Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g02724 Brassica carinata HOM05D004947 ORTHO05D006077 1.2e-303 1045.8 562 100.0
C03p61260 Brassica napus HOM05D004947 ORTHO05D006077 1.2e-303 1045.8 562 100.0
BolC3t18387H Brassica oleracea HOM05D004947 ORTHO05D006077 1.7e-302 1042.0 562 99.6
A06p31700 Brassica napus HOM05D004947 ORTHO05D006077 2.0e-290 1001.9 562 96.3
BraA06t26105Z Brassica rapa HOM05D004947 ORTHO05D006077 4.8e-289 997.3 563 96.3
BcaB02g09842 Brassica carinata HOM05D004947 ORTHO05D006077 1.0e-254 883.2 562 88.8
Sp2g28010 Schrenkiella parvula HOM05D004947 ORTHO05D006077 1.2e-234 816.6 567 78.0
Thhalv10003912m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 7.9e-199 697.6 575 69.7
CARHR293840 Cardamine hirsuta HOM05D004947 ORTHO05D006077 2.2e-193 679.5 555 71.0
BcaB04g20000 Brassica carinata HOM05D004947 ORTHO05D006077 2.6e-186 656.0 575 66.3
AL8G42430 Arabidopsis lyrata HOM05D004947 ORTHO05D006077 5.9e-186 654.8 555 67.6
AT5G64930 Arabidopsis thaliana HOM05D004947 ORTHO05D006077 1.1e-184 650.6 571 62.5
Aa31LG1G17040 Aethionema arabicum HOM05D004947 ORTHO05D006077 3.3e-173 612.5 537 64.1
Carub.0008s2576 Capsella rubella HOM05D004947 ORTHO05D006077 2.9e-169 599.4 552 64.3
THA.LOC104818481 Tarenaya hassleriana HOM05D004947 ORTHO05D006077 1.3e-137 494.2 484 57.6
Thhalv10019768m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 5.6e-136 488.8 541 56.4
Duzib147G0355 Durio zibethinus HOM05D004947 ORTHO05D006077 1.1e-104 384.8 559 41.3
Manes.12G141400 Manihot esculenta HOM05D004947 ORTHO05D006077 1.5e-104 384.4 522 43.7
Atru.chr4.372 Acer truncatum HOM05D004947 ORTHO05D006077 2.8e-103 380.2 489 44.0
Atru.chr4.373 Acer truncatum HOM05D004947 ORTHO05D006077 2.8e-103 380.2 489 44.0
Gohir.D03G045400 Gossypium hirsutum HOM05D004947 ORTHO05D006077 8.1e-103 378.6 486 43.4
Thecc.01G111600 Theobroma cacao HOM05D004947 ORTHO05D006077 8.1e-103 378.6 569 41.7
Gohir.A02G134000 Gossypium hirsutum HOM05D004947 ORTHO05D006077 3.1e-102 376.7 486 43.6
Ciclev10025244m.g Citrus clementina HOM05D004947 ORTHO05D006077 4.5e-101 372.9 489 45.0
Gorai.003G046500 Gossypium raimondii HOM05D004947 ORTHO05D006077 4.5e-101 372.9 487 43.3
TAR625G0980 Trochodendron aralioides HOM05D004947 ORTHO05D006077 1.3e-100 371.3 500 42.8
TAR376G0315 Trochodendron aralioides HOM05D004947 ORTHO05D006077 1.7e-100 370.9 492 45.5
Dinv42703 Davidia involucrata HOM05D004947 ORTHO05D006077 2.9e-100 370.2 483 44.7
Cfa002745 Carpinus fangiana HOM05D004947 ORTHO05D006077 3.2e-99 366.7 486 43.4
COL.COLO4_11020 Corchorus olitorius HOM05D004947 ORTHO05D006077 9.3e-99 365.2 564 39.9
TPR.G6951 Trifolium pratense HOM05D004947 ORTHO05D006077 2.1e-98 364.0 500 41.2
Nitab4.5_0002843g0020 Nicotiana tabacum HOM05D004947 ORTHO05D006077 4.6e-98 362.8 516 42.8
Nitab4.5_0000156g0160 Nicotiana tabacum HOM05D004947 ORTHO05D006077 5.6e-96 355.9 518 43.1
CAN.G1854.1 Capsicum annuum HOM05D004947 ORTHO05D006077 7.4e-96 355.5 506 43.5
Peaxi162Scf01006g00315 Petunia axillaris HOM05D004947 ORTHO05D006077 7.4e-96 355.5 478 43.3
