Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g02422 Brassica carinata HOM05D004718 ORTHO05D005838 0.0e+00 1382.1 679 100.0
A06p28290 Brassica napus HOM05D004718 ORTHO05D005838 0.0e+00 1081.6 820 71.7
BraA06t25772Z Brassica rapa HOM05D004718 ORTHO05D005838 0.0e+00 1078.9 820 71.7
BcaB02g09597 Brassica carinata HOM05D004718 ORTHO05D005838 3.0e-293 1011.5 814 68.9
BcaB01g00691 Brassica carinata HOM05D004718 ORTHO05D005838 4.2e-287 991.1 828 66.8
Sp5g12510 Schrenkiella parvula HOM05D004718 ORTHO05D005838 2.1e-286 988.8 829 66.6
A06p18130 Brassica napus HOM05D004718 ORTHO05D005838 1.0e-285 986.5 828 66.9
BraA06t24901Z Brassica rapa HOM05D004718 ORTHO05D005838 1.0e-285 986.5 828 66.9
C08p24600 Brassica napus HOM05D004718 ORTHO05D005838 3.3e-284 981.5 828 66.4
BolC8t50076H Brassica oleracea HOM05D004718 ORTHO05D005838 3.3e-284 981.5 828 66.4
BcaC07g39424 Brassica carinata HOM05D004718 ORTHO05D005838 2.8e-283 978.4 828 66.3
C03p65460 Brassica napus HOM05D004718 ORTHO05D005838 3.1e-282 974.9 484 98.6
Thhalv10010085m.g Eutrema salsugineum HOM05D004718 ORTHO05D005838 1.5e-281 972.6 832 65.4
AL5G29440 Arabidopsis lyrata HOM05D004718 ORTHO05D005838 1.3e-272 943.0 806 64.8
AT3G49600 Arabidopsis thaliana HOM05D004718 ORTHO05D005838 6.1e-270 934.1 827 62.6
CARHR158620 Cardamine hirsuta HOM05D004718 ORTHO05D005838 2.3e-269 932.2 832 63.1
Carub.0005s1593 Capsella rubella HOM05D004718 ORTHO05D005838 8.5e-264 913.7 832 62.4
Aa31LG4G18090 Aethionema arabicum HOM05D004718 ORTHO05D005838 1.8e-245 852.8 783 61.8
THA.LOC104799000 Tarenaya hassleriana HOM05D004718 ORTHO05D005838 8.5e-240 833.9 831 56.3
AL8G22480 Arabidopsis lyrata HOM05D004718 ORTHO05D005838 1.2e-206 723.8 542 68.6
Manes.18G079200 Manihot esculenta HOM05D004718 ORTHO05D005838 2.9e-187 659.4 843 47.2
MD15G1110500 Malus domestica HOM05D004718 ORTHO05D005838 7.8e-185 651.4 838 46.7
QL12p024639 Quercus lobata HOM05D004718 ORTHO05D005838 1.0e-184 651.0 680 51.2
PGR142G1098 Punica granatum HOM05D004718 ORTHO05D005838 4.8e-182 642.1 679 51.8
Prupe.1G462800 Prunus persica HOM05D004718 ORTHO05D005838 8.1e-182 641.3 839 46.8
CiPaw.07G215000 Carya illinoinensis HOM05D004718 ORTHO05D005838 1.4e-181 640.6 678 52.5
RcHm_v2.0_Chr6g0312261 Rosa chinensis HOM05D004718 ORTHO05D005838 1.5e-180 637.1 837 45.5
MD08G1133600 Malus domestica HOM05D004718 ORTHO05D005838 9.9e-180 634.4 839 45.8
Haze_21689 Corylus avellana HOM05D004718 ORTHO05D005838 1.7e-179 633.6 697 51.1
