carica papaya HOM05D000157 ORTHO05D000311 2.1e-16 89.4 120 49.2
Manes.03G198400 Manihot esculenta HOM05D000157 ORTHO05D000311 2.1e-16 89.4 121 51.2
RcHm_v2.0_Chr4g0423331 Rosa chinensis HOM05D000157 ORTHO05D000311 2.1e-16 89.4 115 52.2
FvH4_4g18630 Fragaria vesca HOM05D000157 ORTHO05D000311 2.7e-16 89.0 115 51.3
FAN07G0744 Fragaria x ananassa HOM05D000157 ORTHO05D000311 2.7e-16 89.0 115 51.3
Prupe.1G124000 Prunus persica HOM05D000157 ORTHO05D000311 3.6e-16 88.6 113 51.3
BolC1t04734H Brassica oleracea HOM05D000157 ORTHO05D000311 4.6e-16 88.2 106 50.9
FAN17G1138 Fragaria x ananassa HOM05D000157 ORTHO05D000311 1.4e-15 86.7 115 49.6
Manes.15G010700 Manihot esculenta HOM05D000157 ORTHO05D000311 1.8e-15 86.3 126 50.8
BcaC07g37943 Brassica carinata HOM05D000157 ORTHO05D000311 2.3e-15 85.9 118 45.8
FAN12G1491 Fragaria x ananassa HOM05D000157 ORTHO05D000311 2.3e-15 85.9 115 50.4
Psat1g155880 Pisum sativum HOM05D000157 ORTHO05D000311 2.3e-15 85.9 121 49.6
Cfa015425 Carpinus fangiana HOM05D000157 ORTHO05D000311 3.9e-15 85.1 122 49.2
QL06p010340 Quercus lobata HOM05D000157 ORTHO05D000311 3.9e-15 85.1 120 48.3
FAN12G3919 Fragaria x ananassa HOM05D000157 ORTHO05D000311 5.1e-15 84.7 119 48.7
MD16G1164700 Malus domestica HOM05D000157 ORTHO05D000311 8.8e-15 84.0 115 51.3
BcaB04g18349 Brassica carinata HOM05D000157 ORTHO05D000311 1.1e-14 83.6 109 47.7
BcaC09g48624 Brassica carinata HOM05D000086 ORTHO05D000311 1.1e-14 83.6 95 56.8
C01p47630 Brassica napus HOM05D000086 ORTHO05D000311 1.1e-14 83.6 95 56.8
BraA08t33206Z Brassica rapa HOM05D000157 ORTHO05D000311 1.1e-14 83.6 118 44.9
Potri.008G219200 Populus trichocarpa HOM05D000157 ORTHO05D000311 2.0e-14 82.8 126 47.6
CiPaw.02G080100 Carya illinoinensis HOM05D000086 ORTHO05D000311 3.3e-14 82.0 125 48.8
Sabra10G0006300 Salix brachista HOM05D000157 ORTHO05D000311 3.3e-14 82.0 124 47.6
A08p12150 Brassica napus HOM05D000157 ORTHO05D000311 4.3e-14 81.6 118 44.1
Phvul.009G250400 Phaseolus vulgaris HOM05D000157 ORTHO05D000311 7.4e-14 80.9 106 48.1
VMungo1309G0389 Vigna mungo HOM05D000157 ORTHO05D000311 7.4e-14 80.9 101 50.5
BolC8t48327H Brassica oleracea HOM05D000157 ORTHO05D000311 1.3e-13 80.1 119 44.5
Duzib151G0864 Durio zibethinus HOM05D000157 ORTHO05D000311 1.3e-13 80.1 133 41.4
Potri.010G010500 Populus trichocarpa HOM05D000157 ORTHO05D000311 1.3e-13 80.1 123 47.2
Atru.chr4.2897 Acer truncatum HOM05D000157 ORTHO05D000311 1.7e-13 79.7 137 43.8
MD13G1165000 Malus domestica HOM05D000157 ORTHO05D000311 1.7e-13 79.7 111 45.9
Thecc.04G288700 Theobroma cacao HOM05D000157 ORTHO05D000311 1.7e-13 79.7 133 41.4
Duzib052G0253 Durio zibethinus HOM05D000157 ORTHO05D000311 2.8e-13 79.0 126 42.9
