Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g03721 Brassica carinata HOM05D008662 ORTHO05D010843 1.0e-159 566.6 280 100.0
BolC3t17219H Brassica oleracea HOM05D008662 ORTHO05D010843 1.7e-154 549.3 282 96.8
A03p40460 Brassica napus HOM05D008662 ORTHO05D010843 7.5e-150 533.9 280 92.9
C03p49300 Brassica napus HOM05D008662 ORTHO05D010843 2.9e-149 531.9 280 92.9
BraA03t13204Z Brassica rapa HOM05D008662 ORTHO05D010843 6.4e-149 530.8 280 92.5
BcaB04g18973 Brassica carinata HOM05D008662 ORTHO05D010843 1.7e-133 479.6 274 85.0
Sp3g16060 Schrenkiella parvula HOM05D008662 ORTHO05D010843 3.1e-103 379.0 281 67.3
C05p48350 Brassica napus HOM05D008662 ORTHO05D010843 1.7e-101 373.2 282 68.1
BcaC05g28732 Brassica carinata HOM05D008662 ORTHO05D010843 2.9e-101 372.5 282 67.7
A05p31860 Brassica napus HOM05D008662 ORTHO05D010843 7.1e-100 367.9 279 67.0
BraA05t22018Z Brassica rapa HOM05D008662 ORTHO05D010843 2.7e-99 365.9 265 66.8
BolC5t33569H Brassica oleracea HOM05D008662 ORTHO05D010843 3.1e-95 352.4 321 59.2
BcaB06g25856 Brassica carinata HOM05D008662 ORTHO05D010843 1.1e-92 344.0 279 62.7
C01p46230 Brassica napus HOM05D008662 ORTHO05D010843 1.9e-92 343.2 285 61.1
BolC1t04584H Brassica oleracea HOM05D008662 ORTHO05D010843 1.9e-92 343.2 285 61.1
BcaC09g48756 Brassica carinata HOM05D008662 ORTHO05D010843 4.2e-92 342.0 285 61.1
BraA01t03711Z Brassica rapa HOM05D008662 ORTHO05D010843 7.2e-92 341.3 285 60.7
A01p36470 Brassica napus HOM05D008662 ORTHO05D010843 1.8e-90 336.7 285 60.0
Thhalv10021356m.g Eutrema salsugineum HOM05D008662 ORTHO05D010843 2.2e-88 329.7 280 60.7
BcaB04g20805 Brassica carinata HOM05D008662 ORTHO05D010843 1.4e-82 310.5 255 60.4
AT5G25470 Arabidopsis thaliana HOM05D008662 ORTHO05D010843 1.5e-81 307.0 297 52.9
AL6G37260 Arabidopsis lyrata HOM05D008662 ORTHO05D010843 2.0e-81 306.6 286 54.9
AL6G37270 Arabidopsis lyrata HOM05D008662 ORTHO05D010843 1.7e-80 303.5 286 53.1
Carub.0006s2333 Capsella rubella HOM05D008662 ORTHO05D010843 6.5e-77 291.6 294 52.7
AT5G25475 Arabidopsis thaliana HOM05D008662 ORTHO05D010843 1.5e-76 290.4 296 51.0
BraA02t08937Z Brassica rapa HOM05D008662 ORTHO05D010843 3.6e-75 285.8 281 52.3
C02p59500 Brassica napus HOM05D008662 ORTHO05D010843 6.1e-75 285.0 277 52.0
A02p39720 Brassica napus HOM05D008662 ORTHO05D010843 1.0e-74 284.3 280 52.1
BolC2t12013H Brassica oleracea HOM05D008662 ORTHO05D010843 1.4e-74 283.9 278 52.2
Carub.0006s2332 Capsella rubella HOM05D008662 ORTHO05D010843 2.0e-73 280.0 285 51.2