HanXRQChr14g0446211 Helianthus annuus HOM05D004947 ORTHO05D006077 9.6e-96 355.1 502 42.4
PSO675G5310 Papaver somniferum HOM05D004947 ORTHO05D006077 9.6e-96 355.1 467 44.1
PGSC0003DMG402012957 Solanum tuberosum HOM05D004947 ORTHO05D006077 9.6e-96 355.1 501 43.9
Lalb_Chr11g0068011 Lupinus albus HOM05D004947 ORTHO05D006077 1.3e-95 354.8 500 42.2
Prupe.6G175000 Prunus persica HOM05D004947 ORTHO05D006077 1.3e-95 354.8 501 43.9
Sopen04g023630 Solanum pennellii HOM05D004947 ORTHO05D006077 1.6e-95 354.4 501 43.7
MBI03_g11138_MAGBIO Magnolia biondii HOM05D004947 ORTHO05D006077 2.1e-95 354.0 455 43.7
TWI74G1183 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 6.2e-95 352.4 490 44.5
QL06p032353 Quercus lobata HOM05D004947 ORTHO05D006077 8.1e-95 352.1 481 42.6
HanXRQChr15g0471901 Helianthus annuus HOM05D004947 ORTHO05D006077 1.1e-94 351.7 455 45.3
Solyc04g054170.4 Solanum lycopersicum HOM05D004947 ORTHO05D006077 3.1e-94 350.1 531 41.6
Ca_16888_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 1.2e-93 348.2 480 42.3
Potri.005G083600 Populus trichocarpa HOM05D004947 ORTHO05D006077 1.2e-93 348.2 563 42.5
Medtr3g094760 Medicago truncatula HOM05D004947 ORTHO05D006077 1.5e-93 347.8 481 40.7
Thhalv10005311m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 3.4e-93 346.7 512 44.7
Lsat_1_v5_gn_2_65461 Lactuca sativa HOM05D004947 ORTHO05D006077 3.4e-93 346.7 477 41.7
PGR102G0173 Punica granatum HOM05D004947 ORTHO05D006077 5.8e-93 345.9 497 41.0
arahy.Tifrunner.gnm1.ann1.V2ZAQJ Arachis hypogaea HOM05D004947 ORTHO05D006077 7.6e-93 345.5 495 41.0
PSO541G1244 Papaver somniferum HOM05D004947 ORTHO05D006077 1.0e-92 345.1 468 43.2
arahy.Tifrunner.gnm1.ann1.XRAY4T Arachis hypogaea HOM05D004947 ORTHO05D006077 2.2e-92 344.0 497 41.4
CANSAT01G0537 Cannabis sativa HOM05D004947 ORTHO05D006077 6.5e-92 342.4 626 37.7
Lj1g0026570 Lotus japonicus HOM05D004947 ORTHO05D006077 1.1e-91 341.7 483 41.2
Manes.13G077600 Manihot esculenta HOM05D004947 ORTHO05D006077 2.5e-91 340.5 412 45.4
Sc03g0004250 Simmondsia chinensis HOM05D004947 ORTHO05D006077 4.2e-91 339.7 493 42.8
SGA_v2.0_scaffold47G17714 Striga asiatica HOM05D004947 ORTHO05D006077 5.5e-91 339.3 485 40.8
vmacro12909 Vaccinium macrocarpon HOM05D004947 ORTHO05D006077 2.1e-90 337.4 523 41.1
CsaV3_6G045960 Cucumis sativus L. HOM05D004947 ORTHO05D006077 4.6e-90 336.3 485 38.8
Migut.L00078 Erythranthe guttata HOM05D004947 ORTHO05D006077 4.6e-90 336.3 481 42.4
ClCG01G019270 Citrullus lanatus HOM05D004947 ORTHO05D006077 1.1e-88 331.6 527 38.0
Cc07_g16050 Coffea canephora HOM05D004947 ORTHO05D006077 3.3e-88 330.1 503 39.6
DCAR_014256 Daucus carota HOM05D004947 ORTHO05D006077 4.3e-88 329.7 504 40.9
RcHm_v2.0_Chr2g0116221 Rosa chinensis HOM05D004947 ORTHO05D006077 1.6e-87 327.8 512 39.3
Oeu056486.1 Olea europaea HOM05D004947 ORTHO05D006077 2.8e-87 327.0 477 41.7
TWI53G2111 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 3.7e-87 326.6 492 41.3
Actinidia16961 Actinidia chinensis HOM05D004947 ORTHO05D006077 4.8e-87 326.2 493 42.6
Sed0009808 Sechium edule HOM05D004947 ORTHO05D006077 3.1e-86 323.6 423 43.3
