Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g03604 Brassica carinata HOM05D001104 ORTHO05D094937 8.1e-88 327.0 162 100.0
BolC4t27122H Brassica oleracea HOM05D001104 ORTHO05D039901 5.0e-29 131.7 73 90.4
BcaC02g08313 Brassica carinata HOM05D001104 ORTHO05D039901 4.0e-26 122.1 67 89.6
C03p50650 Brassica napus HOM05D001872 ORTHO05D001859 2.7e-22 109.4 170 43.5
BolC3t17354H Brassica oleracea HOM05D001872 ORTHO05D001859 2.7e-22 109.4 170 43.5
C02p14560 Brassica napus HOM05D001872 ORTHO05D001859 1.7e-21 106.7 112 58.0
BolC2t07582H Brassica oleracea HOM05D001872 ORTHO05D001859 1.7e-21 106.7 112 58.0
BcaC03g14180 Brassica carinata HOM05D001872 ORTHO05D001859 5.0e-21 105.1 110 58.2
C04p55890 Brassica napus HOM05D001872 ORTHO05D001859 1.5e-20 103.6 106 59.4
BcaC09g51528 Brassica carinata HOM05D001104 ORTHO05D006535 3.2e-20 102.4 55 92.7
A01p10280 Brassica napus HOM05D001104 ORTHO05D006535 3.2e-20 102.4 55 92.7
C01p12230 Brassica napus HOM05D001104 ORTHO05D006535 3.2e-20 102.4 55 92.7
BolC1t01199H Brassica oleracea HOM05D001104 ORTHO05D006535 3.2e-20 102.4 55 92.7
BraA01t00975Z Brassica rapa HOM05D001104 ORTHO05D006535 3.2e-20 102.4 55 92.7
BcaNung00010 Brassica carinata HOM05D001104 ORTHO05D006535 2.1e-19 99.8 55 89.1
Sp7g15700 Schrenkiella parvula HOM05D001104 ORTHO05D006535 6.1e-19 98.2 55 87.3
CARHR225140 Cardamine hirsuta HOM05D001104 ORTHO05D006535 8.8e-18 94.4 55 83.6
AL7G36010 Arabidopsis lyrata HOM05D001104 ORTHO05D006535 1.5e-17 93.6 55 83.6
Carub.0007s2292 Capsella rubella HOM05D001104 ORTHO05D006535 2.0e-17 93.2 55 83.6
AT4G18370 Arabidopsis thaliana HOM05D001104 ORTHO05D006535 3.4e-17 92.4 55 81.8
Thhalv10025708m.g Eutrema salsugineum HOM05D001104 ORTHO05D006535 4.4e-17 92.0 55 81.8
Aa31LG6G1070 Aethionema arabicum HOM05D001104 ORTHO05D006535 4.8e-16 88.6 55 76.4
THA.LOC104812860 Tarenaya hassleriana HOM05D001104 ORTHO05D006535 5.4e-15 85.1 55 74.5
Cc11_g03520 Coffea canephora HOM05D001104 ORTHO05D006535 5.5e-12 75.1 57 66.7
Duzib235G0771 Durio zibethinus HOM05D001104 ORTHO05D006535 7.2e-12 74.7 55 67.3
Thecc.06G148200 Theobroma cacao HOM05D001104 ORTHO05D006535 7.2e-12 74.7 55 67.3
Glyma.15G092800 Glycine max HOM05D001104 ORTHO05D006535 9.5e-12 74.3 70 52.9
RcHm_v2.0_Chr5g0014431 Rosa chinensis HOM05D001104 ORTHO05D006535 1.6e-11 73.6 55 63.6
Atru.chr10.1174 Acer truncatum HOM05D001104 ORTHO05D006535 2.1e-11 73.2 55 63.6
Rhsim13G0115200 Rhododendron simsii HOM05D001104 ORTHO05D006535 2.1e-11 73.2 55 63.6
COL.COLO4_26643 Corchorus olitorius HOM05D001104 ORTHO05D006535 2.7e-11 72.8 55 63.6
Eucgr.E02422 Eucalyptus grandis HOM05D001104 ORTHO05D006535 2.7e-11 72.8 55 61.8
Gohir.D10G043100 Gossypium hirsutum HOM05D001104 ORTHO05D006535 4.7e-11 72.0 55 60.0
GSVIVG01004589001 Vitis vinifera HOM05D001104 ORTHO05D006535 4.7e-11 72.0 55 60.0
GSVIVG01021522001 Vitis vinifera HOM05D001104 ORTHO05D006535 4.7e-11 72.0 55 60.0
