Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g03487 Brassica carinata HOM05D004731 ORTHO05D005577 0.0e+00 1123.2 554 100.0
C03p51920 Brassica napus HOM05D004731 ORTHO05D005577 0.0e+00 1100.5 566 97.0
A03p42440 Brassica napus HOM05D004731 ORTHO05D005577 0.0e+00 1099.3 566 96.8
BraA03t13397Z Brassica rapa HOM05D004731 ORTHO05D005577 0.0e+00 1097.4 566 96.6
Thhalv10022122m.g Eutrema salsugineum HOM05D004731 ORTHO05D005577 0.0e+00 1092.4 566 95.9
BcaB06g26278 Brassica carinata HOM05D004731 ORTHO05D005577 0.0e+00 1091.6 566 95.9
A05p27010 Brassica napus HOM05D004731 ORTHO05D005577 0.0e+00 1091.3 566 95.9
BraA05t21584Z Brassica rapa HOM05D004731 ORTHO05D005577 0.0e+00 1090.1 566 95.8
BcaC05g28137 Brassica carinata HOM05D004731 ORTHO05D005577 0.0e+00 1089.7 566 95.8
BolC5t32904H Brassica oleracea HOM05D004731 ORTHO05D005577 0.0e+00 1089.3 566 95.8
Carub.0003s2177 Capsella rubella HOM05D004731 ORTHO05D005577 0.0e+00 1080.1 566 94.7
BcaB04g20567 Brassica carinata HOM05D004731 ORTHO05D005577 0.0e+00 1076.6 566 94.3
Sp3g19730 Schrenkiella parvula HOM05D004731 ORTHO05D005577 1.1e-311 1072.4 566 94.0
AL3G35840 Arabidopsis lyrata HOM05D004731 ORTHO05D005577 1.9e-311 1071.6 566 93.3
CARHR097670 Cardamine hirsuta HOM05D004731 ORTHO05D005577 1.7e-310 1068.5 566 93.5
AT3G21720 Arabidopsis thaliana HOM05D004731 ORTHO05D005577 3.8e-310 1067.4 566 92.9
Aa31LG8G8350 Aethionema arabicum HOM05D004731 ORTHO05D005577 1.3e-302 1042.3 566 90.5
THA.LOC104808494 Tarenaya hassleriana HOM05D004731 ORTHO05D005577 4.4e-295 1017.3 567 87.1
BolC3t17478H Brassica oleracea HOM05D004731 ORTHO05D005577 1.8e-288 995.3 554 90.8
Cfa014429 Carpinus fangiana HOM05D004731 ORTHO05D005577 2.5e-282 974.9 566 83.4
Gorai.013G099800 Gossypium raimondii HOM05D004731 ORTHO05D005577 6.2e-281 970.3 566 82.7
Eucgr.K00802 Eucalyptus grandis HOM05D004731 ORTHO05D005577 2.4e-280 968.4 566 82.9
Gohir.A13G093600 Gossypium hirsutum HOM05D004731 ORTHO05D005577 6.9e-280 966.8 566 82.3
Sed0023583 Sechium edule HOM05D004731 ORTHO05D005577 1.5e-279 965.7 566 82.9
Thecc.02G312600 Theobroma cacao HOM05D004731 ORTHO05D005577 7.6e-279 963.4 566 81.8
DCAR_012950 Daucus carota HOM05D004731 ORTHO05D005577 2.9e-278 961.4 565 82.5
CsaV3_2G035120 Cucumis sativus L. HOM05D004731 ORTHO05D005577 3.8e-278 961.1 566 82.3
TWI36G0780 Tripterygium wilfordii HOM05D004731 ORTHO05D005577 4.9e-278 960.7 566 82.5
Cpa.g.sc8.225 Carica papaya HOM05D004731 ORTHO05D005577 8.4e-278 959.9 566 82.2
PGR142G3606 Punica granatum HOM05D004731 ORTHO05D005577 1.1e-277 959.5 566 82.7
ClCG02G008490 Citrullus lanatus HOM05D004731 ORTHO05D005577 3.2e-277 958.0 573 81.7
