Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g03449 Brassica carinata HOM05D001916 ORTHO05D027536 2.6e-65 251.9 129 100.0
BolC3t21563H Brassica oleracea HOM05D063372 ORTHO05D027536 3.2e-18 95.5 81 67.9
BcaC01g03385 Brassica carinata HOM05D063372 ORTHO05D027536 3.3e-15 85.5 81 64.2
BcaNung03449 Brassica carinata HOM05D001916 ORTHO05D003272 1.6e-14 83.2 95 50.5
A03p54520 Brassica napus HOM05D001916 ORTHO05D003272 2.8e-14 82.4 95 51.6
BcaNung01067 Brassica carinata HOM05D001916 ORTHO05D003272 1.8e-13 79.7 95 48.4
BcaNung03177 Brassica carinata HOM05D001916 ORTHO05D003272 1.8e-13 79.7 95 49.5
AL7G29840 Arabidopsis lyrata HOM05D001916 ORTHO05D003272 2.3e-13 79.3 95 50.5
BcaC06g35158 Brassica carinata HOM05D001916 ORTHO05D003272 4.0e-13 78.6 116 45.7
A01p14880 Brassica napus HOM05D001916 ORTHO05D003272 4.0e-13 78.6 100 49.0
C01p18550 Brassica napus HOM05D001916 ORTHO05D003272 4.0e-13 78.6 96 50.0
BolC1t01780H Brassica oleracea HOM05D001916 ORTHO05D003272 4.0e-13 78.6 96 50.0
BraA01t01428Z Brassica rapa HOM05D001916 ORTHO05D003272 4.0e-13 78.6 93 51.6
BraA01t01429Z Brassica rapa HOM05D001916 ORTHO05D003272 4.0e-13 78.6 100 49.0
A01p14860 Brassica napus HOM05D001916 ORTHO05D003272 5.2e-13 78.2 93 51.6
Carub.0007s1759 Capsella rubella HOM05D001916 ORTHO05D003272 5.2e-13 78.2 95 49.5
Thhalv10025590m.g Eutrema salsugineum HOM05D001916 ORTHO05D003272 5.2e-13 78.2 96 51.0
Sp7g21490 Schrenkiella parvula HOM05D001916 ORTHO05D003272 6.8e-13 77.8 95 49.5
BolC3t17026H Brassica oleracea HOM05D000349 ORTHO05D001782 1.2e-12 77.0 62 74.2
AT4G23570 Arabidopsis thaliana HOM05D001916 ORTHO05D003272 2.6e-12 75.9 95 49.5
C01p18570 Brassica napus HOM05D001916 ORTHO05D003272 1.3e-11 73.6 100 46.0
BolC1t01784H Brassica oleracea HOM05D001916 ORTHO05D003272 1.3e-11 73.6 100 46.0
AL6G45470 Arabidopsis lyrata HOM05D001916 ORTHO05D003272 2.2e-11 72.8 95 45.3
Atru.chr9.2108 Acer truncatum HOM05D001916 ORTHO05D003272 2.9e-11 72.4 124 37.9
THA.LOC104814751 Tarenaya hassleriana HOM05D001916 ORTHO05D003272 3.7e-11 72.0 95 45.3
BcaB01g01623 Brassica carinata HOM05D001916 ORTHO05D003272 4.9e-11 71.6 95 45.3
BcaC01g01488 Brassica carinata HOM05D000233 ORTHO05D000020 4.9e-11 71.6 37 94.6
AT4G11260 Arabidopsis thaliana HOM05D001916 ORTHO05D003272 6.4e-11 71.2 95 44.2
BcaC04g21121 Brassica carinata HOM05D001916 ORTHO05D003272 6.4e-11 71.2 95 45.3
A09p27900 Brassica napus HOM05D001916 ORTHO05D003272 6.4e-11 71.2 95 45.3
C09p35370 Brassica napus HOM05D001916 ORTHO05D003272 6.4e-11 71.2 95 45.3