Sp2g22060 Schrenkiella parvula HOM05D008662 ORTHO05D010843 2.0e-73 280.0 277 53.8
A06p36170 Brassica napus HOM05D008662 ORTHO05D010843 9.7e-73 277.7 277 50.9
C07p42350 Brassica napus HOM05D008662 ORTHO05D010843 6.3e-72 275.0 284 51.1
BolC7t44763H Brassica oleracea HOM05D005914 ORTHO05D007361 6.3e-72 275.0 286 51.0
BraA06t26539Z Brassica rapa HOM05D008662 ORTHO05D010843 8.2e-72 274.6 282 50.7
Thhalv10004752m.g Eutrema salsugineum HOM05D008662 ORTHO05D010843 3.1e-71 272.7 280 52.9
BraA09t36259Z Brassica rapa HOM05D008662 ORTHO05D010843 7.0e-71 271.6 319 48.6
CARHR187920 Cardamine hirsuta HOM05D008662 ORTHO05D010843 3.5e-70 269.2 285 48.1
Aa31LG11G4850 Aethionema arabicum HOM05D005914 ORTHO05D007361 2.8e-56 223.0 271 45.0
BcaB07g32200 Brassica carinata HOM05D008662 ORTHO05D010843 2.6e-41 173.3 209 45.9
BcaB04g20807 Brassica carinata HOM05D008662 ORTHO05D010843 1.7e-40 170.6 122 63.1
BcaB04g19788 Brassica carinata HOM05D008662 ORTHO05D010843 1.4e-34 151.0 128 56.2
CARHR000030 Cardamine hirsuta HOM05D008662 ORTHO05D010843 1.0e-29 134.8 175 43.4
BcaNung02264 Brassica carinata HOM05D008662 ORTHO05D010843 3.9e-29 132.9 127 50.4
C07p42410 Brassica napus HOM05D008662 ORTHO05D010843 4.3e-28 129.4 117 52.1
BolC7t44768H Brassica oleracea HOM05D008662 ORTHO05D010843 4.3e-28 129.4 117 52.1
CARHR187960 Cardamine hirsuta HOM05D008662 ORTHO05D010843 5.2e-26 122.5 94 62.8
THA.LOC104819596 Tarenaya hassleriana HOM05D007600 ORTHO05D009132 5.6e-20 102.4 278 30.9
AL6G29290 Arabidopsis lyrata HOM05D007600 ORTHO05D009132 1.1e-18 98.2 271 28.8
AT5G18090 Arabidopsis thaliana HOM05D007600 ORTHO05D009132 1.2e-17 94.7 282 27.7
AT5G18000 Arabidopsis thaliana HOM05D007600 ORTHO05D009132 2.2e-16 90.5 282 26.6
Thhalv10015705m.g Eutrema salsugineum HOM05D007600 ORTHO05D009132 2.9e-16 90.1 264 26.1
AL6G29100 Arabidopsis lyrata HOM05D007600 ORTHO05D009132 3.8e-16 89.7 291 28.9
Sp6g26220 Schrenkiella parvula HOM05D007600 ORTHO05D009132 6.4e-16 89.0 266 26.7
Sp6g26290 Schrenkiella parvula HOM05D007600 ORTHO05D009132 1.1e-15 88.2 280 26.1
AT2G16210 Arabidopsis thaliana HOM05D007600 ORTHO05D009132 1.4e-15 87.8 256 26.6
AL3G52300 Arabidopsis lyrata HOM05D007600 ORTHO05D009132 2.4e-15 87.0 258 26.0
Aa31LG8G13300 Aethionema arabicum HOM05D007600 ORTHO05D009132 3.2e-15 86.7 264 25.0
C09p58890 Brassica napus HOM05D007600 ORTHO05D009132 7.1e-15 85.5 274 26.6
BcaB08g36708 Brassica carinata HOM05D007600 ORTHO05D009132 9.3e-15 85.1 274 26.3
