Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g02969 Brassica carinata HOM05D005442 ORTHO05D006450 6.8e-115 417.5 241 100.0
C03p57670 Brassica napus HOM05D005442 ORTHO05D006450 2.4e-104 382.5 244 85.2
BolC3t18042H Brassica oleracea HOM05D005442 ORTHO05D013811 4.2e-48 195.7 106 94.3
Sp3g30220 Schrenkiella parvula HOM05D005442 ORTHO05D006450 5.7e-45 185.3 105 89.5
A07p04140 Brassica napus HOM05D005442 ORTHO05D006450 2.8e-44 183.0 105 87.6
BraA07t28205Z Brassica rapa HOM05D005442 ORTHO05D006450 2.8e-44 183.0 105 87.6
BcaC06g36199 Brassica carinata HOM05D005442 ORTHO05D006450 8.2e-44 181.4 103 88.3
C07p06570 Brassica napus HOM05D005442 ORTHO05D006450 8.2e-44 181.4 103 88.3
BolC7t41079H Brassica oleracea HOM05D005442 ORTHO05D006450 8.2e-44 181.4 103 88.3
BcaB03g16428 Brassica carinata HOM05D005442 ORTHO05D006450 1.8e-43 180.3 105 86.7
C03p57690 Brassica napus HOM05D005442 ORTHO05D013811 4.5e-42 175.6 106 86.8
Thhalv10022629m.g Eutrema salsugineum HOM05D005442 ORTHO05D006450 6.5e-41 171.8 103 83.5
Carub.0001s3251 Capsella rubella HOM05D005442 ORTHO05D006450 1.1e-35 154.5 105 78.1
AL1G48920 Arabidopsis lyrata HOM05D005442 ORTHO05D006450 7.7e-34 148.3 105 73.3
CARHR033820 Cardamine hirsuta HOM05D005442 ORTHO05D006450 7.7e-34 148.3 105 75.2
AT1G34360 Arabidopsis thaliana HOM05D005442 ORTHO05D006450 2.2e-33 146.7 105 72.4
BolC3t18043H Brassica oleracea HOM05D008551 ORTHO05D006450 1.8e-30 137.1 74 93.2
Aa31LG8G14120 Aethionema arabicum HOM05D005442 ORTHO05D006450 2.3e-30 136.7 110 64.5
BcaC01g02968 Brassica carinata HOM05D005442 ORTHO05D006450 9.1e-27 124.8 105 66.7
THA.LOC104807379 Tarenaya hassleriana HOM05D005442 ORTHO05D006450 2.0e-26 123.6 102 59.8
vmacro17319 Vaccinium macrocarpon HOM05D005442 ORTHO05D006450 2.2e-20 103.6 108 53.7
Dinv41924 Davidia involucrata HOM05D005442 ORTHO05D006450 2.8e-20 103.2 159 42.8
Actinidia21468 Actinidia chinensis HOM05D005442 ORTHO05D006450 3.7e-20 102.8 108 52.8
Actinidia39159 Actinidia chinensis HOM05D005442 ORTHO05D006450 3.7e-20 102.8 108 52.8
Sed0001500 Sechium edule HOM05D005442 ORTHO05D006450 4.8e-20 102.4 103 54.4
Ca_03302_v3 Cicer arietinum L. HOM05D005442 ORTHO05D006450 6.3e-20 102.1 107 52.3
Cc09_g09800 Coffea canephora HOM05D005442 ORTHO05D006450 6.3e-20 102.1 104 51.0
CDE04G0468 Ceratophyllum demersum HOM05D005442 ORTHO05D000996 1.1e-19 101.3 101 51.5
Sc08g0002780 Simmondsia chinensis HOM05D005442 ORTHO05D006450 1.8e-19 100.5 133 42.9
EL10Ac9g21351 Beta vulgaris HOM05D005442 ORTHO05D006450 3.1e-19 99.8 109 51.4