BolC9t56378H Brassica oleracea HOM05D001916 ORTHO05D003272 6.4e-11 71.2 95 45.3
BraA09t38359Z Brassica rapa HOM05D001916 ORTHO05D003272 6.4e-11 71.2 95 45.3
BcaC01g04633 Brassica carinata HOM05D001916 ORTHO05D003272 8.3e-11 70.9 94 45.7
A03p29330 Brassica napus HOM05D001916 ORTHO05D003272 1.1e-10 70.5 95 45.3
C03p35430 Brassica napus HOM05D001916 ORTHO05D003272 1.1e-10 70.5 95 45.3
BolC3t15856H Brassica oleracea HOM05D001916 ORTHO05D003272 1.1e-10 70.5 95 45.3
BraA03t12130Z Brassica rapa HOM05D001916 ORTHO05D003272 1.1e-10 70.5 95 45.3
BcaC09g50973 Brassica carinata HOM05D001916 ORTHO05D003272 1.9e-10 69.7 95 46.3
BcaC09g50975 Brassica carinata HOM05D001916 ORTHO05D003272 1.9e-10 69.7 88 48.9
Carub.0006s3011 Capsella rubella HOM05D001916 ORTHO05D003272 1.9e-10 69.7 95 45.3
CARHR255330 Cardamine hirsuta HOM05D001916 ORTHO05D003272 1.9e-10 69.7 95 44.2
Sp6g06190 Schrenkiella parvula HOM05D001916 ORTHO05D003272 1.9e-10 69.7 95 44.2
Thhalv10028764m.g Eutrema salsugineum HOM05D001916 ORTHO05D003272 7.0e-10 67.8 95 43.2
THA.LOC104813028 Tarenaya hassleriana HOM05D001916 ORTHO05D003272 7.0e-10 67.8 100 45.0
BcaB05g23846 Brassica carinata HOM05D001916 ORTHO05D003272 9.2e-10 67.4 95 43.2
Aa31LG6G6770 Aethionema arabicum HOM05D001916 ORTHO05D003272 2.7e-09 65.9 91 46.2
Aa31LG9G10930 Aethionema arabicum HOM05D001916 ORTHO05D003272 2.7e-09 65.9 95 44.2
BraA06t25112Z Brassica rapa HOM05D001916 ORTHO05D010495 2.7e-09 65.9 35 94.3
Atru.chr1.332 Acer truncatum HOM05D001916 ORTHO05D003272 3.5e-09 65.5 95 42.1
Atru.ctg97_1.49 Acer truncatum HOM05D001916 ORTHO05D003272 3.5e-09 65.5 95 42.1
CiPaw.12G018800 Carya illinoinensis HOM05D001916 ORTHO05D003272 3.5e-09 65.5 92 42.4
EL10Ac3g05391 Beta vulgaris HOM05D001916 ORTHO05D003272 1.3e-08 63.5 95 43.2
CDE04G2043 Ceratophyllum demersum HOM05D001916 ORTHO05D003272 2.3e-08 62.8 96 40.6
Ciclev10005190m.g Citrus clementina HOM05D001916 ORTHO05D003272 2.3e-08 62.8 94 42.6
Zm00001eb358660 Zea mays HOM05D001916 ORTHO05D003272 2.3e-08 62.8 102 39.2
BolC7t43640H Brassica oleracea HOM05D001916 ORTHO05D027536 3.0e-08 62.4 35 91.4
Lsat_1_v5_gn_2_131520 Lactuca sativa HOM05D001916 ORTHO05D003272 3.0e-08 62.4 94 39.4
TWI59G0580 Tripterygium wilfordii HOM05D001916 ORTHO05D003272 3.0e-08 62.4 94 43.6
Zm00001eb159420 Zea mays HOM05D001916 ORTHO05D003272 3.0e-08 62.4 101 39.6
CANSAT21G1399 Cannabis sativa HOM05D001916 ORTHO05D003272 5.0e-08 61.6 94 40.4
Sc19g0000960 Simmondsia chinensis HOM05D001916 ORTHO05D003272 5.0e-08 61.6 94 40.4