MD09G1106500 Malus domestica HOM05D004731 ORTHO05D005577 3.2e-277 958.0 566 82.2
Atru.chr6.3161 Acer truncatum HOM05D004731 ORTHO05D005577 3.5e-276 954.5 566 81.6
Aqoxy4G01979 Aquilegia oxysepala HOM05D004731 ORTHO05D005577 4.6e-276 954.1 566 80.9
Manes.12G076000 Manihot esculenta HOM05D004731 ORTHO05D005577 4.6e-276 954.1 566 81.3
QL08p033580 Quercus lobata HOM05D004731 ORTHO05D005577 6.0e-276 953.7 565 81.8
Prupe.3G219100 Prunus persica HOM05D004731 ORTHO05D005577 1.3e-275 952.6 566 81.6
CiPaw.03G162000 Carya illinoinensis HOM05D004731 ORTHO05D005577 1.8e-275 952.2 566 81.6
Potri.007G122900 Populus trichocarpa HOM05D004731 ORTHO05D005577 3.9e-275 951.0 566 81.3
Actinidia09705 Actinidia chinensis HOM05D004731 ORTHO05D005577 1.5e-274 949.1 566 81.1
Potri.017G036900 Populus trichocarpa HOM05D004731 ORTHO05D005577 1.9e-274 948.7 566 81.6
Ciclev10014655m.g Citrus clementina HOM05D004731 ORTHO05D005577 3.3e-274 948.0 566 81.1
CSS0029719 Camellia sinensis var. sinensis HOM05D004731 ORTHO05D005577 7.4e-274 946.8 566 80.6
PSO675G8406 Papaver somniferum HOM05D004731 ORTHO05D005577 9.6e-274 946.4 566 81.4
Gohir.A03G109600 Gossypium hirsutum HOM05D004731 ORTHO05D005577 1.3e-273 946.0 566 80.7
PSO541G0248 Papaver somniferum HOM05D004731 ORTHO05D005577 1.6e-273 945.7 566 81.3
Nitab4.5_0010201g0030 Nicotiana tabacum HOM05D004731 ORTHO05D005577 2.1e-273 945.3 566 80.0
RcHm_v2.0_Chr2g0159821 Rosa chinensis HOM05D004731 ORTHO05D005577 2.1e-273 945.3 566 80.7
CANSAT64G0826 Cannabis sativa HOM05D004731 ORTHO05D005577 2.8e-273 944.9 566 81.3
QL08p033547 Quercus lobata HOM05D004731 ORTHO05D005577 2.8e-273 944.9 566 81.3
TAR624G1207 Trochodendron aralioides HOM05D004731 ORTHO05D005577 3.7e-273 944.5 566 80.9
Nitab4.5_0001176g0080 Nicotiana tabacum HOM05D004731 ORTHO05D005577 4.8e-273 944.1 566 79.9
Rhsim06G0159200 Rhododendron simsii HOM05D004731 ORTHO05D005577 1.1e-272 943.0 591 78.2
FvH4_6g43440 Fragaria vesca HOM05D004731 ORTHO05D005577 1.4e-272 942.6 566 80.0
Sopen07g026110 Solanum pennellii HOM05D004731 ORTHO05D005577 3.1e-272 941.4 566 79.9
Manes.13G072200 Manihot esculenta HOM05D004731 ORTHO05D005577 9.0e-272 939.9 566 80.7
Migut.M00410 Erythranthe guttata HOM05D004731 ORTHO05D005577 1.5e-271 939.1 566 79.5
Gohir.D02G134400 Gossypium hirsutum HOM05D004731 ORTHO05D005577 2.6e-271 938.3 566 79.7
Lsat_1_v5_gn_8_128420 Lactuca sativa HOM05D004731 ORTHO05D005577 3.4e-271 937.9 565 80.0
Peaxi162Scf00007g01115 Petunia axillaris HOM05D004731 ORTHO05D005577 5.8e-271 937.2 566 79.3
HanXRQChr04g0110581 Helianthus annuus HOM05D004731 ORTHO05D005577 7.6e-271 936.8 566 79.0
Lj1P757T15 Lonicera japonica HOM05D004731 ORTHO05D005577 7.6e-271 936.8 567 80.8