AT4G15975 Arabidopsis thaliana HOM05D000157 ORTHO05D000311 3.7e-13 78.6 90 47.8
TWI09G0951 Tripterygium wilfordii HOM05D000157 ORTHO05D000311 4.8e-13 78.2 117 47.0
CiPaw.01G145500 Carya illinoinensis HOM05D000157 ORTHO05D000311 6.3e-13 77.8 127 44.1
Sabra08G0151600 Salix brachista HOM05D000157 ORTHO05D000311 8.2e-13 77.4 126 47.6
Gorai.006G261100 Gossypium raimondii HOM05D000157 ORTHO05D000311 1.8e-12 76.3 117 47.0
PGR004G2331 Punica granatum HOM05D000086 ORTHO05D000311 1.8e-12 76.3 133 44.4
TWI73G1023 Tripterygium wilfordii HOM05D000157 ORTHO05D000311 1.8e-12 76.3 124 44.4
Gohir.A09G237500 Gossypium hirsutum HOM05D000157 ORTHO05D000311 4.1e-12 75.1 117 45.3
Lj3P823T20 Lonicera japonica HOM05D000157 ORTHO05D000311 1.2e-11 73.6 103 50.5
Gohir.D09G238400 Gossypium hirsutum HOM05D000157 ORTHO05D000311 1.5e-11 73.2 117 45.3
BraA01t03821Z Brassica rapa HOM05D000086 ORTHO05D000311 2.0e-11 72.8 99 46.5
Ca_01913_v3 Cicer arietinum L. HOM05D000157 ORTHO05D000311 2.6e-11 72.4 109 44.0
MELO3C006682.2 Cucumis melo HOM05D000086 ORTHO05D000311 3.4e-11 72.0 126 40.5
COL.COLO4_13825 Corchorus olitorius HOM05D000157 ORTHO05D000311 4.5e-11 71.6 127 40.9
Sed0003854 Sechium edule HOM05D000157 ORTHO05D000311 1.0e-10 70.5 131 42.0
TPR.G3178 Trifolium pratense HOM05D000157 ORTHO05D000311 1.0e-10 70.5 101 43.6
Gohir.A01G033066 Gossypium hirsutum HOM05D000157 ORTHO05D000311 1.3e-10 70.1 119 43.7
Oeu028316.1 Olea europaea HOM05D000157 ORTHO05D000311 2.2e-10 69.3 112 42.9
CsaV3_3G014860 Cucumis sativus L. HOM05D000086 ORTHO05D000311 2.9e-10 68.9 126 40.5
BcaC09g48625 Brassica carinata HOM05D000157 ORTHO05D000311 3.8e-10 68.6 67 62.7
Oeu031980.1 Olea europaea HOM05D000157 ORTHO05D000311 3.8e-10 68.6 103 49.5
CSS0032988 Camellia sinensis var. sinensis HOM05D000157 ORTHO05D000311 5.0e-10 68.2 120 40.8
Dinv44352 Davidia involucrata HOM05D000157 ORTHO05D000311 5.0e-10 68.2 123 43.9
Peaxi162Scf00065g00131 Petunia axillaris HOM05D000157 ORTHO05D000311 6.5e-10 67.8 117 45.3
Ca_21480_v3 Cicer arietinum L. HOM05D000157 ORTHO05D000311 8.5e-10 67.4 116 40.5
Lj6g0017544 Lotus japonicus HOM05D000157 ORTHO05D000311 1.4e-09 66.6 122 42.6
CSS0041397 Camellia sinensis var. sinensis HOM05D000157 ORTHO05D000311 1.9e-09 66.2 119 40.3
Medtr4g120270 Medicago truncatula HOM05D000157 ORTHO05D000311 1.9e-09 66.2 126 40.5
Gohir.D01G023496 Gossypium hirsutum HOM05D000157 ORTHO05D000311 2.5e-09 65.9 122 39.3
Gorai.002G028700 Gossypium raimondii HOM05D000157 ORTHO05D000311 2.5e-09 65.9 122 39.3
PGSC0003DMG400011326 Solanum tuberosum HOM05D000157 ORTHO05D000311 5.5e-09 64.7 124 41.9
