Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g03110 Brassica carinata HOM05D006166 ORTHO05D007663 3.1e-243 844.7 436 100.0
C03p55960 Brassica napus HOM05D006166 ORTHO05D007663 1.5e-242 842.4 436 99.8
BolC3t17880H Brassica oleracea HOM05D006166 ORTHO05D007663 5.5e-240 833.9 416 98.8
BcaB08g34548 Brassica carinata HOM05D006166 ORTHO05D007663 1.1e-224 783.1 416 93.3
BraA03t13646Z Brassica rapa HOM05D006166 ORTHO05D007663 4.7e-223 777.7 437 93.1
A03p45110 Brassica napus HOM05D006166 ORTHO05D007663 8.8e-222 773.5 414 93.5
AL3G45670 Arabidopsis lyrata HOM05D006166 ORTHO05D007663 2.1e-215 752.3 413 89.1
Sp3g27280 Schrenkiella parvula HOM05D006166 ORTHO05D007663 2.3e-214 748.8 416 88.5
Carub.0003s2824 Capsella rubella HOM05D006166 ORTHO05D007663 4.0e-214 748.0 414 87.7
AT2G13840 Arabidopsis thaliana HOM05D006166 ORTHO05D007663 8.2e-212 740.3 414 86.7
Thhalv10022694m.g Eutrema salsugineum HOM05D006166 ORTHO05D007663 6.5e-209 730.7 412 87.1
Aa31LG8G12460 Aethionema arabicum HOM05D006166 ORTHO05D007663 5.8e-181 637.9 479 67.0
THA.LOC104807167 Tarenaya hassleriana HOM05D006166 ORTHO05D007663 3.3e-168 595.5 421 69.4
CiPaw.06G152600 Carya illinoinensis HOM05D006166 ORTHO05D007663 1.3e-161 573.5 412 67.2
Manes.14G166700 Manihot esculenta HOM05D006166 ORTHO05D007663 2.3e-161 572.8 418 66.5
CiPaw.05G036600 Carya illinoinensis HOM05D006166 ORTHO05D007663 1.6e-159 566.6 417 66.7
Gorai.013G062000 Gossypium raimondii HOM05D006166 ORTHO05D007663 1.2e-157 560.5 420 64.5
TWI14G0161 Tripterygium wilfordii HOM05D006166 ORTHO05D007663 2.0e-157 559.7 417 65.7
QL11p020534 Quercus lobata HOM05D006166 ORTHO05D007663 5.8e-157 558.1 428 64.3
Thecc.02G140300 Theobroma cacao HOM05D006166 ORTHO05D007663 7.6e-157 557.8 420 65.2
Cfa005611 Carpinus fangiana HOM05D006166 ORTHO05D007663 9.9e-157 557.4 417 65.5
Gohir.A13G066600 Gossypium hirsutum HOM05D006166 ORTHO05D007663 1.9e-155 553.1 420 63.8
Potri.001G206400 Populus trichocarpa HOM05D006166 ORTHO05D007663 1.2e-154 550.4 405 65.4
MELO3C018652.2 Cucumis melo HOM05D006166 ORTHO05D007663 2.1e-154 549.7 411 64.5
RcHm_v2.0_Chr2g0123601 Rosa chinensis HOM05D006166 ORTHO05D007663 2.1e-154 549.7 417 64.0
Sabra01G0159700 Salix brachista HOM05D006166 ORTHO05D007663 2.7e-154 549.3 406 65.3
Sabra01G0159900 Salix brachista HOM05D006166 ORTHO05D007663 2.7e-154 549.3 406 65.3
CsaV3_7G006420 Cucumis sativus L. HOM05D006166 ORTHO05D007663 6.0e-154 548.1 413 64.2
COL.COLO4_24968 Corchorus olitorius HOM05D006166 ORTHO05D007663 1.0e-153 547.4 409 64.5
Duzib248G0370 Durio zibethinus HOM05D006166 ORTHO05D007663 1.7e-153 546.6 404 66.1
FvH4_1g25470 Fragaria vesca HOM05D006166 ORTHO05D007663 3.0e-153 545.8 417 63.8
Lalb_Chr10g0097721 Lupinus albus HOM05D006166 ORTHO05D007663 3.0e-153 545.8 404 65.6