Oeu011087.1 Olea europaea HOM05D004731 ORTHO05D005577 1.0e-270 936.4 566 79.3
PGSC0003DMG400025487 Solanum tuberosum HOM05D004731 ORTHO05D005577 2.2e-270 935.3 566 79.0
arahy.Tifrunner.gnm1.ann1.TKPZ56 Arachis hypogaea HOM05D004731 ORTHO05D005577 3.8e-270 934.5 566 79.0
Gorai.005G150300 Gossypium raimondii HOM05D004731 ORTHO05D005577 3.8e-270 934.5 566 79.3
Lalb_Chr19g0135731 Lupinus albus HOM05D004731 ORTHO05D005577 8.4e-270 933.3 566 79.7
arahy.Tifrunner.gnm1.ann1.X0NGMJ Arachis hypogaea HOM05D004731 ORTHO05D005577 1.9e-269 932.2 566 78.8
TWI75G0012 Tripterygium wilfordii HOM05D004731 ORTHO05D005577 3.2e-269 931.4 564 81.4
DCAR_021183 Daucus carota HOM05D004731 ORTHO05D005577 4.2e-269 931.0 565 79.3
vmacro12222 Vaccinium macrocarpon HOM05D004731 ORTHO05D005577 7.1e-269 930.2 566 80.2
FAN05G5305 Fragaria x ananassa HOM05D004731 ORTHO05D005577 1.2e-268 929.5 587 76.8
Hund24408 Selenicereus undatus HOM05D004731 ORTHO05D005577 1.2e-268 929.5 568 79.0
C05p41690 Brassica napus HOM05D004731 ORTHO05D005577 2.1e-268 928.7 485 95.3
Nn1g07047 Nelumbo nucifera HOM05D004731 ORTHO05D005577 3.5e-268 927.9 567 78.8
DCAR_019287 Daucus carota HOM05D004731 ORTHO05D005577 6.0e-268 927.2 566 79.2
Glyma.12G100500 Glycine max HOM05D004731 ORTHO05D005577 6.0e-268 927.2 566 78.8
Phvul.011G106801 Phaseolus vulgaris HOM05D004731 ORTHO05D005577 7.9e-268 926.8 566 78.4
VMungo1127G2299 Vigna mungo HOM05D004731 ORTHO05D005577 1.3e-267 926.0 566 78.4
FAN09G0477 Fragaria x ananassa HOM05D004731 ORTHO05D005577 4.3e-266 921.0 614 74.3
Glyma.06G303200 Glycine max HOM05D004731 ORTHO05D005577 7.4e-266 920.2 567 78.5
FAN02G3012 Fragaria x ananassa HOM05D004731 ORTHO05D005577 1.8e-264 915.6 613 73.2
EL10Ac8g18891 Beta vulgaris HOM05D004731 ORTHO05D005577 4.1e-264 914.4 568 77.8
MELO3C019243.2 Cucumis melo HOM05D004731 ORTHO05D005577 1.2e-263 912.9 534 82.6
FAN14G3935 Fragaria x ananassa HOM05D004731 ORTHO05D005577 5.9e-263 910.6 635 71.5
SalBow7G1245 Salvia bowleyana HOM05D004731 ORTHO05D005577 1.3e-262 909.4 534 81.1
AUR62028388 Chenopodium quinoa HOM05D004731 ORTHO05D005577 2.2e-262 908.7 568 77.6
MBI02_g10107_MAGBIO Magnolia biondii HOM05D004731 ORTHO05D005577 2.2e-262 908.7 566 78.8
Medtr4g046757 Medicago truncatula HOM05D004731 ORTHO05D005577 6.5e-262 907.1 567 76.5
AUR62039771 Chenopodium quinoa HOM05D004731 ORTHO05D005577 5.5e-261 904.0 568 77.1
Haze_12887 Corylus avellana HOM05D004731 ORTHO05D005577 5.5e-261 904.0 576 77.6
Lj3g0018668 Lotus japonicus HOM05D004731 ORTHO05D005577 1.6e-260 902.5 566 77.0
Nn1g03615 Nelumbo nucifera HOM05D004731 ORTHO05D005577 2.3e-259 898.7 565 76.5
Psat7g179960 Pisum sativum HOM05D004731 ORTHO05D005577 1.5e-258 896.0 566 76.5
