Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g02292 Brassica carinata HOM05D003823 ORTHO05D004866 2.2e-108 395.6 191 100.0
C03p66970 Brassica napus HOM05D003823 ORTHO05D004866 2.2e-108 395.6 191 100.0
BolC3t18970H Brassica oleracea HOM05D003823 ORTHO05D004866 2.2e-108 395.6 191 100.0
A06p27290 Brassica napus HOM05D003823 ORTHO05D004866 1.8e-107 392.5 191 99.0
BraA06t25670Z Brassica rapa HOM05D003823 ORTHO05D004866 1.8e-107 392.5 191 99.0
BcaB01g00874 Brassica carinata HOM05D003823 ORTHO05D004866 9.2e-107 390.2 191 98.4
BcaC01g01774 Brassica carinata HOM05D003823 ORTHO05D004866 9.2e-107 390.2 191 97.9
C03p72020 Brassica napus HOM05D003823 ORTHO05D004866 9.2e-107 390.2 191 97.9
BolC3t19499H Brassica oleracea HOM05D003823 ORTHO05D004866 9.2e-107 390.2 191 97.9
Sp5g14150 Schrenkiella parvula HOM05D003823 ORTHO05D004866 3.5e-106 388.3 191 97.9
Thhalv10010746m.g Eutrema salsugineum HOM05D003823 ORTHO05D004866 1.0e-105 386.7 191 97.4
A06p19840 Brassica napus HOM05D003823 ORTHO05D004866 1.3e-105 386.3 191 97.4
BraA06t25064Z Brassica rapa HOM05D003823 ORTHO05D004866 1.3e-105 386.3 191 97.4
Aa31LG4G16460 Aethionema arabicum HOM05D003823 ORTHO05D004866 5.0e-105 384.4 191 95.3
BcaB02g10689 Brassica carinata HOM05D003823 ORTHO05D004866 6.6e-105 384.0 191 96.9
CARHR156490 Cardamine hirsuta HOM05D003823 ORTHO05D004866 6.6e-105 384.0 191 95.8
AL5G27100 Arabidopsis lyrata HOM05D003823 ORTHO05D004866 6.2e-103 377.5 191 94.8
AT3G47810 Arabidopsis thaliana HOM05D003823 ORTHO05D004866 1.4e-102 376.3 191 94.2
THA.LOC104819434 Tarenaya hassleriana HOM05D003823 ORTHO05D004866 2.6e-101 372.1 189 93.7
Lalb_Chr25g0280071 Lupinus albus HOM05D003823 ORTHO05D004866 4.4e-101 371.3 191 91.6
CANSAT80G0583 Cannabis sativa HOM05D003823 ORTHO05D004866 1.7e-100 369.4 190 91.6
Aqoxy3G03322 Aquilegia oxysepala HOM05D003823 ORTHO05D004866 2.9e-100 368.6 188 91.5
Glyma.02G268600 Glycine max HOM05D003823 ORTHO05D004866 2.9e-100 368.6 189 92.6
Medtr3g080480 Medicago truncatula HOM05D003823 ORTHO05D004866 2.9e-100 368.6 189 91.5
VMungo0647G1166 Vigna mungo HOM05D003823 ORTHO05D004866 3.7e-100 368.2 189 92.1
Phvul.008G213700 Phaseolus vulgaris HOM05D003823 ORTHO05D004866 4.9e-100 367.9 189 91.5
Gohir.A11G029891 Gossypium hirsutum HOM05D003823 ORTHO05D004866 6.4e-100 367.5 187 92.5
Cpa.g.sc388.5 Carica papaya HOM05D003823 ORTHO05D004866 8.3e-100 367.1 189 91.5
Ciclev10022411m.g Citrus clementina HOM05D003823 ORTHO05D004866 8.3e-100 367.1 189 91.5
Ca_16285_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 1.1e-99 366.7 189 91.5
PSO017G2864 Papaver somniferum HOM05D003823 ORTHO05D004866 1.1e-99 366.7 189 91.0
Duzib084G0821 Durio zibethinus HOM05D003823 ORTHO05D004866 1.4e-99 366.3 189 91.0
Manes.14G076100 Manihot esculenta HOM05D003823 ORTHO05D004866 1.4e-99 366.3 187 92.0
THA.LOC104821437 Tarenaya hassleriana HOM05D003823 ORTHO05D004866 1.4e-99 366.3 189 91.5
TPR.G25673 Trifolium pratense HOM05D003823 ORTHO05D004866 1.4e-99 366.3 189 91.0
GSVIVG01020043001 Vitis vinifera HOM05D003823 ORTHO05D004866 1.4e-99 366.3 189 89.9
Carub.0005s1392 Capsella rubella HOM05D003823 ORTHO05D004866 1.9e-99 365.9 181 96.7
AUR62027457 Chenopodium quinoa HOM05D003823 ORTHO05D004866 1.9e-99 365.9 188 91.5