Gohir.A10G042200 Gossypium hirsutum HOM05D001104 ORTHO05D006535 6.1e-11 71.6 55 61.8
Gorai.011G045700 Gossypium raimondii HOM05D001104 ORTHO05D006535 6.1e-11 71.6 55 61.8
Oeu030938.1 Olea europaea HOM05D001104 ORTHO05D006535 6.1e-11 71.6 55 63.6
FvH4_3g05290 Fragaria vesca HOM05D001104 ORTHO05D006535 8.0e-11 71.2 55 61.8
FAN11G2893 Fragaria x ananassa HOM05D001104 ORTHO05D006535 8.0e-11 71.2 55 61.8
PGSC0003DMG400029873 Solanum tuberosum HOM05D001104 ORTHO05D006535 8.0e-11 71.2 55 61.8
Sc24g0001720 Simmondsia chinensis HOM05D001104 ORTHO05D006535 1.0e-10 70.9 55 58.2
TWI53G0561 Tripterygium wilfordii HOM05D001104 ORTHO05D006535 1.0e-10 70.9 55 61.8
CSS0046912 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006535 1.4e-10 70.5 55 60.0
TAR627G0692 Trochodendron aralioides HOM05D001104 ORTHO05D006535 1.4e-10 70.5 55 60.0
Actinidia33715 Actinidia chinensis HOM05D001104 ORTHO05D006535 1.8e-10 70.1 55 61.8
FAN25G1463 Fragaria x ananassa HOM05D001104 ORTHO05D006535 1.8e-10 70.1 55 60.0
Psat1g191040 Pisum sativum HOM05D001104 ORTHO05D006535 2.3e-10 69.7 55 58.2
SGA_v2.0_scaffold1G00192 Striga asiatica HOM05D001104 ORTHO05D006535 2.3e-10 69.7 55 58.2
CiPaw.10G090500 Carya illinoinensis HOM05D001104 ORTHO05D006535 3.0e-10 69.3 55 60.0
Ciclev10016002m.g Citrus clementina HOM05D001104 ORTHO05D006535 3.0e-10 69.3 55 61.8
CsaV3_1G004620 Cucumis sativus L. HOM05D001104 ORTHO05D006535 3.0e-10 69.3 55 58.2
MD05G1281600 Malus domestica HOM05D001104 ORTHO05D006535 3.0e-10 69.3 55 60.0
DCAR_003899 Daucus carota HOM05D001104 ORTHO05D006535 4.0e-10 68.9 55 58.2
Prupe.4G083000 Prunus persica HOM05D001104 ORTHO05D006535 4.0e-10 68.9 55 61.8
PGR031G0308 Punica granatum HOM05D001104 ORTHO05D006535 5.2e-10 68.6 55 58.2
FAN21G1335 Fragaria x ananassa HOM05D001104 ORTHO05D006535 6.8e-10 68.2 55 60.0
Lj2A320T43 Lonicera japonica HOM05D001104 ORTHO05D006535 6.8e-10 68.2 55 56.4
Nn4g26599 Nelumbo nucifera HOM05D001104 ORTHO05D006535 6.8e-10 68.2 55 58.2
SalBow8G4304 Salvia bowleyana HOM05D001104 ORTHO05D006535 6.8e-10 68.2 55 60.0
FAN16G1841 Fragaria x ananassa HOM05D001104 ORTHO05D006535 8.8e-10 67.8 55 60.0
Cpa.g.sc17.5 Carica papaya HOM05D001104 ORTHO05D006535 1.2e-09 67.4 55 58.2
MELO3C002750.2 Cucumis melo HOM05D001104 ORTHO05D006535 1.2e-09 67.4 55 56.4
Glyma.13G219400 Glycine max HOM05D001104 ORTHO05D006535 1.2e-09 67.4 55 56.4
Sed0007195 Sechium edule HOM05D001104 ORTHO05D006535 1.2e-09 67.4 55 56.4
Aqoxy4G00068 Aquilegia oxysepala HOM05D001104 ORTHO05D006535 1.5e-09 67.0 55 56.4
Medtr2g019140 Medicago truncatula HOM05D001104 ORTHO05D006535 1.5e-09 67.0 55 54.5
Nitab4.5_0000833g0070 Nicotiana tabacum HOM05D001104 ORTHO05D006535 1.5e-09 67.0 55 56.4
Solyc08g048550.3 Solanum lycopersicum HOM05D001104 ORTHO05D006535 1.5e-09 67.0 55 58.2
CAN.G1145.1 Capsicum annuum HOM05D001104 ORTHO05D006535 2.0e-09 66.6 55 56.4
AUR62030175 Chenopodium quinoa HOM05D001104 ORTHO05D006535 2.0e-09 66.6 60 50.0