CsaV3_2G016200 Cucumis sativus L. HOM05D005442 ORTHO05D006450 3.1e-19 99.8 101 51.5
MSTRG.16924 Avicennia marina HOM05D005442 ORTHO05D006450 4.1e-19 99.4 109 49.5
MELO3C020828.2 Cucumis melo HOM05D005442 ORTHO05D006450 5.3e-19 99.0 101 52.5
Atru.chr5.3384 Acer truncatum HOM05D005442 ORTHO05D006450 7.0e-19 98.6 110 50.0
TAR376G0424 Trochodendron aralioides HOM05D005442 ORTHO05D006450 9.1e-19 98.2 108 50.0
CDE02G3112 Ceratophyllum demersum HOM05D005442 ORTHO05D006450 1.2e-18 97.8 101 50.5
DCAR_011887 Daucus carota HOM05D005442 ORTHO05D006450 1.2e-18 97.8 110 50.0
Actinidia32035 Actinidia chinensis HOM05D005442 ORTHO05D006450 2.0e-18 97.1 108 50.9
Sabra09G0106500 Salix brachista HOM05D005442 ORTHO05D006450 2.0e-18 97.1 101 50.5
Lj5g0013939 Lotus japonicus HOM05D005442 ORTHO05D006450 2.6e-18 96.7 112 50.9
TAR369G0572 Trochodendron aralioides HOM05D005442 ORTHO05D006450 2.6e-18 96.7 108 50.0
Nn1g06499 Nelumbo nucifera HOM05D005442 ORTHO05D006450 3.5e-18 96.3 102 53.9
Psat6g232320 Pisum sativum HOM05D005442 ORTHO05D006450 3.5e-18 96.3 227 33.5
MBI11_g07617_MAGBIO Magnolia biondii HOM05D005442 ORTHO05D006450 4.5e-18 95.9 102 53.9
Thecc.02G056900 Theobroma cacao HOM05D005442 ORTHO05D006450 5.9e-18 95.5 104 50.0
C03p57650 Brassica napus HOM05D005442 ORTHO05D006450 1.3e-17 94.4 50 94.0
BolC3t18039H Brassica oleracea HOM05D005442 ORTHO05D006450 1.3e-17 94.4 50 94.0
Lalb_Chr06g0163701 Lupinus albus HOM05D005442 ORTHO05D006450 2.2e-17 93.6 102 53.9
Medtr1g112820 Medicago truncatula HOM05D005442 ORTHO05D002291 2.2e-17 93.6 106 50.0
Lj5A177G53 Lonicera japonica HOM05D005442 ORTHO05D006450 5.0e-17 92.4 112 45.5
CiPaw.05G084400 Carya illinoinensis HOM05D005442 ORTHO05D006450 8.5e-17 91.7 110 45.5
Eucgr.I01451 Eucalyptus grandis HOM05D005442 ORTHO05D006450 8.5e-17 91.7 107 43.9
Manes.01G140900 Manihot esculenta HOM05D005442 ORTHO05D006450 8.5e-17 91.7 108 46.3
Ah.01g023170 Amaranthus hybridus HOM05D005442 ORTHO05D006450 1.1e-16 91.3 102 48.0
Ciclev10028168m.g Citrus clementina HOM05D005442 ORTHO05D006450 1.1e-16 91.3 108 46.3
TPR.G2470 Trifolium pratense HOM05D005442 ORTHO05D006450 1.1e-16 91.3 101 52.5
MD05G1123900 Malus domestica HOM05D005442 ORTHO05D006450 1.5e-16 90.9 104 48.1
CSS0044298 Camellia sinensis var. sinensis HOM05D005442 ORTHO05D006450 1.9e-16 90.5 102 49.0
ClCG02G012030 Citrullus lanatus HOM05D005442 ORTHO05D006450 1.9e-16 90.5 101 49.5
Peaxi162Scf00362g00530 Petunia axillaris HOM05D005442 ORTHO05D006450 2.5e-16 90.1 118 44.9
AUR62013010 Chenopodium quinoa HOM05D005442 ORTHO05D006450 3.2e-16 89.7 107 48.6