FAN19G2366 Fragaria x ananassa HOM05D006166 ORTHO05D007663 5.1e-153 545.0 417 63.8
VMungo0251G2633 Vigna mungo HOM05D006166 ORTHO05D007663 8.7e-153 544.3 415 64.3
Manes.06G010300 Manihot esculenta HOM05D006166 ORTHO05D007663 1.5e-152 543.5 410 63.4
ClCG09G015330 Citrullus lanatus HOM05D006166 ORTHO05D007663 1.9e-152 543.1 410 63.9
Glyma.08G073700 Glycine max HOM05D006166 ORTHO05D007663 2.5e-152 542.7 419 63.2
FAN26G0367 Fragaria x ananassa HOM05D006166 ORTHO05D007663 3.3e-152 542.3 417 63.3
FAN28G2956 Fragaria x ananassa HOM05D006166 ORTHO05D007663 3.3e-152 542.3 417 63.3
Prupe.8G062500 Prunus persica HOM05D006166 ORTHO05D007663 3.3e-152 542.3 417 64.0
arahy.Tifrunner.gnm1.ann1.KS83Z6 Arachis hypogaea HOM05D006166 ORTHO05D007663 5.6e-152 541.6 415 63.4
Duzib132G0630 Durio zibethinus HOM05D006166 ORTHO05D007663 7.3e-152 541.2 419 64.7
Phvul.002G207800 Phaseolus vulgaris HOM05D006166 ORTHO05D007663 7.3e-152 541.2 416 63.2
Ciclev10028390m.g Citrus clementina HOM05D006166 ORTHO05D007663 8.1e-151 537.7 434 61.1
arahy.Tifrunner.gnm1.ann1.1L8CHD Arachis hypogaea HOM05D006166 ORTHO05D007663 1.1e-150 537.3 419 62.5
Lj4g0006983 Lotus japonicus HOM05D006166 ORTHO05D007663 1.1e-150 537.3 415 62.9
Glyma.05G118600 Glycine max HOM05D006166 ORTHO05D007663 1.4e-150 537.0 417 63.1
Peaxi162Scf00152g01019 Petunia axillaris HOM05D006166 ORTHO05D007663 1.8e-150 536.6 416 61.5
MD10G1052200 Malus domestica HOM05D006166 ORTHO05D007663 5.3e-150 535.0 414 62.6
Atru.chr6.1112 Acer truncatum HOM05D006166 ORTHO05D007663 6.9e-150 534.6 419 62.5
Rhsim11G0136200 Rhododendron simsii HOM05D006166 ORTHO05D007663 6.9e-150 534.6 412 63.3
TPR.G10454 Trifolium pratense HOM05D006166 ORTHO05D007663 9.0e-150 534.3 417 61.9
CSS0045599 Camellia sinensis var. sinensis HOM05D006166 ORTHO05D007663 1.2e-149 533.9 409 61.9
TAR628G0634 Trochodendron aralioides HOM05D006166 ORTHO05D007663 1.2e-149 533.9 414 62.1
Cpa.g.sc42.78 Carica papaya HOM05D006166 ORTHO05D007663 5.8e-149 531.6 398 64.1
Eucgr.G00773 Eucalyptus grandis HOM05D006166 ORTHO05D007663 5.8e-149 531.6 400 64.5
Nn1g05303 Nelumbo nucifera HOM05D006166 ORTHO05D007663 1.7e-148 530.0 414 62.6
Aqoxy6G00587 Aquilegia oxysepala HOM05D006166 ORTHO05D007663 2.2e-148 529.6 416 61.5
Ca_18343_v3 Cicer arietinum L. HOM05D006166 ORTHO05D007663 2.9e-148 529.3 412 61.2
Nn5g29064 Nelumbo nucifera HOM05D006166 ORTHO05D007663 2.9e-148 529.3 408 63.0
Medtr4g094258 Medicago truncatula HOM05D006166 ORTHO05D007663 3.8e-148 528.9 415 61.0
PGSC0003DMG400022942 Solanum tuberosum HOM05D006166 ORTHO05D007663 1.9e-147 526.6 403 61.3
Sed0015493 Sechium edule HOM05D006166 ORTHO05D007663 7.1e-147 524.6 407 62.2
Sopen11g020300 Solanum pennellii HOM05D006166 ORTHO05D007663 1.2e-146 523.9 403 60.5
vmacro01821 Vaccinium macrocarpon HOM05D006166 ORTHO05D007663 2.1e-146 523.1 411 62.3