BraA04t18782Z Brassica rapa HOM05D007600 ORTHO05D009132 4.6e-14 82.8 262 29.0
A04p33230 Brassica napus HOM05D007600 ORTHO05D009132 7.8e-14 82.0 262 29.0
C04p70920 Brassica napus HOM05D007600 ORTHO05D009132 7.8e-14 82.0 262 27.9
BolC2t06864H Brassica oleracea HOM05D007600 ORTHO05D009132 7.8e-14 82.0 267 25.5
BolC4t28592H Brassica oleracea HOM05D007600 ORTHO05D009132 7.8e-14 82.0 262 27.9
BraA10t44204Z Brassica rapa HOM05D007600 ORTHO05D009132 1.0e-13 81.6 270 25.2
Sp1g09320 Schrenkiella parvula HOM05D007600 ORTHO05D009132 1.0e-13 81.6 114 34.2
AL6G20180 Arabidopsis lyrata HOM05D007600 ORTHO05D009132 1.3e-13 81.3 293 28.0
Carub.0003s2950 Capsella rubella HOM05D007600 ORTHO05D009132 1.3e-13 81.3 266 25.6
BcaB04g18922 Brassica carinata HOM05D007600 ORTHO05D009132 1.7e-13 80.9 109 34.9
Aa31LG7G14390 Aethionema arabicum HOM05D006628 ORTHO05D000088 2.3e-13 80.5 267 21.3
BcaC04g18726 Brassica carinata HOM05D007600 ORTHO05D009132 2.3e-13 80.5 275 26.5
A02p04630 Brassica napus HOM05D007600 ORTHO05D009132 2.3e-13 80.5 268 26.1
BolC9t58734H Brassica oleracea HOM05D007600 ORTHO05D009132 2.3e-13 80.5 275 26.5
BcaC03g13563 Brassica carinata HOM05D007600 ORTHO05D009132 3.0e-13 80.1 267 25.1
C02p09570 Brassica napus HOM05D007600 ORTHO05D009132 3.0e-13 80.1 267 25.1
BraA04t18175Z Brassica rapa HOM05D007600 ORTHO05D009132 3.0e-13 80.1 270 25.2
Aa31LG5G11590 Aethionema arabicum HOM05D006628 ORTHO05D000088 3.9e-13 79.7 259 26.3
BcaB04g18919 Brassica carinata HOM05D007600 ORTHO05D009132 3.9e-13 79.7 112 35.7
A10p21410 Brassica napus HOM05D007600 ORTHO05D009132 3.9e-13 79.7 275 25.5
BraA03t13149Z Brassica rapa HOM05D007600 ORTHO05D009132 3.9e-13 79.7 252 24.6
Carub.0006s1638 Capsella rubella HOM05D007600 ORTHO05D009132 5.1e-13 79.3 109 39.4
A03p40020 Brassica napus HOM05D007600 ORTHO05D009132 6.6e-13 79.0 267 25.5
CARHR292350 Cardamine hirsuta HOM05D008662 ORTHO05D010843 8.7e-13 78.6 63 63.5
BolC4t27889H Brassica oleracea HOM05D007600 ORTHO05D009132 1.1e-12 78.2 250 26.0
Carub.0006s1619 Capsella rubella HOM05D007600 ORTHO05D009132 1.9e-12 77.4 148 31.1
BcaB05g23317 Brassica carinata HOM05D007600 ORTHO05D009132 2.5e-12 77.0 109 33.9
Thhalv10023054m.g Eutrema salsugineum HOM05D007600 ORTHO05D009132 2.5e-12 77.0 88 40.9
THA.LOC104807340 Tarenaya hassleriana HOM05D006628 ORTHO05D000088 2.5e-12 77.0 269 24.2
C03p48550 Brassica napus HOM05D007600 ORTHO05D009132 3.3e-12 76.6 109 33.9