arahy.Tifrunner.gnm1.ann1.N8XBBJ Arachis hypogaea HOM05D004718 ORTHO05D005838 2.9e-179 632.9 833 46.3
Thecc.09G001900 Theobroma cacao HOM05D004718 ORTHO05D005838 2.9e-179 632.9 683 51.1
Gohir.A13G181900 Gossypium hirsutum HOM05D004718 ORTHO05D005838 1.1e-178 630.9 837 46.2
Duzib168G2024 Durio zibethinus HOM05D004718 ORTHO05D005838 3.2e-178 629.4 843 44.8
GSVIVG01035602001 Vitis vinifera HOM05D004718 ORTHO05D005838 7.1e-178 628.2 651 51.9
Atru.chr12.843 Acer truncatum HOM05D004718 ORTHO05D005838 4.6e-177 625.5 680 51.2
Gohir.D13G185401 Gossypium hirsutum HOM05D004718 ORTHO05D005838 2.3e-176 623.2 678 50.7
TAR624G0199 Trochodendron aralioides HOM05D004718 ORTHO05D005838 3.9e-176 622.5 837 45.9
FAN20G1074 Fragaria x ananassa HOM05D003231 ORTHO05D005838 1.1e-175 620.9 673 50.8
Gorai.013G211400 Gossypium raimondii HOM05D004718 ORTHO05D005838 1.1e-175 620.9 678 50.7
CANSAT25G2838 Cannabis sativa HOM05D004718 ORTHO05D005838 2.5e-175 619.8 684 49.6
FvH4_2g30650 Fragaria vesca HOM05D004718 ORTHO05D005838 7.4e-175 618.2 673 50.8
Lalb_Chr14g0362131 Lupinus albus HOM05D004718 ORTHO05D005838 7.4e-175 618.2 840 44.6
Glyma.14G132500 Glycine max HOM05D004718 ORTHO05D005838 2.1e-174 616.7 775 47.0
COL.COLO4_18636 Corchorus olitorius HOM05D004718 ORTHO05D005838 2.8e-174 616.3 829 45.6
Ciclev10007306m.g Citrus clementina HOM05D004718 ORTHO05D005838 1.1e-173 614.4 847 45.0
MELO3C011203.2 Cucumis melo HOM05D004718 ORTHO05D005838 3.1e-173 612.8 676 49.4
Dinv09445 Davidia involucrata HOM05D004718 ORTHO05D005838 6.9e-173 611.7 680 50.4
CsaV3_2G031540 Cucumis sativus L. HOM05D004718 ORTHO05D005838 1.5e-172 610.5 840 44.5
Glyma.17G201000 Glycine max HOM05D004718 ORTHO05D005838 4.5e-172 609.0 771 46.4
TWI32G0049 Tripterygium wilfordii HOM05D004718 ORTHO05D005838 5.8e-172 608.6 684 48.5
Phvul.001G057700 Phaseolus vulgaris HOM05D004718 ORTHO05D005838 1.7e-171 607.1 843 44.0
Ca_12884_v3 Cicer arietinum L. HOM05D004718 ORTHO05D005838 1.1e-170 604.4 783 45.2
Medtr1g010040 Medicago truncatula HOM05D004718 ORTHO05D005838 1.4e-170 604.0 774 46.0
CSS0012298 Camellia sinensis var. sinensis HOM05D004718 ORTHO05D005838 5.5e-170 602.1 839 45.1
CSS0022336 Camellia sinensis var. sinensis HOM05D004718 ORTHO05D005838 5.5e-170 602.1 839 45.1
Lalb_Chr08g0243651 Lupinus albus HOM05D004718 ORTHO05D005838 1.2e-169 600.9 836 44.0
Lj5g0017014 Lotus japonicus HOM05D004718 ORTHO05D005838 2.1e-169 600.1 836 43.7
Nitab4.5_0000964g0050 Nicotiana tabacum HOM05D004718 ORTHO05D005838 2.1e-169 600.1 851 43.9