Psat7g098480 Pisum sativum HOM05D006166 ORTHO05D007663 1.3e-145 520.4 413 60.3
CANSAT11G1721 Cannabis sativa HOM05D006166 ORTHO05D007663 1.1e-144 517.3 411 61.8
PGR042G2317 Punica granatum HOM05D006166 ORTHO05D007663 2.5e-144 516.2 412 61.4
Oeu007956.1 Olea europaea HOM05D006166 ORTHO05D007663 3.7e-143 512.3 409 59.7
HanXRQChr11g0338151 Helianthus annuus HOM05D006166 ORTHO05D007663 6.2e-143 511.5 401 61.1
Oeu026161.1 Olea europaea HOM05D006166 ORTHO05D007663 6.9e-142 508.1 412 59.5
Lsat_1_v5_gn_7_80840 Lactuca sativa HOM05D006166 ORTHO05D007663 2.0e-141 506.5 403 61.0
SalBow5G4894 Salvia bowleyana HOM05D006166 ORTHO05D007663 2.6e-141 506.1 404 59.9
Cc02_g21650 Coffea canephora HOM05D006166 ORTHO05D007663 1.0e-140 504.2 404 60.1
ECA236G4484 Erigeron canadensis HOM05D006166 ORTHO05D007663 8.4e-140 501.1 402 60.9
Actinidia00261 Actinidia chinensis HOM05D006166 ORTHO05D007663 1.4e-139 500.4 371 63.9
PSO133G0062 Papaver somniferum HOM05D006166 ORTHO05D007663 3.3e-136 489.2 394 61.2
Hund00054 Selenicereus undatus HOM05D006166 ORTHO05D007663 3.3e-136 489.2 404 58.2
Migut.B00617 Erythranthe guttata HOM05D006166 ORTHO05D007663 2.1e-135 486.5 425 56.2
MSTRG.16576 Avicennia marina HOM05D006166 ORTHO05D007663 2.8e-135 486.1 401 59.1
PSO541G1328 Papaver somniferum HOM05D006166 ORTHO05D007663 3.7e-135 485.7 394 60.7
ATR0564G319 Amborella trichopoda HOM05D006166 ORTHO05D007663 1.8e-134 483.4 378 63.0
AUR62013110 Chenopodium quinoa HOM05D006166 ORTHO05D007663 2.4e-134 483.0 414 57.2
Lj5A240G38 Lonicera japonica HOM05D006166 ORTHO05D007663 5.3e-134 481.9 447 54.8
SGA_v2.0_scaffold83G26295 Striga asiatica HOM05D006166 ORTHO05D007663 3.8e-132 475.7 454 52.9
EL10Ac9g21463 Beta vulgaris HOM05D006166 ORTHO05D007663 6.5e-132 474.9 405 56.8
unitig_26.g9064 Utricularia gibba HOM05D006166 ORTHO05D007663 3.2e-131 472.6 435 56.1
CARHR104670 Cardamine hirsuta HOM05D006166 ORTHO05D007663 7.1e-131 471.5 275 84.4
MBI05_g32464_MAGBIO Magnolia biondii HOM05D006166 ORTHO05D007663 9.3e-131 471.1 442 54.8
Hund06393 Selenicereus undatus HOM05D006166 ORTHO05D007663 2.7e-130 469.5 422 54.7
Gohir.D13G055000 Gossypium hirsutum HOM05D006166 ORTHO05D007663 2.3e-129 466.5 326 66.6
Os03g0192000 Oryza sativa ssp. japonica HOM05D006166 ORTHO05D007663 1.9e-128 463.4 409 55.5
Nitab4.5_0001937g0070 Nicotiana tabacum HOM05D006166 ORTHO05D007663 4.3e-128 462.2 348 61.2
CDE05G0221 Ceratophyllum demersum HOM05D006166 ORTHO05D007663 1.6e-127 460.3 364 60.7
GSVIVG01003077001 Vitis vinifera HOM05D006166 ORTHO05D007663 1.6e-127 460.3 319 66.1
CAN.G924.1 Capsicum annuum HOM05D006166 ORTHO05D007663 4.1e-126 455.7 330 61.5
Nitab4.5_0000215g0090 Nicotiana tabacum HOM05D006166 ORTHO05D007663 2.0e-125 453.4 348 60.3
SEGI_35388 Sequoiadendron giganteum HOM05D006166 ORTHO05D007663 5.3e-118 428.7 419 53.0