Cc05_g04940 Coffea canephora HOM05D004731 ORTHO05D005577 3.3e-258 894.8 566 76.7
HPP92_012326 Vanilla planifolia HOM05D004731 ORTHO05D005577 7.4e-258 893.6 565 76.1
Sabra07G0099600 Salix brachista HOM05D004731 ORTHO05D005577 2.2e-257 892.1 566 77.4
ATR0697G058 Amborella trichopoda HOM05D004731 ORTHO05D005577 1.4e-256 889.4 558 78.0
ATR0697G164 Amborella trichopoda HOM05D004731 ORTHO05D005577 5.3e-256 887.5 558 77.1
MD17G1094300 Malus domestica HOM05D004731 ORTHO05D005577 9.1e-256 886.7 520 82.3
ATR0697G137 Amborella trichopoda HOM05D004731 ORTHO05D005577 8.5e-254 880.2 544 77.9
Ca_27733_v3 Cicer arietinum L. HOM05D004731 ORTHO05D005577 1.4e-253 879.4 576 73.4
Os07g0529000 Oryza sativa ssp. japonica HOM05D004731 ORTHO05D005577 4.2e-253 877.9 566 75.6
Nitab4.5_0003509g0010 Nicotiana tabacum HOM05D004731 ORTHO05D005577 1.0e-251 873.2 566 74.7
ECA233G0706 Erigeron canadensis HOM05D004731 ORTHO05D005577 1.7e-249 865.9 525 80.2
Ah.09g228590 Amaranthus hybridus HOM05D004731 ORTHO05D005577 1.2e-247 859.8 569 73.8
Zm00001eb323090 Zea mays HOM05D004731 ORTHO05D005577 3.4e-247 858.2 567 74.4
Phvul.011G105500 Phaseolus vulgaris HOM05D004731 ORTHO05D005577 2.3e-243 845.5 516 78.5
SEGI_12486 Sequoiadendron giganteum HOM05D004731 ORTHO05D005577 5.2e-243 844.3 567 72.5
SEGI_22707 Sequoiadendron giganteum HOM05D004731 ORTHO05D005577 3.3e-242 841.6 566 73.3
SGA_v2.0_scaffold34G13870 Striga asiatica HOM05D004731 ORTHO05D005577 2.4e-240 835.5 536 76.3
Gohir.D13G087500 Gossypium hirsutum HOM05D004731 ORTHO05D005577 6.5e-238 827.4 483 82.2
BcaB04g20569 Brassica carinata HOM05D004731 ORTHO05D005577 1.9e-229 799.3 424 94.1
CDE05G2280 Ceratophyllum demersum HOM05D004731 ORTHO05D005577 3.0e-219 765.4 468 78.6
SMO196G0149 Selaginella moellendorffii HOM05D004731 ORTHO05D005577 6.3e-217 757.7 566 66.4
Pp3c7_2440 Physcomitrium patens HOM05D004731 ORTHO05D005577 1.2e-210 736.9 541 66.9
Pp3c7_2470 Physcomitrium patens HOM05D004731 ORTHO05D005577 1.2e-210 736.9 541 66.9
CBR_g8290 Chara braunii HOM05D004731 ORTHO05D005577 2.9e-209 732.3 553 66.0
AagrBONN_evm.TU.Sc2ySwM_344.2376 Anthoceros agrestis HOM05D004731 ORTHO05D005577 6.0e-207 724.5 538 66.0
Mapoly0115s0061 Marchantia polymorpha HOM05D004731 ORTHO05D005577 7.0e-200 701.0 541 63.6
Mapoly0023s0108 Marchantia polymorpha HOM05D004731 ORTHO05D005577 6.6e-198 694.5 540 62.2
CSS0044333 Camellia sinensis var. sinensis HOM05D004731 ORTHO05D005577 1.7e-193 679.9 425 77.4
Dinv39693 Davidia involucrata HOM05D004731 ORTHO05D005577 3.2e-192 675.6 423 78.3
GSVIVG01030608001 Vitis vinifera HOM05D004731 ORTHO05D005577 1.0e-174 617.5 566 59.4
