Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g02421 Brassica carinata HOM05D004718 ORTHO05D005838 7.7e-115 417.2 211 100.0
C03p65460 Brassica napus HOM05D004718 ORTHO05D005838 7.7e-115 417.2 211 100.0
A06p28290 Brassica napus HOM05D004718 ORTHO05D005838 9.2e-108 393.7 209 95.7
BraA06t25772Z Brassica rapa HOM05D004718 ORTHO05D005838 9.2e-108 393.7 209 95.7
BcaC07g39424 Brassica carinata HOM05D004718 ORTHO05D005838 1.1e-95 353.6 215 83.7
C08p24600 Brassica napus HOM05D004718 ORTHO05D005838 1.1e-95 353.6 215 83.7
Sp5g12510 Schrenkiella parvula HOM05D004718 ORTHO05D005838 1.4e-95 353.2 215 84.2
Thhalv10010085m.g Eutrema salsugineum HOM05D004718 ORTHO05D005838 2.3e-95 352.4 213 83.6
AL5G29440 Arabidopsis lyrata HOM05D004718 ORTHO05D005838 4.4e-94 348.2 215 80.9
BraA06t24901Z Brassica rapa HOM05D004718 ORTHO05D005838 5.8e-94 347.8 215 82.3
A06p18130 Brassica napus HOM05D004718 ORTHO05D005838 1.7e-93 346.3 215 81.9
BolC8t50076H Brassica oleracea HOM05D004718 ORTHO05D005838 2.9e-93 345.5 215 82.8
Carub.0005s1593 Capsella rubella HOM05D004718 ORTHO05D005838 3.7e-93 345.1 215 81.4
AT3G49600 Arabidopsis thaliana HOM05D004718 ORTHO05D005838 8.3e-93 344.0 215 80.9
BcaB01g00691 Brassica carinata HOM05D004718 ORTHO05D005838 5.4e-92 341.3 215 80.9
BcaB02g09597 Brassica carinata HOM05D004718 ORTHO05D005838 6.4e-85 317.8 211 78.7
THA.LOC104799000 Tarenaya hassleriana HOM05D004718 ORTHO05D005838 9.9e-78 293.9 219 68.0
CARHR158610 Cardamine hirsuta HOM05D004718 ORTHO05D005838 1.9e-76 289.7 167 85.6
Aa31LG4G18090 Aethionema arabicum HOM05D004718 ORTHO05D005838 1.1e-71 273.9 187 74.9
Gohir.D13G185401 Gossypium hirsutum HOM05D004718 ORTHO05D005838 6.6e-66 254.6 216 60.6
Gorai.013G211400 Gossypium raimondii HOM05D004718 ORTHO05D005838 6.6e-66 254.6 216 60.6
Atru.chr12.843 Acer truncatum HOM05D004718 ORTHO05D005838 3.3e-65 252.3 218 56.0
Duzib168G2024 Durio zibethinus HOM05D004718 ORTHO05D005838 3.3e-65 252.3 216 59.3
Manes.18G079200 Manihot esculenta HOM05D004718 ORTHO05D005838 3.3e-65 252.3 215 57.7
Gohir.A13G181900 Gossypium hirsutum HOM05D004718 ORTHO05D005838 4.3e-65 251.9 216 60.2
Thecc.09G001900 Theobroma cacao HOM05D004718 ORTHO05D005838 4.3e-65 251.9 216 60.2
COL.COLO4_18636 Corchorus olitorius HOM05D004718 ORTHO05D005838 4.8e-64 248.4 216 59.7
Ciclev10007306m.g Citrus clementina HOM05D004718 ORTHO05D005838 1.2e-62 243.8 182 64.8
EL10Ac2g03649 Beta vulgaris HOM05D004718 ORTHO05D005838 1.3e-61 240.4 208 55.8
GSVIVG01035602001 Vitis vinifera HOM05D004718 ORTHO05D005838 1.3e-61 240.4 218 57.3
Sc06g0001390 Simmondsia chinensis HOM05D004718 ORTHO05D005838 3.8e-61 238.8 216 55.1
RcHm_v2.0_Chr6g0312261 Rosa chinensis HOM05D004718 ORTHO05D005838 1.1e-60 237.3 218 55.0
QL12p024639 Quercus lobata HOM05D004718 ORTHO05D005838 1.4e-60 236.9 218 56.0