HanXRQChr14g0462581 Helianthus annuus HOM05D001916 ORTHO05D003272 6.6e-08 61.2 94 38.3
Medtr5g009930 Medicago truncatula HOM05D001916 ORTHO05D003272 6.6e-08 61.2 95 43.2
GSVIVG01028818001 Vitis vinifera HOM05D001916 ORTHO05D003272 6.6e-08 61.2 94 42.6
Migut.F00275 Erythranthe guttata HOM05D001916 ORTHO05D003272 8.6e-08 60.8 95 40.0
Lalb_Chr09g0320811 Lupinus albus HOM05D001916 ORTHO05D003272 8.6e-08 60.8 95 41.1
Actinidia27360 Actinidia chinensis HOM05D001916 ORTHO05D003272 1.1e-07 60.5 95 38.9
CANSAT21G0043 Cannabis sativa HOM05D001916 ORTHO05D003272 1.1e-07 60.5 94 39.4
AUR62021095 Chenopodium quinoa HOM05D001916 ORTHO05D003272 1.1e-07 60.5 95 40.0
AUR62031443 Chenopodium quinoa HOM05D001916 ORTHO05D003272 1.1e-07 60.5 95 40.0
Cc02_g02210 Coffea canephora HOM05D001916 ORTHO05D003272 1.1e-07 60.5 94 39.4
Eucgr.A02714 Eucalyptus grandis HOM05D001916 ORTHO05D003272 1.1e-07 60.5 103 39.8
Lj2g0006755 Lotus japonicus HOM05D001916 ORTHO05D003272 1.1e-07 60.5 125 36.0
Solyc06g036420.3 Solanum lycopersicum HOM05D001916 ORTHO05D003272 1.1e-07 60.5 92 43.5
vmacro06613 Vaccinium macrocarpon HOM05D001916 ORTHO05D003272 1.1e-07 60.5 99 39.4
Ah.07g206400 Amaranthus hybridus HOM05D001916 ORTHO05D003272 1.5e-07 60.1 95 42.1
CiPaw.06G004400 Carya illinoinensis HOM05D001916 ORTHO05D003272 1.5e-07 60.1 92 40.2
Dinv35270 Davidia involucrata HOM05D001916 ORTHO05D003272 1.5e-07 60.1 95 38.9
Phvul.002G160300 Phaseolus vulgaris HOM05D001916 ORTHO05D003272 1.5e-07 60.1 95 41.1
Prupe.2G302800 Prunus persica HOM05D001916 ORTHO05D003272 1.5e-07 60.1 93 45.2
LjContig00312_ERROPOS870357g0000946 Lotus japonicus HOM05D001916 ORTHO05D003272 1.9e-07 59.7 95 41.1
vmacro13977 Vaccinium macrocarpon HOM05D001916 ORTHO05D003272 1.9e-07 59.7 95 38.9
Phvul.004G104600 Phaseolus vulgaris HOM05D001916 ORTHO05D003272 2.5e-07 59.3 93 39.8
Os01g0624500 Oryza sativa ssp. japonica HOM05D001916 ORTHO05D003272 3.3e-07 58.9 102 38.2
Hund04803 Selenicereus undatus HOM05D001916 ORTHO05D003272 3.3e-07 58.9 95 38.9
Solyc03g007670.4 Solanum lycopersicum HOM05D001916 ORTHO05D003272 3.3e-07 58.9 92 42.4
Sopen03g003600 Solanum pennellii HOM05D001916 ORTHO05D003272 3.3e-07 58.9 92 42.4
Actinidia31845 Actinidia chinensis HOM05D001916 ORTHO05D003272 4.3e-07 58.5 95 41.1
MSTRG.8696 Avicennia marina HOM05D001916 ORTHO05D003272 4.3e-07 58.5 95 38.9
Glyma.16G176200 Glycine max HOM05D001916 ORTHO05D003272 4.3e-07 58.5 93 38.7
Sabra04G0047000 Salix brachista HOM05D001916 ORTHO05D003272 4.3e-07 58.5 93 39.8