arahy.Tifrunner.gnm1.ann1.7TNR6F Arachis hypogaea HOM05D004718 ORTHO05D005838 2.7e-169 599.7 840 45.1
Sc06g0001390 Simmondsia chinensis HOM05D004718 ORTHO05D005838 2.7e-169 599.7 682 48.8
ClCG08G012790 Citrullus lanatus HOM05D004718 ORTHO05D005838 3.5e-169 599.4 682 49.4
Psat6g031760 Pisum sativum HOM05D004718 ORTHO05D005838 2.3e-168 596.7 844 43.2
VMungo0647G1764 Vigna mungo HOM05D004718 ORTHO05D005838 2.3e-168 596.7 835 43.2
AUR62028027 Chenopodium quinoa HOM05D004718 ORTHO05D005838 3.0e-168 596.3 832 44.5
ECA240G2491 Erigeron canadensis HOM05D004718 ORTHO05D005838 3.9e-168 595.9 834 42.6
HanXRQChr03g0082331 Helianthus annuus HOM05D004718 ORTHO05D005838 3.9e-168 595.9 671 47.8
VMungo1309G0968 Vigna mungo HOM05D004718 ORTHO05D005838 3.9e-168 595.9 773 46.1
EL10Ac2g03649 Beta vulgaris HOM05D004718 ORTHO05D005838 5.1e-168 595.5 851 43.9
Glyma.06G075500 Glycine max HOM05D004718 ORTHO05D005838 5.1e-168 595.5 785 44.8
Medtr3g108660 Medicago truncatula HOM05D004718 ORTHO05D005838 4.3e-167 592.4 846 44.0
AUR62020697 Chenopodium quinoa HOM05D004718 ORTHO05D005838 1.3e-166 590.9 832 44.4
TPR.G12432 Trifolium pratense HOM05D004718 ORTHO05D005838 1.3e-166 590.9 769 45.3
Glyma.04G074300 Glycine max HOM05D004718 ORTHO05D005838 2.1e-166 590.1 779 45.2
Potri.005G179500 Populus trichocarpa HOM05D004718 ORTHO05D005838 2.8e-166 589.7 836 43.9
Nn8g40158 Nelumbo nucifera HOM05D004718 ORTHO05D005838 6.2e-166 588.6 670 49.4
Sed0007031 Sechium edule HOM05D004718 ORTHO05D005838 3.1e-165 586.3 674 48.5
Nitab4.5_0000004g0240 Nicotiana tabacum HOM05D004718 ORTHO05D005838 6.9e-165 585.1 846 43.0
Ca_15681_v3 Cicer arietinum L. HOM05D004718 ORTHO05D005838 9.0e-165 584.7 836 42.6
Psat5g025880 Pisum sativum HOM05D004718 ORTHO05D005838 9.0e-165 584.7 680 47.5
Actinidia25724 Actinidia chinensis HOM05D004718 ORTHO05D005838 1.2e-164 584.3 681 48.2
CAN.G30.25 Capsicum annuum HOM05D004718 ORTHO05D005838 3.4e-164 582.8 844 42.9
Hma1.2p1_0147F.1_g065850 Hydrangea macrophylla HOM05D004718 ORTHO05D005838 3.4e-164 582.8 786 44.3
Actinidia03322 Actinidia chinensis HOM05D004718 ORTHO05D005838 7.6e-164 581.6 845 43.9
Aqoxy7G00911 Aquilegia oxysepala HOM05D004718 ORTHO05D005838 1.7e-163 580.5 840 42.4
Lj7A755G38 Lonicera japonica HOM05D004718 ORTHO05D005838 2.2e-163 580.1 682 48.1
Cc07_g17410 Coffea canephora HOM05D004718 ORTHO05D005838 2.9e-163 579.7 678 47.6
Rhsim04G0220700 Rhododendron simsii HOM05D004718 ORTHO05D005838 2.9e-163 579.7 840 44.0
DCAR_000697 Daucus carota HOM05D004718 ORTHO05D005838 1.4e-162 577.4 783 43.3