Glyma.20G106900 Glycine max HOM05D005442 ORTHO05D006450 3.2e-16 89.7 107 51.4
GSVIVG01023996001 Vitis vinifera HOM05D005442 ORTHO05D006450 3.2e-16 89.7 108 46.3
TWI31G1375 Tripterygium wilfordii HOM05D005442 ORTHO05D006450 4.2e-16 89.4 107 44.9
Oeu015514.1 Olea europaea HOM05D005442 ORTHO05D006450 5.5e-16 89.0 89 48.3
Cpa.g.sc20.103 Carica papaya HOM05D005442 ORTHO05D006450 7.2e-16 88.6 92 52.2
COL.COLO4_17367 Corchorus olitorius HOM05D005442 ORTHO05D006450 1.2e-15 87.8 112 44.6
Haze_13370 Corylus avellana HOM05D005442 ORTHO05D006450 2.1e-15 87.0 110 44.5
AUR62010020 Chenopodium quinoa HOM05D005442 ORTHO05D006450 3.6e-15 86.3 102 48.0
SGA_v2.0_scaffold58G20356 Striga asiatica HOM05D002097 ORTHO05D002248 3.6e-15 86.3 108 44.4
Solyc01g111720.4 Solanum lycopersicum HOM05D005442 ORTHO05D006450 4.7e-15 85.9 109 43.1
Sopen01g053760 Solanum pennellii HOM05D005442 ORTHO05D006450 4.7e-15 85.9 109 43.1
Aqoxy6G02079 Aquilegia oxysepala HOM05D005442 ORTHO05D006450 6.1e-15 85.5 93 49.5
PGSC0003DMG400006166 Solanum tuberosum HOM05D005442 ORTHO05D006450 6.1e-15 85.5 109 42.2
PGR142G2067 Punica granatum HOM05D005442 ORTHO05D006450 1.0e-14 84.7 107 45.8
unitig_744.g24278 Utricularia gibba HOM05D005442 ORTHO05D006450 1.0e-14 84.7 115 41.7
arahy.Tifrunner.gnm1.ann1.U87P2U Arachis hypogaea HOM05D005442 ORTHO05D006450 1.4e-14 84.3 104 50.0
arahy.Tifrunner.gnm1.ann1.WUXL4S Arachis hypogaea HOM05D005442 ORTHO05D006450 1.4e-14 84.3 104 50.0
arahy.Tifrunner.gnm1.ann1.ZGQ44R Arachis hypogaea HOM05D005442 ORTHO05D006450 1.4e-14 84.3 104 50.0
Zm00001eb134390 Zea mays HOM05D005442 ORTHO05D006450 1.4e-14 84.3 101 49.5
ATR0763G134 Amborella trichopoda HOM05D005442 ORTHO05D006450 3.0e-14 83.2 107 45.8
CANSAT56G0103 Cannabis sativa HOM05D005442 ORTHO05D006450 4.0e-14 82.8 101 43.6
ECA233G3196 Erigeron canadensis HOM05D005442 ORTHO05D006450 4.0e-14 82.8 108 43.5
Hund06446 Selenicereus undatus HOM05D005442 ORTHO05D006450 4.0e-14 82.8 146 37.0
Os02g0101100 Oryza sativa ssp. japonica HOM05D005442 ORTHO05D006450 5.2e-14 82.4 93 49.5
Migut.B00066 Erythranthe guttata HOM05D005442 ORTHO05D006450 8.8e-14 81.6 103 43.7
Phvul.007G018400 Phaseolus vulgaris HOM05D005442 ORTHO05D006450 1.2e-13 81.3 101 48.5
FAN27G2972 Fragaria x ananassa HOM05D005442 ORTHO05D006450 1.5e-13 80.9 101 48.5
Lsat_1_v5_gn_6_13820 Lactuca sativa HOM05D005442 ORTHO05D006450 2.0e-13 80.5 108 40.7
PSO541G1416 Papaver somniferum HOM05D005442 ORTHO05D006450 2.0e-13 80.5 112 46.4
HPP92_022198 Vanilla planifolia HOM05D005442 ORTHO05D006450 2.0e-13 80.5 117 41.9
