Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g03265 Brassica carinata HOM05D002028 ORTHO05D032026 8.4e-69 263.5 124 100.0
A05p03760 Brassica napus HOM05D002300 ORTHO05D002340 1.4e-44 183.0 129 72.9
BraA05t19363Z Brassica rapa HOM05D002042 ORTHO05D003928 1.2e-43 179.9 129 72.1
BcaC02g12396 Brassica carinata HOM05D002028 ORTHO05D032026 1.6e-43 179.5 129 70.5
C04p04460 Brassica napus HOM05D002300 ORTHO05D002340 2.1e-43 179.1 129 70.5
BolC4t22079H Brassica oleracea HOM05D002042 ORTHO05D002340 2.1e-43 179.1 129 70.5
Sp4g25520 Schrenkiella parvula HOM05D002028 ORTHO05D002474 6.9e-39 164.1 129 66.7
Thhalv10001381m.g Eutrema salsugineum HOM05D002028 ORTHO05D002474 2.9e-37 158.7 128 64.1
Carub.0004s2589 Capsella rubella HOM05D002028 ORTHO05D002474 3.2e-36 155.2 129 62.0
AT2G43420 Arabidopsis thaliana HOM05D002028 ORTHO05D002474 4.2e-36 154.8 129 63.6
CARHR138510 Cardamine hirsuta HOM05D002028 ORTHO05D002474 4.2e-36 154.8 129 62.8
AL4G42160 Arabidopsis lyrata HOM05D002028 ORTHO05D002474 5.5e-36 154.5 129 62.8
Aa31LG1G25170 Aethionema arabicum HOM05D002028 ORTHO05D002474 6.1e-35 151.0 129 62.8
C04p05220 Brassica napus HOM05D002679 ORTHO05D014105 5.1e-34 147.9 112 68.8
BcaC02g12322 Brassica carinata HOM05D002679 ORTHO05D014105 1.7e-32 142.9 111 65.8
BolC4t22163H Brassica oleracea HOM05D002028 ORTHO05D032026 2.2e-32 142.5 87 78.2
THA.LOC104802316 Tarenaya hassleriana HOM05D002028 ORTHO05D002474 8.0e-27 124.0 127 50.4
C03p54210 Brassica napus HOM05D002028 ORTHO05D040037 2.7e-22 109.0 110 52.7
Atru.chr4.1263 Acer truncatum HOM05D002028 ORTHO05D002474 2.1e-19 99.4 128 43.8
Gohir.D05G325200 Gossypium hirsutum HOM05D002028 ORTHO05D002474 3.4e-17 92.0 129 42.6
GSVIVG01010844001 Vitis vinifera HOM05D002028 ORTHO05D002474 3.4e-17 92.0 126 41.3
Thecc.04G175100 Theobroma cacao HOM05D002028 ORTHO05D002474 4.4e-17 91.7 124 43.5
TAR633G2663 Trochodendron aralioides HOM05D002028 ORTHO05D002474 1.7e-16 89.7 127 39.4
Glyma.12G050900 Glycine max HOM05D002028 ORTHO05D002474 3.7e-16 88.6 126 38.1
Sabra07G0106500 Salix brachista HOM05D002028 ORTHO05D002474 4.8e-16 88.2 125 41.6
Manes.04G038600 Manihot esculenta HOM05D002028 ORTHO05D002474 8.3e-16 87.4 128 39.1
Ciclev10019433m.g Citrus clementina HOM05D002028 ORTHO05D002474 1.1e-15 87.0 128 38.3
Nn1g09700 Nelumbo nucifera HOM05D002028 ORTHO05D002474 1.4e-15 86.7 125 41.6
TWI38G1413 Tripterygium wilfordii HOM05D002028 ORTHO05D002474 1.4e-15 86.7 128 40.6
COL.COLO4_10091 Corchorus olitorius HOM05D002028 ORTHO05D002474 1.8e-15 86.3 124 41.9
Medtr4g068110 Medicago truncatula HOM05D002028 ORTHO05D002474 3.1e-15 85.5 127 37.8