ClCG03G006710 Citrullus lanatus HOM05D001104 ORTHO05D006535 2.0e-09 66.6 55 54.5
CANSAT35G0592 Cannabis sativa HOM05D001104 ORTHO05D006535 2.6e-09 66.2 55 58.2
MBI02_g46874_MAGBIO Magnolia biondii HOM05D001104 ORTHO05D006535 2.6e-09 66.2 55 54.5
Manes.17G072000 Manihot esculenta HOM05D001104 ORTHO05D006535 2.6e-09 66.2 55 56.4
Sopen08g010960 Solanum pennellii HOM05D001104 ORTHO05D006535 2.6e-09 66.2 55 58.2
unitig_748.g7673 Utricularia gibba HOM05D001104 ORTHO05D006535 2.6e-09 66.2 55 50.9
Migut.M00896 Erythranthe guttata HOM05D001104 ORTHO05D006535 3.4e-09 65.9 55 54.5
QL05p057213 Quercus lobata HOM05D001104 ORTHO05D006535 3.4e-09 65.9 55 60.0
Sabra11G0066300 Salix brachista HOM05D001104 ORTHO05D006535 4.4e-09 65.5 55 54.5
Ca_00531_v3 Cicer arietinum L. HOM05D001104 ORTHO05D006535 5.7e-09 65.1 55 52.7
ECA236G1178 Erigeron canadensis HOM05D001104 ORTHO05D006535 5.7e-09 65.1 55 54.5
Lj6g0000691 Lotus japonicus HOM05D001104 ORTHO05D006535 5.7e-09 65.1 55 54.5
Nitab4.5_0009022g0010 Nicotiana tabacum HOM05D001104 ORTHO05D006535 5.7e-09 65.1 55 54.5
Lalb_Chr18g0055331 Lupinus albus HOM05D001104 ORTHO05D006535 7.5e-09 64.7 55 54.5
vmacro03335 Vaccinium macrocarpon HOM05D001104 ORTHO05D006535 7.5e-09 64.7 55 56.4
TPR.G26235 Trifolium pratense HOM05D001104 ORTHO05D006535 1.3e-08 63.9 55 52.7
arahy.Tifrunner.gnm1.ann1.VE11WY Arachis hypogaea HOM05D001104 ORTHO05D006535 1.7e-08 63.5 55 54.5
Hund17819 Selenicereus undatus HOM05D001104 ORTHO05D006535 2.2e-08 63.2 55 50.9
MBI02_g43974_MAGBIO Magnolia biondii HOM05D001104 ORTHO05D006535 2.8e-08 62.8 51 54.9
Potri.011G083300 Populus trichocarpa HOM05D001104 ORTHO05D006535 2.8e-08 62.8 55 54.5
Ah.14g086390 Amaranthus hybridus HOM05D001104 ORTHO05D006535 3.7e-08 62.4 56 48.2
Dinv32236 Davidia involucrata HOM05D001104 ORTHO05D006535 4.9e-08 62.0 107 38.3
Lsat_1_v5_gn_7_27640 Lactuca sativa HOM05D001104 ORTHO05D006535 4.9e-08 62.0 55 54.5
AUR62002715 Chenopodium quinoa HOM05D001104 ORTHO05D006535 6.3e-08 61.6 60 45.0
HanXRQChr04g0115731 Helianthus annuus HOM05D001104 ORTHO05D006535 6.3e-08 61.6 55 50.9
Peaxi162Scf00317g00115 Petunia axillaris HOM05D001104 ORTHO05D006535 6.3e-08 61.6 55 52.7
Duzib133G1354 Durio zibethinus HOM05D001104 ORTHO05D006535 8.3e-08 61.2 52 61.5
VMungo0540G2226 Vigna mungo HOM05D001104 ORTHO05D006535 8.3e-08 61.2 55 50.9
FAN01G0668 Fragaria x ananassa HOM05D001104 ORTHO05D006535 1.8e-07 60.1 54 53.7
MBI02_g24293_MAGBIO Magnolia biondii HOM05D001104 ORTHO05D006535 7.0e-07 58.2 51 52.9
PSO017G5739 Papaver somniferum HOM05D001104 ORTHO05D006535 9.2e-07 57.8 57 54.4
PSO396G0001 Papaver somniferum HOM05D001104 ORTHO05D006535 9.2e-07 57.8 57 54.4
PSO675G4930 Papaver somniferum HOM05D001104 ORTHO05D006535 2.0e-06 56.6 55 52.7
EL10Ac8g19654 Beta vulgaris HOM05D001104 ORTHO05D006535 3.5e-06 55.8 60 46.7
CBR_g8333 Chara braunii HOM05D001104 ORTHO05D006535 5.9e-06 55.1 55 49.1


User provided reference genes

Program Settings