Actinidia03322 Actinidia chinensis HOM05D004718 ORTHO05D005838 1.9e-60 236.5 222 55.0
CsaV3_2G031540 Cucumis sativus L. HOM05D004718 ORTHO05D005838 4.2e-60 235.3 215 56.3
ClCG08G012790 Citrullus lanatus HOM05D004718 ORTHO05D005838 5.4e-60 235.0 215 55.8
MELO3C011203.2 Cucumis melo HOM05D004718 ORTHO05D005838 5.4e-60 235.0 215 56.3
Peaxi162Scf00583g00537 Petunia axillaris HOM05D004718 ORTHO05D005838 7.1e-60 234.6 198 57.6
TAR624G0199 Trochodendron aralioides HOM05D004718 ORTHO05D005838 9.3e-60 234.2 182 62.6
FvH4_2g30650 Fragaria vesca HOM05D004718 ORTHO05D005838 1.2e-59 233.8 217 53.5
MD15G1110500 Malus domestica HOM05D004718 ORTHO05D005838 1.2e-59 233.8 219 54.8
PGR142G1098 Punica granatum HOM05D004718 ORTHO05D005838 1.6e-59 233.4 217 54.8
Prupe.1G462800 Prunus persica HOM05D004718 ORTHO05D005838 2.1e-59 233.0 219 54.8
Ah.11g044230 Amaranthus hybridus HOM05D004718 ORTHO05D005838 3.5e-59 232.3 212 54.2
Dinv09445 Davidia involucrata HOM05D004718 ORTHO05D005838 3.5e-59 232.3 218 55.5
Potri.005G179500 Populus trichocarpa HOM05D004718 ORTHO05D005838 3.5e-59 232.3 221 54.8
DCAR_000697 Daucus carota HOM05D004718 ORTHO05D005838 4.6e-59 231.9 173 64.2
TWI32G0049 Tripterygium wilfordii HOM05D004718 ORTHO05D005838 6.0e-59 231.5 217 55.3
CSS0012298 Camellia sinensis var. sinensis HOM05D004718 ORTHO05D005838 7.9e-59 231.1 222 54.1
AUR62028027 Chenopodium quinoa HOM05D004718 ORTHO05D005838 1.0e-58 230.7 212 52.8
MD08G1133600 Malus domestica HOM05D004718 ORTHO05D005838 1.0e-58 230.7 218 52.8
Nn8g40158 Nelumbo nucifera HOM05D004718 ORTHO05D005838 1.3e-58 230.3 219 55.7
CSS0022336 Camellia sinensis var. sinensis HOM05D004718 ORTHO05D005838 2.3e-58 229.6 222 53.6
CANSAT25G2838 Cannabis sativa HOM05D004718 ORTHO05D005838 3.0e-58 229.2 213 56.8
AUR62020697 Chenopodium quinoa HOM05D004718 ORTHO05D005838 3.0e-58 229.2 212 52.8
Potri.002G081600 Populus trichocarpa HOM05D004718 ORTHO05D005838 5.1e-58 228.4 212 56.1
Sed0007031 Sechium edule HOM05D004718 ORTHO05D005838 5.1e-58 228.4 176 63.6
Sed0011780 Sechium edule HOM05D004718 ORTHO05D005838 5.1e-58 228.4 176 62.5
CiPaw.07G215000 Carya illinoinensis HOM05D004718 ORTHO05D005838 6.7e-58 228.0 218 54.1
CAN.G30.25 Capsicum annuum HOM05D004718 ORTHO05D005838 3.3e-57 225.7 199 54.8
Sabra02G0063900 Salix brachista HOM05D004718 ORTHO05D005838 4.3e-57 225.3 216 55.6
Solyc03g078390.3 Solanum lycopersicum HOM05D004718 ORTHO05D005838 4.3e-57 225.3 213 53.1
Sopen03g021200 Solanum pennellii HOM05D004718 ORTHO05D005838 4.3e-57 225.3 213 53.1
PGSC0003DMG402018450 Solanum tuberosum HOM05D004718 ORTHO05D005838 7.4e-57 224.6 199 54.8
Phvul.009G100000 Phaseolus vulgaris HOM05D004718 ORTHO05D005838 9.6e-57 224.2 202 57.4
Cc07_g17410 Coffea canephora HOM05D004718 ORTHO05D005838 1.3e-56 223.8 198 57.1
Glyma.06G075500 Glycine max HOM05D004718 ORTHO05D005838 1.6e-56 223.4 202 56.9