Glyma.11G126300 Glycine max HOM05D002028 ORTHO05D002474 4.1e-15 85.1 126 38.1
Cfa015196 Carpinus fangiana HOM05D002028 ORTHO05D002474 5.4e-15 84.7 128 38.3
Phvul.011G053200 Phaseolus vulgaris HOM05D002028 ORTHO05D002474 1.2e-14 83.6 126 38.9
Rhsim09G0022400 Rhododendron simsii HOM05D002028 ORTHO05D002474 1.2e-14 83.6 125 37.6
Gorai.011G139300 Gossypium raimondii HOM05D002028 ORTHO05D002474 1.6e-14 83.2 125 40.0
QL10p050908 Quercus lobata HOM05D002028 ORTHO05D002474 2.0e-14 82.8 128 38.3
VMungo1127G0975 Vigna mungo HOM05D002300 ORTHO05D002340 1.0e-13 80.5 126 36.5
Dinv44156 Davidia involucrata HOM05D002028 ORTHO05D002474 1.3e-13 80.1 128 39.8
CANSAT78G0997 Cannabis sativa HOM05D002028 ORTHO05D002474 1.7e-13 79.7 127 37.0
Lj3g0021053 Lotus japonicus HOM05D002028 ORTHO05D002474 2.9e-13 79.0 127 36.2
Psat7g209160 Pisum sativum HOM05D002028 ORTHO05D002474 3.8e-13 78.6 127 37.0
Duzib151G0202 Durio zibethinus HOM05D002028 ORTHO05D002474 5.0e-13 78.2 125 38.4
Sed0027421 Sechium edule HOM05D002028 ORTHO05D002474 5.0e-13 78.2 128 36.7
arahy.Tifrunner.gnm1.ann1.IU1E1F Arachis hypogaea HOM05D002028 ORTHO05D002474 6.5e-13 77.8 126 34.9
Gohir.D02G012200 Gossypium hirsutum HOM05D002028 ORTHO05D002474 6.5e-13 77.8 125 39.2
Gorai.005G015600 Gossypium raimondii HOM05D002028 ORTHO05D002474 6.5e-13 77.8 125 39.2
ClCG05G007220 Citrullus lanatus HOM05D002028 ORTHO05D002474 8.5e-13 77.4 124 35.5
CsaV3_3G015980 Cucumis sativus L. HOM05D002028 ORTHO05D002474 1.5e-12 76.6 124 35.5
MBI11_g10481_MAGBIO Magnolia biondii HOM05D002028 ORTHO05D002474 1.9e-12 76.3 128 37.5
Gohir.A02G011400 Gossypium hirsutum HOM05D002028 ORTHO05D002474 2.5e-12 75.9 125 37.6
Carub.0004s0612 Capsella rubella HOM05D002028 ORTHO05D002474 3.2e-12 75.5 124 37.1
ATR0681G186 Amborella trichopoda HOM05D002028 ORTHO05D002474 4.2e-12 75.1 124 35.5
Aqoxy2G04158 Aquilegia oxysepala HOM05D002028 ORTHO05D002474 5.5e-12 74.7 124 35.5
AT2G26260 Arabidopsis thaliana HOM05D002028 ORTHO05D002474 5.5e-12 74.7 124 36.3
CiPaw.01G096100 Carya illinoinensis HOM05D002028 ORTHO05D002474 5.5e-12 74.7 128 35.2
PSO210G2911 Papaver somniferum HOM05D002028 ORTHO05D002474 5.5e-12 74.7 128 32.8
Lj6C107G5 Lonicera japonica HOM05D002028 ORTHO05D002474 9.4e-12 73.9 131 36.6
THA.LOC104804450 Tarenaya hassleriana HOM05D002028 ORTHO05D002474 9.4e-12 73.9 124 35.5
CARHR115100 Cardamine hirsuta HOM05D002028 ORTHO05D002474 1.2e-11 73.6 124 36.3
MD04G1045100 Malus domestica HOM05D002028 ORTHO05D002474 1.2e-11 73.6 128 35.9
CSS0003399 Camellia sinensis var. sinensis HOM05D002028 ORTHO05D002474 2.1e-11 72.8 124 37.1