CARHR195070 Cardamine hirsuta HOM05D007600 ORTHO05D009132 3.3e-12 76.6 272 23.5
A08p33850 Brassica napus HOM05D007600 ORTHO05D009132 4.3e-12 76.3 262 25.2
BraA08t35300Z Brassica rapa HOM05D007600 ORTHO05D009132 4.3e-12 76.3 262 25.2
AL457U10020 Arabidopsis lyrata HOM05D007600 ORTHO05D009132 5.6e-12 75.9 95 35.8
A05p32720 Brassica napus HOM05D007600 ORTHO05D009132 7.3e-12 75.5 109 32.1
BcaB06g25789 Brassica carinata HOM05D007600 ORTHO05D009132 9.6e-12 75.1 91 35.2
BcaC01g03795 Brassica carinata HOM05D007600 ORTHO05D009132 9.6e-12 75.1 91 35.2
BolC3t17133H Brassica oleracea HOM05D007600 ORTHO05D009132 9.6e-12 75.1 91 35.2
BraA02t05424Z Brassica rapa HOM05D007600 ORTHO05D009132 9.6e-12 75.1 268 25.0
BraA03t13150Z Brassica rapa HOM05D007600 ORTHO05D009132 9.6e-12 75.1 91 35.2
CARHR092260 Cardamine hirsuta HOM05D007600 ORTHO05D009132 9.6e-12 75.1 286 23.8
BcaB06g25788 Brassica carinata HOM05D007600 ORTHO05D009132 1.6e-11 74.3 112 34.8
BraA05t22094Z Brassica rapa HOM05D007600 ORTHO05D009132 1.6e-11 74.3 109 32.1
Sp3g15230 Schrenkiella parvula HOM05D007600 ORTHO05D009132 1.6e-11 74.3 109 33.0
BcaC01g03796 Brassica carinata HOM05D007600 ORTHO05D009132 2.8e-11 73.6 112 33.9
BolC3t17132H Brassica oleracea HOM05D007600 ORTHO05D009132 2.8e-11 73.6 112 33.9
Thhalv10015617m.g Eutrema salsugineum HOM05D007600 ORTHO05D009132 2.8e-11 73.6 90 34.4
BcaC07g38617 Brassica carinata HOM05D007600 ORTHO05D009132 3.6e-11 73.2 146 30.8
BolC8t49021H Brassica oleracea HOM05D007600 ORTHO05D009132 6.2e-11 72.4 114 31.6
AT5G57720 Arabidopsis thaliana HOM05D006628 ORTHO05D000088 8.1e-11 72.0 285 22.1
C03p48540 Brassica napus HOM05D007600 ORTHO05D009132 8.1e-11 72.0 114 33.3
BolC5t33688H Brassica oleracea HOM05D007600 ORTHO05D009132 8.1e-11 72.0 109 32.1
A03p40010 Brassica napus HOM05D007600 ORTHO05D009132 1.4e-10 71.2 90 35.6
THA.LOC104807272 Tarenaya hassleriana HOM05D006628 ORTHO05D000088 1.4e-10 71.2 263 22.4
AT5G09780 Arabidopsis thaliana HOM05D007600 ORTHO05D009132 1.8e-10 70.9 132 35.6
Thhalv10022138m.g Eutrema salsugineum HOM05D007600 ORTHO05D009132 1.8e-10 70.9 93 31.2
BcaC07g38580 Brassica carinata HOM05D007600 ORTHO05D009132 2.4e-10 70.5 113 31.0
BcaB06g25793 Brassica carinata HOM05D007600 ORTHO05D009132 3.1e-10 70.1 89 32.6
Aa31LG11G11510 Aethionema arabicum HOM05D007600 ORTHO05D009132 4.0e-10 69.7 256 27.0
C08p13860 Brassica napus HOM05D007600 ORTHO05D009132 5.3e-10 69.3 111 30.6
C05p49420 Brassica napus HOM05D007600 ORTHO05D009132 6.9e-10 68.9 109 31.2