Lsat_1_v5_gn_6_78761 Lactuca sativa HOM05D000157 ORTHO05D000311 7.2e-09 64.3 115 40.9
Lj6P680T34 Lonicera japonica HOM05D000157 ORTHO05D000311 1.2e-08 63.5 104 45.2
Sopen01g028080 Solanum pennellii HOM05D000157 ORTHO05D000311 1.2e-08 63.5 121 42.1
TAR633G2334 Trochodendron aralioides HOM05D000157 ORTHO05D000311 1.2e-08 63.5 137 40.1
AUR62018069 Chenopodium quinoa HOM05D000157 ORTHO05D000311 2.7e-08 62.4 132 39.4
Hma1.2p1_0804F.1_g221080 Hydrangea macrophylla HOM05D000157 ORTHO05D000311 2.7e-08 62.4 139 38.1
Solyc01g066430.3 Solanum lycopersicum HOM05D000157 ORTHO05D000311 2.7e-08 62.4 121 41.3
Glyma.07G245400 Glycine max HOM05D000157 ORTHO05D000311 3.6e-08 62.0 109 38.5
SGA_v2.0_scaffold67G22599 Striga asiatica HOM05D000157 ORTHO05D000311 4.7e-08 61.6 113 41.6
Actinidia00001 Actinidia chinensis HOM05D000157 ORTHO05D000311 6.1e-08 61.2 116 39.7
Actinidia13389 Actinidia chinensis HOM05D000157 ORTHO05D000311 6.1e-08 61.2 116 39.7
Lalb_Chr15g0086061 Lupinus albus HOM05D000086 ORTHO05D000311 1.0e-07 60.5 112 40.2
vmacro15213 Vaccinium macrocarpon HOM05D000157 ORTHO05D000311 1.4e-07 60.1 129 40.3
Ah.13g074800 Amaranthus hybridus HOM05D000157 ORTHO05D000311 2.3e-07 59.3 145 35.9
Nitab4.5_0000695g0100 Nicotiana tabacum HOM05D000157 ORTHO05D000311 3.0e-07 58.9 128 39.1
DCAR_030506 Daucus carota HOM05D000157 ORTHO05D000311 3.9e-07 58.5 109 38.5
Nn2g10227 Nelumbo nucifera HOM05D002671 ORTHO05D049278 3.9e-07 58.5 145 38.6
Psat4g025720 Pisum sativum HOM05D000157 ORTHO05D000311 3.9e-07 58.5 112 39.3
Aqoxy2G02899 Aquilegia oxysepala HOM05D000157 ORTHO05D000311 5.1e-07 58.2 143 34.3
Lalb_Chr13g0298161 Lupinus albus HOM05D000157 ORTHO05D000311 6.7e-07 57.8 101 40.6
MBI18_g04555_MAGBIO Magnolia biondii HOM05D000157 ORTHO05D000311 6.7e-07 57.8 127 37.8
EL10Ac3g06652 Beta vulgaris HOM05D000157 ORTHO05D000311 8.8e-07 57.4 149 36.2
Glyma.09G042400 Glycine max HOM05D000157 ORTHO05D000311 1.1e-06 57.0 115 34.8
MSTRG.3893 Avicennia marina HOM05D000157 ORTHO05D000311 2.0e-06 56.2 120 35.8
Glyma.17G028400 Glycine max HOM05D000157 ORTHO05D000311 2.0e-06 56.2 102 38.2
Nn3g21537 Nelumbo nucifera HOM05D000157 ORTHO05D000311 2.0e-06 56.2 156 34.0
Nitab4.5_0003767g0050 Nicotiana tabacum HOM05D000157 ORTHO05D000311 2.6e-06 55.8 128 37.5
Nitab4.5_0006338g0090 Nicotiana tabacum HOM05D000086 ORTHO05D000311 3.3e-06 55.5 113 34.5
AUR62015272 Chenopodium quinoa HOM05D000157 ORTHO05D000311 4.4e-06 55.1 141 36.2
Medtr2g436100 Medicago truncatula HOM05D000157 ORTHO05D000311 4.4e-06 55.1 116 34.5
Phvul.003G107100 Phaseolus vulgaris HOM05D000157 ORTHO05D000311 4.4e-06 55.1 105 36.2


User provided reference genes

Program Settings