Phvul.009G100000 Phaseolus vulgaris HOM05D004718 ORTHO05D005838 1.9e-162 577.0 680 47.8
Sed0011780 Sechium edule HOM05D004718 ORTHO05D005838 2.5e-162 576.6 677 47.6
MBI07_g41265_MAGBIO Magnolia biondii HOM05D004718 ORTHO05D005838 3.5e-161 572.8 677 47.3
MSTRG.2684 Avicennia marina HOM05D004718 ORTHO05D005838 6.1e-161 572.0 845 42.0
Sabra02G0063900 Salix brachista HOM05D004718 ORTHO05D005838 7.9e-161 571.6 673 48.0
Peaxi162Scf00583g00537 Petunia axillaris HOM05D004718 ORTHO05D005838 2.3e-160 570.1 847 42.4
Sopen03g021200 Solanum pennellii HOM05D004718 ORTHO05D005838 2.3e-160 570.1 785 44.2
Ah.11g044230 Amaranthus hybridus HOM05D004718 ORTHO05D005838 6.7e-160 568.5 664 47.9
Solyc03g078390.3 Solanum lycopersicum HOM05D004718 ORTHO05D005838 8.7e-160 568.2 786 44.0
Potri.002G081600 Populus trichocarpa HOM05D004718 ORTHO05D005838 3.3e-159 566.2 672 47.8
Oeu047653.1 Olea europaea HOM05D004718 ORTHO05D005838 2.8e-158 563.1 842 42.9
Migut.H01115 Erythranthe guttata HOM05D004718 ORTHO05D005838 6.9e-157 558.5 844 42.7
Hund19371 Selenicereus undatus HOM05D004718 ORTHO05D005838 1.2e-156 557.8 949 39.0
Lsat_1_v5_gn_5_59280 Lactuca sativa HOM05D004718 ORTHO05D005838 4.2e-154 549.3 669 45.3
ATR0006G074 Amborella trichopoda HOM05D004718 ORTHO05D005838 9.4e-154 548.1 659 45.7
PSO421G0298 Papaver somniferum HOM05D004718 ORTHO05D005838 4.6e-153 545.8 677 46.5
SGA_v2.0_scaffold76G25169 Striga asiatica HOM05D004718 ORTHO05D005838 1.8e-152 543.9 851 40.7
Zm00001eb310400 Zea mays HOM05D004718 ORTHO05D005838 2.3e-152 543.5 833 40.6
PSO063G2513 Papaver somniferum HOM05D004718 ORTHO05D005838 1.2e-148 531.2 656 46.2
Zm00001eb008340 Zea mays HOM05D004718 ORTHO05D005838 2.2e-147 526.9 828 40.1
CDE04G3074 Ceratophyllum demersum HOM05D004718 ORTHO05D005838 7.2e-146 521.9 668 44.9
PSO017G4020 Papaver somniferum HOM05D004718 ORTHO05D005838 7.2e-146 521.9 656 44.8
SEGI_37293 Sequoiadendron giganteum HOM05D004718 ORTHO05D005838 3.6e-145 519.6 679 43.2
FAN27G1892 Fragaria x ananassa HOM05D004718 ORTHO05D005838 1.1e-143 514.6 610 49.0
CDE06G1884 Ceratophyllum demersum HOM05D004718 ORTHO05D005838 1.2e-140 504.6 673 43.4
vmacro12747 Vaccinium macrocarpon HOM05D004718 ORTHO05D005838 1.9e-138 497.3 815 38.9
Pp3c16_5610 Physcomitrium patens HOM05D004718 ORTHO05D005838 4.1e-125 453.0 687 38.9
Mapoly0015s0043 Marchantia polymorpha HOM05D004718 ORTHO05D005838 1.7e-123 447.6 701 38.9
unitig_699.g19717 Utricularia gibba HOM05D004718 ORTHO05D005838 1.7e-123 447.6 593 43.3