Lalb_Chr01g0003081 Lupinus albus HOM05D002028 ORTHO05D002474 2.1e-11 72.8 126 31.7
Zm00001eb102790 Zea mays HOM05D002028 ORTHO05D002474 2.1e-11 72.8 124 33.9
Lsat_1_v5_gn_9_42821 Lactuca sativa HOM05D002028 ORTHO05D002474 2.7e-11 72.4 125 34.4
Hund12409 Selenicereus undatus HOM05D002028 ORTHO05D002474 3.6e-11 72.0 125 38.4
AL4G18840 Arabidopsis lyrata HOM05D002028 ORTHO05D002474 4.7e-11 71.6 124 34.7
A09p55330 Brassica napus HOM05D002028 ORTHO05D002474 4.7e-11 71.6 124 33.9
C08p38270 Brassica napus HOM05D002028 ORTHO05D002474 4.7e-11 71.6 124 33.9
Cc03_g10730 Coffea canephora HOM05D002028 ORTHO05D002474 4.7e-11 71.6 124 36.3
HPP92_011698 Vanilla planifolia HOM05D002028 ORTHO05D002474 4.7e-11 71.6 126 34.1
BcaC07g40831 Brassica carinata HOM05D002028 ORTHO05D002474 6.1e-11 71.2 124 33.1
BolC8t51402H Brassica oleracea HOM05D002028 ORTHO05D002474 6.1e-11 71.2 124 33.1
BraA09t40936Z Brassica rapa HOM05D002028 ORTHO05D002474 6.1e-11 71.2 124 33.1
Sc25g0002620 Simmondsia chinensis HOM05D002028 ORTHO05D002474 6.1e-11 71.2 127 37.0
Cc03_g12100 Coffea canephora HOM05D002028 ORTHO05D002474 1.0e-10 70.5 127 34.6
Oeu015824.1 Olea europaea HOM05D002028 ORTHO05D002474 1.0e-10 70.5 124 35.5
PGR083G2683 Punica granatum HOM05D002028 ORTHO05D002474 1.0e-10 70.5 152 32.9
Aa31LG5G9540 Aethionema arabicum HOM05D002028 ORTHO05D002474 1.8e-10 69.7 124 33.9
CSS0001991 Camellia sinensis var. sinensis HOM05D002028 ORTHO05D002474 1.8e-10 69.7 124 33.9
CSS0029761 Camellia sinensis var. sinensis HOM05D002028 ORTHO05D002474 1.8e-10 69.7 133 36.1
arahy.Tifrunner.gnm1.ann1.GMG9S1 Arachis hypogaea HOM05D002028 ORTHO05D002474 2.3e-10 69.3 134 31.3
SEGI_01118 Sequoiadendron giganteum HOM05D002028 ORTHO05D002474 2.3e-10 69.3 123 36.6
SEGI_13992 Sequoiadendron giganteum HOM05D002028 ORTHO05D002474 2.3e-10 69.3 123 36.6
BcaB08g35278 Brassica carinata HOM05D002028 ORTHO05D002474 3.0e-10 68.9 124 32.3
Thhalv10001949m.g Eutrema salsugineum HOM05D002028 ORTHO05D002474 4.0e-10 68.6 124 33.9
Oeu032503.1 Olea europaea HOM05D002028 ORTHO05D002474 4.0e-10 68.6 124 33.1
Actinidia09349 Actinidia chinensis HOM05D002028 ORTHO05D002474 5.2e-10 68.2 127 34.6
ATR0743G142 Amborella trichopoda HOM05D002028 ORTHO05D002474 5.2e-10 68.2 123 35.8
Medtr3g105440 Medicago truncatula HOM05D002028 ORTHO05D002474 6.8e-10 67.8 124 28.2
Sp4g06500 Schrenkiella parvula HOM05D002028 ORTHO05D002474 6.8e-10 67.8 124 33.1
Lj3A82T19 Lonicera japonica HOM05D002028 ORTHO05D002474 8.8e-10 67.4 124 33.1
SGA_v2.0_scaffold147G36314 Striga asiatica HOM05D002028 ORTHO05D002474 8.8e-10 67.4 127 37.8