Hund19664 Selenicereus undatus HOM05D004947 ORTHO05D006077 4.1e-86 323.2 521 40.5
CiPaw.03G134900 Carya illinoinensis HOM05D004947 ORTHO05D006077 5.3e-86 322.8 430 42.3
MD01G1017700 Malus domestica HOM05D004947 ORTHO05D006077 6.9e-86 322.4 524 39.3
Sabra07G0068900 Salix brachista HOM05D004947 ORTHO05D006077 6.9e-86 322.4 544 39.7
TPR.G2194 Trifolium pratense HOM05D004947 ORTHO05D006077 3.4e-85 320.1 478 38.5
CDE05G2725 Ceratophyllum demersum HOM05D004947 ORTHO05D006077 4.5e-85 319.7 468 40.8
Ca_17699_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 2.9e-84 317.0 456 38.4
Os02g0770100 Oryza sativa ssp. japonica HOM05D004947 ORTHO05D006077 3.8e-84 316.6 481 39.7
EL10Ac6g14744 Beta vulgaris HOM05D004947 ORTHO05D006077 1.1e-83 315.1 508 39.0
Eucgr.H04830 Eucalyptus grandis HOM05D004947 ORTHO05D006077 2.5e-83 313.9 413 40.7
SalBow5G4162 Salvia bowleyana HOM05D004947 ORTHO05D006077 9.3e-83 312.0 546 38.3
SHI11672 Sapria himalayana HOM05D004947 ORTHO05D006077 9.3e-83 312.0 451 42.8
CiPaw.04G092600 Carya illinoinensis HOM05D004947 ORTHO05D006077 1.2e-82 311.6 411 42.3
AUR62003314 Chenopodium quinoa HOM05D004947 ORTHO05D006077 2.1e-82 310.8 502 38.4
Rhsim10G0151500 Rhododendron simsii HOM05D004947 ORTHO05D006077 2.1e-82 310.8 622 37.1
Aqoxy5G01985_Aqoxy5G01986 Aquilegia oxysepala HOM05D004947 ORTHO05D006077 2.7e-82 310.5 492 38.2
ECA238G1011 Erigeron canadensis HOM05D004947 ORTHO05D006077 6.1e-82 309.3 461 39.3
HPP92_005876 Vanilla planifolia HOM05D004947 ORTHO05D006077 7.9e-82 308.9 467 39.2
Nn1g00054 Nelumbo nucifera HOM05D004947 ORTHO05D006077 1.3e-81 308.1 419 40.3
Ah.02g124420 Amaranthus hybridus HOM05D004947 ORTHO05D006077 2.3e-81 307.4 501 38.5
Zm00001eb364640 Zea mays HOM05D004947 ORTHO05D006077 1.1e-80 305.1 445 38.9
Lj4A878G34 Lonicera japonica HOM05D004947 ORTHO05D006077 3.1e-78 297.0 395 42.5
FAN28G2993 Fragaria x ananassa HOM05D004947 ORTHO05D006077 2.0e-77 294.3 494 36.6
Psat5g067160 Pisum sativum HOM05D004947 ORTHO05D006077 5.9e-77 292.7 449 37.0
FAN23G3004 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.0e-76 292.0 544 36.0
unitig_88.g27735 Utricularia gibba HOM05D004947 ORTHO05D006077 1.3e-76 291.6 596 34.9
Haze_25032 Corylus avellana HOM05D004947 ORTHO05D006077 1.7e-76 291.2 486 39.3
FAN26G0674 Fragaria x ananassa HOM05D004947 ORTHO05D006077 8.5e-76 288.9 484 36.6
Glyma.06G145800 Glycine max HOM05D004947 ORTHO05D006077 1.9e-75 287.7 532 34.6
FvH4_1g24620 Fragaria vesca HOM05D004947 ORTHO05D006077 9.4e-75 285.4 553 34.9
Phvul.009G140300 Phaseolus vulgaris HOM05D004947 ORTHO05D006077 4.6e-74 283.1 519 33.9
ATR0171G039 Amborella trichopoda HOM05D004947 ORTHO05D006077 3.0e-73 280.4 458 37.6
FAN19G2885 Fragaria x ananassa HOM05D004947 ORTHO05D006077 2.4e-70 270.8 555 34.6
MELO3C007803.2 Cucumis melo HOM05D004947 ORTHO05D006077 3.1e-70 270.4 485 35.7
Psat7g052040 Pisum sativum HOM05D004947 ORTHO05D006077 4.7e-66 256.5 366 38.3
MELO3C007802.2 Cucumis melo HOM05D004947 ORTHO05D006077 1.1e-64 251.9 465 33.3