Eucgr.E04341 Eucalyptus grandis HOM05D004718 ORTHO05D005838 2.8e-105 387.1 652 39.4
HPP92_023163 Vanilla planifolia HOM05D004718 ORTHO05D005838 1.2e-100 371.7 354 48.9
SMO367G0705 Selaginella moellendorffii HOM05D004718 ORTHO05D005838 1.8e-96 357.8 655 36.0
CBR_g19585 Chara braunii HOM05D004718 ORTHO05D005838 4.0e-96 356.7 759 32.0
TPR.G36582 Trifolium pratense HOM05D004718 ORTHO05D005838 2.6e-95 354.0 479 41.5
Cpa.g.sc42.63 Carica papaya HOM05D004718 ORTHO05D005838 3.7e-94 350.1 601 40.8
PGSC0003DMG402018450 Solanum tuberosum HOM05D004718 ORTHO05D005838 1.1e-82 312.0 282 54.6
TPR.G1019 Trifolium pratense HOM05D004718 ORTHO05D005838 8.9e-80 302.4 245 60.0
Hma1.2p1_0147F.1_g065870 Hydrangea macrophylla HOM05D004718 ORTHO05D005838 2.0e-71 274.6 249 54.2
Hma1.2p1_2965F.1_g330973 Hydrangea macrophylla HOM05D004718 ORTHO05D005838 2.0e-71 274.6 249 54.2
PGSC0003DMG401018450 Solanum tuberosum HOM05D004718 ORTHO05D005838 3.2e-69 267.3 501 38.7
RcHm_v2.0_Chr6g0312311 Rosa chinensis HOM05D004718 ORTHO05D005838 5.6e-66 256.5 205 58.5
Cpa.g.sc42.62 Carica papaya HOM05D004718 ORTHO05D005838 1.5e-63 248.4 186 63.4
PSO541G2610 Papaver somniferum HOM05D004718 ORTHO05D005838 2.1e-57 228.0 266 45.5
TPR.G35198 Trifolium pratense HOM05D004718 ORTHO05D005838 1.0e-54 219.2 239 48.1
Eucgr.E04340 Eucalyptus grandis HOM05D004718 ORTHO05D005838 4.2e-53 213.8 167 60.5
PSO782G5635 Papaver somniferum HOM05D004718 ORTHO05D005838 7.6e-47 193.0 211 50.2
PRCOL_00003856 Prasinoderma coloniale HOM05D004718 ORTHO05D005838 9.0e-40 169.5 763 23.9
HPP92_023162 Vanilla planifolia HOM05D004718 ORTHO05D005838 1.5e-39 168.7 232 44.8
A07p22110 Brassica napus HOM05D004718 ORTHO05D005838 6.1e-36 156.8 109 78.0
TPR.G21961 Trifolium pratense HOM05D004718 ORTHO05D005838 2.0e-23 115.2 250 36.4
Os03g0192800 Oryza sativa ssp. japonica HOM05D004718 ORTHO05D005838 1.5e-21 109.0 146 46.6
SEGI_05067 Sequoiadendron giganteum HOM05D004718 ORTHO05D005838 7.2e-21 106.7 210 34.3
Cre01.g030450 Chlamydomonas reinhardtii HOM05D004718 ORTHO05D005838 1.8e-16 92.0 220 28.6
TPR.G12064 Trifolium pratense HOM05D004718 ORTHO05D005838 1.9e-13 82.0 67 62.7
Lsat_1_v5_gn_4_68061 Lactuca sativa HOM05D004816 ORTHO05D006043 2.3e-11 75.1 91 40.7
Os02g0573400 Oryza sativa ssp. japonica HOM05D002714 ORTHO05D003085 4.5e-07 60.8 139 28.1
Zm00001eb244780 Zea mays HOM05D002714 ORTHO05D003085 5.0e-06 57.4 126 28.6


User provided reference genes

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