AL8G33760 Arabidopsis lyrata HOM05D006628 ORTHO05D000088 9.0e-10 68.6 277 22.0
A02p08270 Brassica napus HOM05D006628 ORTHO05D000088 9.0e-10 68.6 128 33.6
BraA02t05899Z Brassica rapa HOM05D006628 ORTHO05D000088 9.0e-10 68.6 128 33.6
BcaC02g07741 Brassica carinata HOM05D007600 ORTHO05D009132 2.0e-09 67.4 122 30.3
AL3G29990 Arabidopsis lyrata HOM05D007600 ORTHO05D009132 2.6e-09 67.0 109 29.4
CARHR291980 Cardamine hirsuta HOM05D007600 ORTHO05D009132 3.4e-09 66.6 115 30.4
CARHR271470 Cardamine hirsuta HOM05D006628 ORTHO05D000088 4.4e-09 66.2 277 19.9
BcaB04g18921 Brassica carinata HOM05D007600 ORTHO05D009132 7.6e-09 65.5 105 28.6
BcaC05g28837 Brassica carinata HOM05D007600 ORTHO05D009132 7.6e-09 65.5 92 32.6
C07p60560 Brassica napus HOM05D006628 ORTHO05D000088 1.7e-08 64.3 120 29.2
BolC7t46487H Brassica oleracea HOM05D006628 ORTHO05D000088 1.7e-08 64.3 120 29.2
Thhalv10026054m.g Eutrema salsugineum HOM05D006628 ORTHO05D000088 1.7e-08 64.3 244 22.5
TWI63G1187 Tripterygium wilfordii HOM05D000888 ORTHO05D000740 1.7e-08 64.3 262 24.8
A04p26690 Brassica napus HOM05D007600 ORTHO05D009132 2.2e-08 63.9 87 32.2
C04p64110 Brassica napus HOM05D007600 ORTHO05D009132 2.9e-08 63.5 87 31.0
A03p62870 Brassica napus HOM05D006628 ORTHO05D000088 6.4e-08 62.4 120 28.3
BraA03t15364Z Brassica rapa HOM05D006628 ORTHO05D000088 6.4e-08 62.4 120 28.3
Thhalv10025812m.g Eutrema salsugineum HOM05D006628 ORTHO05D000088 8.4e-08 62.0 116 30.2
C01p16350 Brassica napus HOM05D006628 ORTHO05D000088 1.1e-07 61.6 118 31.4
BolC1t01586H Brassica oleracea HOM05D006628 ORTHO05D000088 1.4e-07 61.2 118 31.4
EL10Ac8g19103 Beta vulgaris HOM05D017700 ORTHO05D000088 1.9e-07 60.8 237 24.1
CARHR242370 Cardamine hirsuta HOM05D006628 ORTHO05D000088 2.4e-07 60.5 119 31.9
Hma1.2p1_1527F.1_g289040 Hydrangea macrophylla HOM05D000823 ORTHO05D000088 3.2e-07 60.1 103 32.0
BcaC09g51730 Brassica carinata HOM05D006628 ORTHO05D000088 7.1e-07 58.9 130 30.0
A01p08840 Brassica napus HOM05D006628 ORTHO05D000088 9.3e-07 58.5 134 29.9
BraA01t00831Z Brassica rapa HOM05D006628 ORTHO05D000088 9.3e-07 58.5 134 29.9
Carub.0003s1676 Capsella rubella HOM05D007600 ORTHO05D009132 9.3e-07 58.5 87 28.7
AT4G34400 Arabidopsis thaliana HOM05D006628 ORTHO05D000088 4.6e-06 56.2 118 27.1
Carub.0007s0593 Capsella rubella HOM05D006628 ORTHO05D000088 6.0e-06 55.8 128 26.6
Sp2g29690 Schrenkiella parvula HOM05D000823 ORTHO05D000088 6.0e-06 55.8 265 20.8


User provided reference genes

Program Settings