vmacro00630 Vaccinium macrocarpon HOM05D002028 ORTHO05D002474 8.8e-10 67.4 125 33.6
Actinidia34580 Actinidia chinensis HOM05D002028 ORTHO05D002474 1.2e-09 67.0 127 33.9
Os09g0516500 Oryza sativa ssp. japonica HOM05D002028 ORTHO05D002474 1.2e-09 67.0 126 30.2
FAN15G1351 Fragaria x ananassa HOM05D002028 ORTHO05D002474 1.5e-09 66.6 125 32.0
FAN20G3146 Fragaria x ananassa HOM05D002028 ORTHO05D002474 1.5e-09 66.6 125 32.0
FAN27G1780 Fragaria x ananassa HOM05D002028 ORTHO05D002474 1.5e-09 66.6 125 32.0
CSS0037664 Camellia sinensis var. sinensis HOM05D002028 ORTHO05D002474 2.0e-09 66.2 127 33.9
FvH4_2g36970 Fragaria vesca HOM05D002028 ORTHO05D002474 2.0e-09 66.2 125 31.2
CSS0013735 Camellia sinensis var. sinensis HOM05D002028 ORTHO05D002474 2.6e-09 65.9 124 33.9
Glyma.07G107800 Glycine max HOM05D002028 ORTHO05D002474 2.6e-09 65.9 124 31.5
Oeu015825.1 Olea europaea HOM05D002028 ORTHO05D002474 2.6e-09 65.9 123 33.3
RcHm_v2.0_Chr6g0304791 Rosa chinensis HOM05D002028 ORTHO05D002474 2.6e-09 65.9 124 33.1
unitig_92.g28203 Utricularia gibba HOM05D002042 ORTHO05D003928 2.6e-09 65.9 126 34.9
Solyc12g021130.2 Solanum lycopersicum HOM05D002028 ORTHO05D002474 4.4e-09 65.1 126 33.3
Sopen12g011000 Solanum pennellii HOM05D002028 ORTHO05D002474 4.4e-09 65.1 126 33.3
Thecc.09G065800 Theobroma cacao HOM05D002028 ORTHO05D002474 4.4e-09 65.1 124 33.1
ECA247G2946 Erigeron canadensis HOM05D002028 ORTHO05D002474 5.7e-09 64.7 127 30.7
Gohir.A06G080600 Gossypium hirsutum HOM05D002028 ORTHO05D002474 5.7e-09 64.7 127 34.6
Os03g0405000 Oryza sativa ssp. japonica HOM05D002028 ORTHO05D002474 5.7e-09 64.7 128 32.8
Hund07042 Selenicereus undatus HOM05D002028 ORTHO05D002474 5.7e-09 64.7 125 33.6
Atru.chr7.1819 Acer truncatum HOM05D002028 ORTHO05D002474 7.5e-09 64.3 124 32.3
CANSAT54G1311 Cannabis sativa HOM05D002028 ORTHO05D002474 7.5e-09 64.3 125 31.2
DCAR_027529 Daucus carota HOM05D002028 ORTHO05D002474 7.5e-09 64.3 125 33.6
Migut.A00328 Erythranthe guttata HOM05D002028 ORTHO05D002474 7.5e-09 64.3 124 33.9
Lsat_1_v5_gn_2_38560 Lactuca sativa HOM05D002028 ORTHO05D002474 9.8e-09 63.9 134 32.1
Peaxi162Scf00504g00036 Petunia axillaris HOM05D002028 ORTHO05D002474 9.8e-09 63.9 126 32.5
CAN.G8.33 Capsicum annuum HOM05D002028 ORTHO05D002474 1.3e-08 63.5 126 32.5
Cfa023532 Carpinus fangiana HOM05D002028 ORTHO05D002474 1.3e-08 63.5 124 34.7
Eucgr.C00745 Eucalyptus grandis HOM05D002028 ORTHO05D002474 1.3e-08 63.5 124 32.3
HanXRQChr13g0419901 Helianthus annuus HOM05D002028 ORTHO05D002474 1.3e-08 63.5 127 33.1