Sc06g0009530 Simmondsia chinensis HOM05D004731 ORTHO05D005577 1.3e-161 573.9 355 79.4
Cfa025720 Carpinus fangiana HOM05D004731 ORTHO05D005577 3.8e-161 572.4 540 55.7
Dinv02741 Davidia involucrata HOM05D004731 ORTHO05D005577 3.0e-150 536.2 328 80.5
CAN.G921.14 Capsicum annuum HOM05D004731 ORTHO05D005577 1.5e-146 523.9 320 75.9
CDE11G1033 Ceratophyllum demersum HOM05D004731 ORTHO05D005577 4.6e-143 512.3 306 82.4
BcaB04g20563 Brassica carinata HOM05D004731 ORTHO05D005577 7.7e-130 468.4 332 77.4
Cfa027059 Carpinus fangiana HOM05D004731 ORTHO05D005577 1.0e-129 468.0 538 44.8
unitig_899.g15245 Utricularia gibba HOM05D004731 ORTHO05D005577 5.9e-114 415.6 254 74.8
Lalb_Chr03g0028811 Lupinus albus HOM05D004731 ORTHO05D005577 2.6e-109 400.2 258 70.9
unitig_899.g15246 Utricularia gibba HOM05D004731 ORTHO05D005577 2.0e-106 390.6 231 82.3
CDE11G0460 Ceratophyllum demersum HOM05D004731 ORTHO05D005577 6.8e-94 349.0 235 72.8
FAN14G1020 Fragaria x ananassa HOM05D004731 ORTHO05D005577 4.3e-88 329.7 173 89.6
Peaxi162Scf00932g00022 Petunia axillaris HOM05D004731 ORTHO05D005577 7.8e-82 308.9 330 52.4
Lalb_Chr03g0028821 Lupinus albus HOM05D004731 ORTHO05D005577 8.3e-76 288.9 160 85.6
Dinv02740 Davidia involucrata HOM05D004731 ORTHO05D005577 6.2e-71 272.7 186 71.0
HPP92_012387 Vanilla planifolia HOM05D004731 ORTHO05D005577 3.1e-70 270.4 152 83.6
COL.COLO4_27682 Corchorus olitorius HOM05D004731 ORTHO05D005577 1.2e-69 268.5 187 70.6
BcaB04g20565 Brassica carinata HOM05D004731 ORTHO05D005577 6.6e-65 252.7 147 90.5
BolC1t04201H Brassica oleracea HOM05D004731 ORTHO05D005577 1.9e-59 234.6 115 96.5
Cre06.g282800 Chlamydomonas reinhardtii HOM05D004731 ORTHO05D005577 3.3e-56 223.8 524 30.2
Haze_27171 Corylus avellana HOM05D004731 ORTHO05D005577 1.4e-54 218.4 518 30.3
COL.COLO4_27683 Corchorus olitorius HOM05D004731 ORTHO05D005577 2.4e-54 217.6 107 95.3
BcaB04g20566 Brassica carinata HOM05D004731 ORTHO05D005577 1.0e-49 202.2 123 81.3
HPP92_012388 Vanilla planifolia HOM05D004731 ORTHO05D005577 5.5e-43 179.9 123 73.2
BcaB04g20564 Brassica carinata HOM05D004731 ORTHO05D005577 9.3e-43 179.1 127 70.9
HPP92_012390 Vanilla planifolia HOM05D004731 ORTHO05D005577 9.0e-30 136.0 83 79.5
CDE05G2484 Ceratophyllum demersum HOM05D004731 ORTHO05D005577 1.8e-17 95.1 83 65.1
HPP92_012389 Vanilla planifolia HOM05D004731 ORTHO05D005577 6.3e-15 86.7 58 63.8
BcaB04g20568 Brassica carinata HOM05D004731 ORTHO05D005577 1.1e-14 85.9 38 97.4
TPR.G275 Trifolium pratense HOM05D004731 ORTHO05D005577 9.1e-14 82.8 53 73.6
Nn1g03620 Nelumbo nucifera HOM05D004731 ORTHO05D005577 4.4e-08 63.9 28 96.4


User provided reference genes

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