Glyma.04G074300 Glycine max HOM05D004718 ORTHO05D005838 2.1e-56 223.0 202 56.9
ECA240G2491 Erigeron canadensis HOM05D004718 ORTHO05D005838 4.8e-56 221.9 219 52.5
Ca_15681_v3 Cicer arietinum L. HOM05D004718 ORTHO05D005838 6.2e-56 221.5 177 62.7
Migut.H01115 Erythranthe guttata HOM05D004718 ORTHO05D005838 1.8e-55 219.9 198 54.5
TPR.G12432 Trifolium pratense HOM05D004718 ORTHO05D005838 1.8e-55 219.9 177 62.1
Psat5g025880 Pisum sativum HOM05D004718 ORTHO05D005838 4.0e-55 218.8 177 62.1
Lalb_Chr14g0362131 Lupinus albus HOM05D004718 ORTHO05D005838 6.9e-55 218.0 175 62.3
Aqoxy7G00911 Aquilegia oxysepala HOM05D004718 ORTHO05D005838 9.0e-55 217.6 192 56.2
MSTRG.2684 Avicennia marina HOM05D004718 ORTHO05D005838 1.2e-54 217.2 199 55.3
Glyma.14G132500 Glycine max HOM05D004718 ORTHO05D005838 1.2e-54 217.2 174 60.9
Lj5g0017014 Lotus japonicus HOM05D004718 ORTHO05D005838 1.2e-54 217.2 175 61.1
Oeu047653.1 Olea europaea HOM05D004718 ORTHO05D005838 1.2e-54 217.2 219 51.1
Rhsim04G0220700 Rhododendron simsii HOM05D004718 ORTHO05D005838 1.5e-54 216.9 218 50.0
Lj7A755G38 Lonicera japonica HOM05D004718 ORTHO05D005838 2.0e-54 216.5 195 54.4
CDE06G1884 Ceratophyllum demersum HOM05D004718 ORTHO05D005838 1.0e-53 214.2 173 60.7
VMungo1309G0968 Vigna mungo HOM05D004718 ORTHO05D005838 1.0e-53 214.2 218 53.2
Medtr3g108660 Medicago truncatula HOM05D004718 ORTHO05D005838 1.3e-53 213.8 204 56.4
Glyma.17G201000 Glycine max HOM05D004718 ORTHO05D005838 2.2e-53 213.0 218 52.8
unitig_699.g19716 Utricularia gibba HOM05D004718 ORTHO05D005838 3.8e-53 212.2 184 54.9
HanXRQChr03g0082331 Helianthus annuus HOM05D004718 ORTHO05D005838 1.1e-52 210.7 186 57.0
Lalb_Chr08g0243651 Lupinus albus HOM05D004718 ORTHO05D005838 1.1e-52 210.7 221 51.6
Hma1.2p1_0147F.1_g065850 Hydrangea macrophylla HOM05D004718 ORTHO05D005838 1.9e-52 209.9 215 51.2
ATR0006G074 Amborella trichopoda HOM05D004718 ORTHO05D005838 3.2e-52 209.1 209 53.1
CDE04G3074 Ceratophyllum demersum HOM05D004718 ORTHO05D005838 3.2e-52 209.1 183 57.9
arahy.Tifrunner.gnm1.ann1.N8XBBJ Arachis hypogaea HOM05D004718 ORTHO05D005838 4.2e-52 208.8 181 57.5
Ca_12884_v3 Cicer arietinum L. HOM05D004718 ORTHO05D005838 4.2e-52 208.8 175 58.9
arahy.Tifrunner.gnm1.ann1.7TNR6F Arachis hypogaea HOM05D004718 ORTHO05D005838 7.1e-52 208.0 181 57.5
PSO017G4020 Papaver somniferum HOM05D004718 ORTHO05D005838 7.1e-52 208.0 203 55.7
Medtr1g010040 Medicago truncatula HOM05D004718 ORTHO05D005838 9.3e-52 207.6 175 58.3
MBI07_g41265_MAGBIO Magnolia biondii HOM05D004718 ORTHO05D005838 1.6e-51 206.8 169 62.7
Haze_21689 Corylus avellana HOM05D004718 ORTHO05D005838 2.1e-51 206.5 190 57.4
FAN20G1074 Fragaria x ananassa HOM05D003231 ORTHO05D005838 2.7e-51 206.1 197 50.8
Nitab4.5_0000004g0240 Nicotiana tabacum HOM05D004718 ORTHO05D005838 4.6e-51 205.3 184 56.5