DCAR_009495 Daucus carota HOM05D000068 ORTHO05D000084 1.6e-114 417.2 319 62.7
FAN23G1673 Fragaria x ananassa HOM05D006166 ORTHO05D007663 1.8e-110 403.7 291 64.9
Os02g0752600 Oryza sativa ssp. japonica HOM05D006166 ORTHO05D007663 3.2e-107 392.9 363 54.0
HPP92_016815 Vanilla planifolia HOM05D006166 ORTHO05D007663 1.4e-105 387.5 348 54.0
AUR62010115 Chenopodium quinoa HOM05D006166 ORTHO05D007663 8.8e-105 384.8 312 58.7
Sc14g0003300 Simmondsia chinensis HOM05D006166 ORTHO05D007663 4.4e-104 382.5 278 67.3
Mapoly0026s0056 Marchantia polymorpha HOM05D006166 ORTHO05D007663 2.7e-98 363.2 358 52.0
SMO174G0124 Selaginella moellendorffii HOM05D006166 ORTHO05D007663 1.7e-95 354.0 298 55.0
AagrBONN_evm.TU.Sc2ySwM_117.2616 Anthoceros agrestis HOM05D006166 ORTHO05D007663 1.4e-94 350.9 346 52.3
Dinv24200 Davidia involucrata HOM05D006166 ORTHO05D007663 4.2e-91 339.3 408 45.6
Pp3c6_6030 Physcomitrium patens HOM05D006166 ORTHO05D007663 2.0e-85 320.5 370 47.6
Cc03_g14510 Coffea canephora HOM05D006166 ORTHO05D007663 7.7e-85 318.5 325 51.1
Cfa005618 Carpinus fangiana HOM05D006166 ORTHO05D007663 3.3e-83 313.2 298 54.4
Ah.01g009510 Amaranthus hybridus HOM05D006166 ORTHO05D007663 7.2e-83 312.0 245 60.4
MBI02_g36658_MAGBIO Magnolia biondii HOM05D006166 ORTHO05D007663 2.1e-82 310.5 300 51.0
Haze_10674 Corylus avellana HOM05D006166 ORTHO05D007663 5.0e-76 289.3 320 48.8
Solyc11g044800.3 Solanum lycopersicum HOM05D006166 ORTHO05D007663 8.0e-74 282.0 216 63.9
Zm00001eb007010 Zea mays HOM05D006166 ORTHO05D007663 3.7e-71 273.1 258 51.2
Pp3c6_6031 Physcomitrium patens HOM05D006166 ORTHO05D007663 5.4e-70 269.2 333 45.0
Dinv09040 Davidia involucrata HOM05D006166 ORTHO05D007663 5.0e-68 262.7 160 76.2
Glyma.17G217500 Glycine max HOM05D006166 ORTHO05D007663 1.2e-66 258.1 180 66.1
CDE05G0065 Ceratophyllum demersum HOM05D006166 ORTHO05D007663 4.1e-54 216.5 235 45.5
Ciclev10013528m.g Citrus clementina HOM05D006166 ORTHO05D007663 8.9e-49 198.7 157 59.2
Ciclev10033347m.g Citrus clementina HOM05D006166 ORTHO05D007663 1.3e-42 178.3 143 58.7
Pp3s70_110 Physcomitrium patens HOM05D006166 ORTHO05D007663 1.6e-37 161.4 275 34.2
Haze_10680 Corylus avellana HOM05D006166 ORTHO05D007663 6.0e-37 159.5 124 60.5
Haze_10658 Corylus avellana HOM05D006166 ORTHO05D007663 2.3e-36 157.5 118 61.0
Dinv09041 Davidia involucrata HOM05D006166 ORTHO05D000293 3.8e-31 140.2 122 63.9
Haze_10661 Corylus avellana HOM05D006166 ORTHO05D007663 2.3e-28 131.0 117 62.4
CDE05G1058 Ceratophyllum demersum HOM05D006166 ORTHO05D007663 2.4e-17 94.4 58 74.1
Haze_10677 Corylus avellana HOM05D006166 ORTHO05D007663 1.1e-09 68.9 43 72.1
SHI16502 Sapria himalayana HOM05D006166 ORTHO05D007663 1.8e-09 68.2 40 77.5


User provided reference genes

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