SGA_v2.0_scaffold55G19713 Striga asiatica HOM05D001916 ORTHO05D003272 4.3e-07 58.5 95 42.1
CiPaw.12G088900 Carya illinoinensis HOM05D001916 ORTHO05D003272 5.6e-07 58.2 92 42.4
MELO3C006948.2 Cucumis melo HOM05D001916 ORTHO05D003272 5.6e-07 58.2 95 37.9
Hma1.2p1_1713F.1_g298910 Hydrangea macrophylla HOM05D001916 ORTHO05D003272 5.6e-07 58.2 95 38.9
MBI06_g33537_MAGBIO Magnolia biondii HOM05D001916 ORTHO05D003272 5.6e-07 58.2 96 37.5
Nitab4.5_0000472g0280 Nicotiana tabacum HOM05D001916 ORTHO05D003272 5.6e-07 58.2 92 42.4
Rhsim09G0201200 Rhododendron simsii HOM05D001916 ORTHO05D003272 5.6e-07 58.2 95 41.1
RcHm_v2.0_Chr1g0378891 Rosa chinensis HOM05D001916 ORTHO05D003272 5.6e-07 58.2 93 40.9
CAN.G204.27 Capsicum annuum HOM05D001916 ORTHO05D003272 7.3e-07 57.8 92 41.3
Dinv37592 Davidia involucrata HOM05D001916 ORTHO05D003272 7.3e-07 57.8 97 38.1
ECA238G4709 Erigeron canadensis HOM05D001916 ORTHO05D003272 7.3e-07 57.8 90 38.9
HanXRQChr13g0392421 Helianthus annuus HOM05D001916 ORTHO05D003272 7.3e-07 57.8 91 39.6
Rhsim07G0087100 Rhododendron simsii HOM05D001916 ORTHO05D003272 7.3e-07 57.8 94 38.3
Gohir.A12G253000 Gossypium hirsutum HOM05D001916 ORTHO05D003272 9.5e-07 57.4 97 38.1
Lj1C1007T6 Lonicera japonica HOM05D001916 ORTHO05D003272 9.5e-07 57.4 103 36.9
MD01G1210400 Malus domestica HOM05D001916 ORTHO05D003272 9.5e-07 57.4 92 38.0
TPR.G6657 Trifolium pratense HOM05D001916 ORTHO05D003272 9.5e-07 57.4 95 41.1
BraA06t25650Z Brassica rapa HOM05D001916 ORTHO05D015005 1.2e-06 57.0 77 49.4
Cfa012250 Carpinus fangiana HOM05D001916 ORTHO05D003272 1.2e-06 57.0 96 39.6
Cfa016307 Carpinus fangiana HOM05D001916 ORTHO05D003272 1.2e-06 57.0 92 42.4
CDE10G0454 Ceratophyllum demersum HOM05D001916 ORTHO05D003272 1.2e-06 57.0 96 37.5
Glyma.11G021000 Glycine max HOM05D001916 ORTHO05D003272 1.2e-06 57.0 95 40.0
Lsat_1_v5_gn_8_6441 Lactuca sativa HOM05D001916 ORTHO05D003272 1.2e-06 57.0 95 38.9
unitig_0.g2466 Utricularia gibba HOM05D001916 ORTHO05D003272 1.2e-06 57.0 91 41.8
vmacro09808 Vaccinium macrocarpon HOM05D001916 ORTHO05D003272 1.2e-06 57.0 95 41.1
ECA233G5919 Erigeron canadensis HOM05D001916 ORTHO05D003272 1.6e-06 56.6 94 37.2
Glyma.09G128800 Glycine max HOM05D001916 ORTHO05D003272 1.6e-06 56.6 143 28.7
Manes.02G016700 Manihot esculenta HOM05D001916 ORTHO05D003272 1.6e-06 56.6 97 38.1
Hund11708 Selenicereus undatus HOM05D001916 ORTHO05D003272 1.6e-06 56.6 95 38.9
PGR031G2632 Punica granatum HOM05D001916 ORTHO05D003272 2.1e-06 56.2 130 33.8