FvH4_2g15550 Fragaria vesca HOM05D005442 ORTHO05D006450 2.6e-13 80.1 144 38.9
FAN15G0807 Fragaria x ananassa HOM05D005442 ORTHO05D006450 2.6e-13 80.1 101 48.5
FAN24G2500 Fragaria x ananassa HOM05D005442 ORTHO05D006450 2.6e-13 80.1 144 38.9
HPP92_022180 Vanilla planifolia HOM05D005442 ORTHO05D006450 9.7e-13 78.2 117 41.0
Gohir.D02G227000 Gossypium hirsutum HOM05D005442 ORTHO05D006450 3.7e-12 76.3 104 43.3
CAN.G588.93 Capsicum annuum HOM05D005442 ORTHO05D006450 6.3e-12 75.5 108 44.4
Gohir.A03G205700 Gossypium hirsutum HOM05D005442 ORTHO05D006450 6.3e-12 75.5 110 43.6
Gorai.005G254900 Gossypium raimondii HOM05D005442 ORTHO05D006450 8.2e-12 75.1 103 42.7
PSO675G1865 Papaver somniferum HOM05D005442 ORTHO05D006450 1.1e-11 74.7 111 45.9
RcHm_v2.0_Chr6g0278721 Rosa chinensis HOM05D005442 ORTHO05D006450 1.1e-11 74.7 102 44.1
Prupe.8G167900 Prunus persica HOM05D005442 ORTHO05D006450 1.4e-11 74.3 88 48.9
SalBow1G0486 Salvia bowleyana HOM05D005442 ORTHO05D006450 1.8e-11 73.9 117 42.7
Duzib132G0277 Durio zibethinus HOM05D005442 ORTHO05D006450 2.4e-11 73.6 157 35.7
FAN20G2789 Fragaria x ananassa HOM05D005442 ORTHO05D006450 2.0e-10 70.5 110 42.7
Mapoly0037s0141 Marchantia polymorpha HOM05D005442 ORTHO05D006450 5.9e-10 68.9 96 37.5
QL11p051413 Quercus lobata HOM05D005442 ORTHO05D006450 6.5e-09 65.5 160 34.4
Glyma.10G282700 Glycine max HOM05D005442 ORTHO05D006450 1.1e-08 64.7 101 41.6
Rhsim05G0053300 Rhododendron simsii HOM05D005442 ORTHO05D006450 2.5e-08 63.5 57 54.4
Rhsim09G0155200 Rhododendron simsii HOM05D005442 ORTHO05D006450 3.2e-08 63.2 65 49.2
CBR_g7972 Chara braunii HOM05D004690 ORTHO05D005527 4.2e-08 62.8 101 46.5
Pp3c14_5800 Physcomitrium patens HOM05D004690 ORTHO05D005527 7.2e-08 62.0 99 38.4
C03p57680 Brassica napus HOM05D005442 ORTHO05D006450 2.7e-07 60.1 44 77.3
Pp3c16_14950 Physcomitrium patens HOM05D005442 ORTHO05D006450 2.7e-07 60.1 92 37.0
AagrBONN_evm.TU.Sc2ySwM_344.3952 Anthoceros agrestis HOM05D005442 ORTHO05D006450 4.7e-07 59.3 95 37.9
HanXRQChr08g0227271 Helianthus annuus HOM05D005442 ORTHO05D006450 6.1e-07 58.9 91 41.8
SMO171G0119 Selaginella moellendorffii HOM05D005442 ORTHO05D006450 8.0e-07 58.5 94 38.3
Mapoly0090s0068 Marchantia polymorpha HOM05D004690 ORTHO05D005527 5.2e-06 55.8 99 37.4
Pp3c27_2790 Physcomitrium patens HOM05D005442 ORTHO05D006450 8.8e-06 55.1 92 34.8
SEGI_12526 Sequoiadendron giganteum HOM05D005442 ORTHO05D006450 8.8e-06 55.1 42 61.9
THA.LOC104803547 Tarenaya hassleriana HOM05D004690 ORTHO05D005527 8.8e-06 55.1 95 36.8


User provided reference genes

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