Nitab4.5_0000964g0050 Nicotiana tabacum HOM05D004718 ORTHO05D005838 6.0e-51 204.9 184 56.5
PSO421G0298 Papaver somniferum HOM05D004718 ORTHO05D005838 6.0e-51 204.9 197 54.8
FAN27G1892 Fragaria x ananassa HOM05D004718 ORTHO05D005838 7.9e-51 204.5 213 49.8
Psat6g031760 Pisum sativum HOM05D004718 ORTHO05D005838 1.8e-50 203.4 200 54.0
Cpa.g.sc42.62 Carica papaya HOM05D004718 ORTHO05D005838 3.0e-50 202.6 240 49.2
Zm00001eb008340 Zea mays HOM05D004718 ORTHO05D005838 3.0e-50 202.6 178 56.7
Eucgr.E04340 Eucalyptus grandis HOM05D004718 ORTHO05D005838 2.5e-49 199.5 149 63.1
PSO063G2513 Papaver somniferum HOM05D004718 ORTHO05D005838 4.3e-49 198.7 192 55.2
Phvul.001G057700 Phaseolus vulgaris HOM05D004718 ORTHO05D005838 2.1e-48 196.4 221 48.9
Lsat_1_v5_gn_5_59280 Lactuca sativa HOM05D004718 ORTHO05D005838 5.3e-47 191.8 195 51.3
SGA_v2.0_scaffold76G25169 Striga asiatica HOM05D004718 ORTHO05D005838 1.2e-46 190.7 194 52.1
HPP92_023163 Vanilla planifolia HOM05D004718 ORTHO05D005838 4.5e-46 188.7 205 49.3
TPR.G1019 Trifolium pratense HOM05D004718 ORTHO05D005838 1.1e-41 174.1 177 52.0
Zm00001eb310400 Zea mays HOM05D004718 ORTHO05D005838 2.8e-40 169.5 193 48.2
Pp3c16_5610 Physcomitrium patens HOM05D004718 ORTHO05D005838 6.3e-40 168.3 174 53.4
Mapoly0015s0043 Marchantia polymorpha HOM05D004718 ORTHO05D005838 2.6e-38 162.9 188 50.0
SMO367G0705 Selaginella moellendorffii HOM05D004718 ORTHO05D005838 1.4e-36 157.1 144 56.2
vmacro12746 Vaccinium macrocarpon HOM05D004718 ORTHO05D005838 5.1e-34 148.7 121 59.5
CBR_g19585 Chara braunii HOM05D004718 ORTHO05D005838 7.4e-33 144.8 201 44.8
Hund19371 Selenicereus undatus HOM05D004718 ORTHO05D005838 4.1e-31 139.0 189 40.7
VMungo0647G1764 Vigna mungo HOM05D004718 ORTHO05D005838 1.1e-28 131.0 171 42.7
TPR.G36582 Trifolium pratense HOM05D004718 ORTHO05D005838 1.1e-23 114.4 175 39.4
SEGI_25158 Sequoiadendron giganteum HOM05D004718 ORTHO05D046641 2.4e-23 113.2 140 48.6
Os03g0192900 Oryza sativa ssp. japonica HOM05D004718 ORTHO05D005838 4.1e-23 112.5 89 65.2
Actinidia25724 Actinidia chinensis HOM05D004718 ORTHO05D005838 1.9e-20 103.6 73 65.8
SEGI_25079 Sequoiadendron giganteum HOM05D004718 ORTHO05D015872 4.7e-19 99.0 87 50.6
PSO782G5635 Papaver somniferum HOM05D004718 ORTHO05D005838 1.0e-10 71.2 76 48.7
PSO541G2610 Papaver somniferum HOM05D004718 ORTHO05D005838 2.3e-10 70.1 97 43.3
Cre01.g030450 Chlamydomonas reinhardtii HOM05D004718 ORTHO05D005838 8.8e-10 68.2 169 31.4
COL.COLO4_16463 Corchorus olitorius HOM05D004718 ORTHO05D155331 2.8e-08 63.2 37 73.0
CARHR158620 Cardamine hirsuta HOM05D004718 ORTHO05D005838 4.1e-07 59.3 51 62.7
RcHm_v2.0_Chr6g0312311 Rosa chinensis HOM05D004718 ORTHO05D005838 7.0e-07 58.5 81 38.3
AL8G22480 Arabidopsis lyrata HOM05D004718 ORTHO05D005838 2.0e-06 57.0 53 56.6


User provided reference genes

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