MSTRG.25846 Avicennia marina HOM05D002028 ORTHO05D002474 1.7e-08 63.2 124 32.3
Ciclev10007884m.g Citrus clementina HOM05D002028 ORTHO05D002474 1.7e-08 63.2 125 33.6
HanXRQChr14g0433391 Helianthus annuus HOM05D002028 ORTHO05D002474 1.7e-08 63.2 131 30.5
MBI13_g27165_MAGBIO Magnolia biondii HOM05D002028 ORTHO05D002474 1.7e-08 63.2 125 32.8
CDE06G0271 Ceratophyllum demersum HOM05D002028 ORTHO05D002474 2.2e-08 62.8 128 32.8
EL10Ac3g06012 Beta vulgaris HOM05D002028 ORTHO05D002474 4.9e-08 61.6 125 32.0
Potri.006G218400 Populus trichocarpa HOM05D002028 ORTHO05D002474 4.9e-08 61.6 124 32.3
Hund03176 Selenicereus undatus HOM05D002028 ORTHO05D002474 4.9e-08 61.6 120 31.7
Sopen02g010690 Solanum pennellii HOM05D002028 ORTHO05D002474 4.9e-08 61.6 125 32.0
Solyc02g032330.3 Solanum lycopersicum HOM05D002028 ORTHO05D002474 6.3e-08 61.2 125 32.0
Phvul.009G084200 Phaseolus vulgaris HOM05D002028 ORTHO05D002474 8.3e-08 60.8 127 29.1
TAR626G0442 Trochodendron aralioides HOM05D002028 ORTHO05D002474 8.3e-08 60.8 124 29.8
ECA232G0089 Erigeron canadensis HOM05D002028 ORTHO05D002474 1.4e-07 60.1 125 30.4
Ca_20800_v3 Cicer arietinum L. HOM05D002028 ORTHO05D002474 1.8e-07 59.7 75 38.7
VMungo1309G0101 Vigna mungo HOM05D002028 ORTHO05D002474 1.8e-07 59.7 124 26.6
Prupe.1G401700 Prunus persica HOM05D002028 ORTHO05D002474 2.4e-07 59.3 125 28.0
AUR62023839 Chenopodium quinoa HOM05D002028 ORTHO05D002474 3.1e-07 58.9 125 32.8
Dinv16952 Davidia involucrata HOM05D002028 ORTHO05D002474 3.1e-07 58.9 124 31.5
Dinv29527 Davidia involucrata HOM05D002028 ORTHO05D002474 3.1e-07 58.9 124 32.3
Sabra06G0168400 Salix brachista HOM05D002028 ORTHO05D002474 3.1e-07 58.9 124 31.5
TPR.G34253 Trifolium pratense HOM05D002028 ORTHO05D002474 4.1e-07 58.5 171 26.9
AUR62002350 Chenopodium quinoa HOM05D002028 ORTHO05D002474 5.4e-07 58.2 130 32.3
VMungo1309G2976 Vigna mungo HOM05D002028 ORTHO05D002474 5.4e-07 58.2 124 26.6
HanXRQChr02g0042821 Helianthus annuus HOM05D002028 ORTHO05D002474 7.0e-07 57.8 124 29.8
HanXRQChr02g0046911 Helianthus annuus HOM05D002028 ORTHO05D002474 7.0e-07 57.8 127 32.3
Ah.13g073780 Amaranthus hybridus HOM05D002028 ORTHO05D002474 9.2e-07 57.4 139 30.2
PSO063G0789 Papaver somniferum HOM05D002028 ORTHO05D002474 9.2e-07 57.4 127 32.3
Peaxi162Scf00198g01529 Petunia axillaris HOM05D002028 ORTHO05D002474 1.6e-06 56.6 123 30.1
CAN.G215.15 Capsicum annuum HOM05D002028 ORTHO05D002474 3.5e-06 55.5 124 30.6
FAN11G2953 Fragaria x ananassa HOM05D002028 ORTHO05D002474 5.9e-06 54.7 114 29.8


User provided reference genes

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