GSVIVG01022215001 Vitis vinifera HOM05D004947 ORTHO05D006077 1.3e-63 248.4 384 40.1
AUR62016269 Chenopodium quinoa HOM05D004947 ORTHO05D006077 8.5e-60 235.7 489 35.6
BcaC08g44843 Brassica carinata HOM05D004947 ORTHO05D006077 2.6e-56 224.2 484 35.1
C06p24500 Brassica napus HOM05D004947 ORTHO05D006077 2.6e-56 224.2 484 35.1
BolC6t37597H Brassica oleracea HOM05D004947 ORTHO05D006077 2.6e-56 224.2 484 35.1
BcaB02g07604 Brassica carinata HOM05D004947 ORTHO05D006077 1.7e-55 221.5 489 35.6
A07p23420 Brassica napus HOM05D004947 ORTHO05D006077 1.7e-55 221.5 484 34.9
BraA07t30005Z Brassica rapa HOM05D004947 ORTHO05D006077 1.7e-55 221.5 484 34.9
SalBow5G3891 Salvia bowleyana HOM05D004947 ORTHO05D006077 1.2e-53 215.3 236 45.3
Sabra05G0068700 Salix brachista HOM05D004947 ORTHO05D006077 8.0e-50 202.6 327 42.8
QL93p0275_0011 Quercus lobata HOM05D004947 ORTHO05D006077 4.5e-45 186.8 295 41.4
CSS0010100 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 8.5e-44 182.6 339 41.3
Potri.007G082100 Populus trichocarpa HOM05D004947 ORTHO05D006077 2.5e-43 181.0 396 40.7
Cpa.g.sc196.3 Carica papaya HOM05D004947 ORTHO05D006077 4.0e-41 173.7 179 46.9
FAN23G2837 Fragaria x ananassa HOM05D004947 ORTHO05D006077 4.0e-41 173.7 348 33.9
Nn1g05196 Nelumbo nucifera HOM05D004947 ORTHO05D006077 6.8e-41 172.9 167 46.7
Zm00001eb193490 Zea mays HOM05D004947 ORTHO05D006077 4.9e-39 166.8 305 39.0
SEGI_09258 Sequoiadendron giganteum HOM05D004947 ORTHO05D006077 2.7e-37 161.0 267 36.0
CSS0029975 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 1.3e-36 158.7 294 40.1
Mapoly0483s0001 Marchantia polymorpha HOM05D004947 ORTHO05D006077 1.4e-33 148.7 302 29.8
VMungo1309G0633 Vigna mungo HOM05D004947 ORTHO05D006077 2.6e-32 144.4 133 47.4
Mapoly0107s0002 Marchantia polymorpha HOM05D004947 ORTHO05D006077 3.4e-32 144.1 302 29.5
FvH4_1g22140 Fragaria vesca HOM05D004947 ORTHO05D006077 2.9e-31 141.0 329 32.8
Pp3c22_5670 Physcomitrium patens HOM05D004947 ORTHO05D006077 7.8e-29 132.9 210 33.3
AagrBONN_evm.TU.Sc2ySwM_228.3588 Anthoceros agrestis HOM05D004947 ORTHO05D006077 5.0e-28 130.2 367 28.6
Pp3c21_530 Physcomitrium patens HOM05D004947 ORTHO05D006077 5.6e-27 126.7 228 29.8
Mapoly0002s0001 Marchantia polymorpha HOM05D004947 ORTHO05D006077 4.0e-25 120.6 295 28.1
VMungo1309G1623 Vigna mungo HOM05D004947 ORTHO05D006077 4.0e-25 120.6 366 29.0
CSS0006585 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 1.4e-17 95.5 89 44.9
CSS0047108 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 1.4e-17 95.5 89 44.9
FAN28G0567 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.4e-17 95.5 214 30.8
SGA_v2.0_scaffold47G17717 Striga asiatica HOM05D004947 ORTHO05D006077 1.8e-17 95.1 132 35.6
CBR_g4593 Chara braunii HOM05D004947 ORTHO05D006077 9.8e-16 89.4 333 23.4
CBR_g49522 Chara braunii HOM05D000019 ORTHO05D000048 4.6e-13 80.5 300 22.3
Nn1g00055 Nelumbo nucifera HOM05D004947 ORTHO05D006077 4.6e-13 80.5 76 51.3
Nn5g28924 Nelumbo nucifera HOM05D004947 ORTHO05D006077 2.6e-08 64.7 166 33.7


User provided reference genes

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