TWI14G0889 Tripterygium wilfordii HOM05D001916 ORTHO05D003272 2.1e-06 56.2 94 40.4
arahy.Tifrunner.gnm1.ann1.MU20M7 Arachis hypogaea HOM05D001916 ORTHO05D003272 2.8e-06 55.8 94 43.6
CANSAT21G1709 Cannabis sativa HOM05D001916 ORTHO05D003272 2.8e-06 55.8 136 30.9
Gohir.D12G255426 Gossypium hirsutum HOM05D001916 ORTHO05D003272 2.8e-06 55.8 97 37.1
Gorai.008G273400 Gossypium raimondii HOM05D001916 ORTHO05D003272 2.8e-06 55.8 97 37.1
Lj2A178T48 Lonicera japonica HOM05D001916 ORTHO05D003272 2.8e-06 55.8 148 31.1
VMungo0464G1486 Vigna mungo HOM05D001916 ORTHO05D003272 2.8e-06 55.8 93 38.7
FvH4_7g30490 Fragaria vesca HOM05D001916 ORTHO05D003272 3.6e-06 55.5 94 40.4
FAN06G1813 Fragaria x ananassa HOM05D001916 ORTHO05D003272 3.6e-06 55.5 94 40.4
FAN06G4606 Fragaria x ananassa HOM05D001916 ORTHO05D003272 3.6e-06 55.5 94 40.4
TAR375G0777 Trochodendron aralioides HOM05D001916 ORTHO05D003272 3.6e-06 55.5 97 38.1
CsaV3_3G017600 Cucumis sativus L. HOM05D001916 ORTHO05D003272 4.7e-06 55.1 95 37.9
DCAR_010650 Daucus carota HOM05D001916 ORTHO05D003272 4.7e-06 55.1 95 38.9
Nn1g01692 Nelumbo nucifera HOM05D001916 ORTHO05D003272 4.7e-06 55.1 95 36.8
Nitab4.5_0007653g0010 Nicotiana tabacum HOM05D001916 ORTHO05D003272 4.7e-06 55.1 92 40.2
QL09p012344 Quercus lobata HOM05D001916 ORTHO05D003272 4.7e-06 55.1 96 41.7
SalBow2G1297 Salvia bowleyana HOM05D001916 ORTHO05D003272 4.7e-06 55.1 95 41.1
PGSC0003DMG400028904 Solanum tuberosum HOM05D001916 ORTHO05D003272 4.7e-06 55.1 92 39.1
VMungo1215G1038 Vigna mungo HOM05D001916 ORTHO05D003272 4.7e-06 55.1 95 40.0
Actinidia03143 Actinidia chinensis HOM05D001916 ORTHO05D003272 6.2e-06 54.7 95 38.9
CSS0028210 Camellia sinensis var. sinensis HOM05D001916 ORTHO05D003272 6.2e-06 54.7 96 39.6
ClCG05G008510 Citrullus lanatus HOM05D001916 ORTHO05D003272 6.2e-06 54.7 94 37.2
Migut.F01077 Erythranthe guttata HOM05D001916 ORTHO05D003272 6.2e-06 54.7 96 38.5
Migut.F01079 Erythranthe guttata HOM05D001916 ORTHO05D003272 6.2e-06 54.7 96 38.5
Glyma.01G222400 Glycine max HOM05D001916 ORTHO05D003272 6.2e-06 54.7 95 38.9
Gohir.A08G085400 Gossypium hirsutum HOM05D001916 ORTHO05D003272 6.2e-06 54.7 96 35.4
Manes.06G153900 Manihot esculenta HOM05D001916 ORTHO05D003272 6.2e-06 54.7 94 39.4
Hma1.2p1_0327F.1_g126510 Hydrangea macrophylla HOM05D001916 ORTHO05D003272 8.1e-06 54.3 110 32.7
PGR042G1296 Punica granatum HOM05D001916 ORTHO05D003272 8.1e-06 54.3 94 40.4
Thecc.03G186400 Theobroma cacao HOM05D001916 ORTHO05D003272 8.1e-06 54.3 97 37.1


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