AUR62031242 Chenopodium quinoa HOM05D003823 ORTHO05D004866 1.9e-99 365.9 188 91.5
Ca_06062_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 1.9e-99 365.9 189 91.5
Ca_30714_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 1.9e-99 365.9 189 91.5
Glyma.14G048800 Glycine max HOM05D003823 ORTHO05D004866 1.9e-99 365.9 189 92.1
Oeu022626.1 Olea europaea HOM05D003823 ORTHO05D004866 2.4e-99 365.5 188 89.9
Os02g0265400 Oryza sativa ssp. japonica HOM05D003823 ORTHO05D004866 2.4e-99 365.5 185 93.0
PGR083G1126 Punica granatum HOM05D003823 ORTHO05D004866 2.4e-99 365.5 188 91.0
Gohir.D11G033300 Gossypium hirsutum HOM05D003823 ORTHO05D004866 3.2e-99 365.2 187 92.0
Gorai.007G036100 Gossypium raimondii HOM05D003823 ORTHO05D004866 3.2e-99 365.2 187 92.0
PSO478G3470 Papaver somniferum HOM05D003823 ORTHO05D004866 3.2e-99 365.2 189 90.5
CiPaw.11G041500 Carya illinoinensis HOM05D003823 ORTHO05D004866 4.1e-99 364.8 185 93.0
ClCG06G016300 Citrullus lanatus HOM05D003823 ORTHO05D004866 4.1e-99 364.8 186 91.9
MELO3C017163.2 Cucumis melo HOM05D003823 ORTHO05D004866 4.1e-99 364.8 186 91.9
CsaV3_1G002230 Cucumis sativus L. HOM05D003823 ORTHO05D004866 4.1e-99 364.8 186 91.9
Psat2g025840 Pisum sativum HOM05D003823 ORTHO05D004866 4.1e-99 364.8 189 90.5
Sed0017565 Sechium edule HOM05D003823 ORTHO05D004866 4.1e-99 364.8 186 91.9
Psat5g111480 Pisum sativum HOM05D003823 ORTHO05D004866 5.4e-99 364.4 189 91.0
SalBow6G5762 Salvia bowleyana HOM05D003823 ORTHO05D004866 7.0e-99 364.0 190 88.9
FvH4_5g15250 Fragaria vesca HOM05D003823 ORTHO05D004866 9.2e-99 363.6 189 90.5
FAN04G0558 Fragaria x ananassa HOM05D003823 ORTHO05D004866 9.2e-99 363.6 189 90.5
FAN08G0194 Fragaria x ananassa HOM05D003823 ORTHO05D004866 9.2e-99 363.6 189 90.5
FAN13G2005 Fragaria x ananassa HOM05D003823 ORTHO05D004866 9.2e-99 363.6 189 90.5
FAN18G4237 Fragaria x ananassa HOM05D003823 ORTHO05D004866 9.2e-99 363.6 189 90.5
Medtr5g085380 Medicago truncatula HOM05D003823 ORTHO05D004866 9.2e-99 363.6 189 89.9
Hund02662 Selenicereus undatus HOM05D003823 ORTHO05D004866 9.2e-99 363.6 190 88.4
PGSC0003DMG400018144 Solanum tuberosum HOM05D003823 ORTHO05D004866 9.2e-99 363.6 188 90.4
TWI81G0804 Tripterygium wilfordii HOM05D003823 ORTHO05D004866 9.2e-99 363.6 191 91.1
Cfa018968 Carpinus fangiana HOM05D000046 ORTHO05D004866 1.2e-98 363.2 187 91.4
RcHm_v2.0_Chr7g0180841 Rosa chinensis HOM05D003823 ORTHO05D004866 1.2e-98 363.2 187 90.9
MBI02_g36598_MAGBIO Magnolia biondii HOM05D003823 ORTHO05D004866 1.6e-98 362.8 189 89.9
Manes.05G098825 Manihot esculenta HOM05D003823 ORTHO05D004866 1.6e-98 362.8 189 88.9
Potri.001G354000 Populus trichocarpa HOM05D003823 ORTHO05D004866 1.6e-98 362.8 187 90.9
TWI60G1055 Tripterygium wilfordii HOM05D003823 ORTHO05D004866 1.6e-98 362.8 187 90.9
Cc04_g17180 Coffea canephora HOM05D003823 ORTHO05D004866 2.0e-98 362.5 189 89.9
Duzib268G0082 Durio zibethinus HOM05D003823 ORTHO05D004866 2.0e-98 362.5 189 88.4
Gohir.A12G166100 Gossypium hirsutum HOM05D003823 ORTHO05D004866 2.0e-98 362.5 189 88.9
QL10p016165 Quercus lobata HOM05D003823 ORTHO05D004866 2.0e-98 362.5 187 90.9
Thecc.02G351700 Theobroma cacao HOM05D003823 ORTHO05D004866 2.0e-98 362.5 189 88.4
vmacro18202 Vaccinium macrocarpon HOM05D003823 ORTHO05D004866 2.0e-98 362.5 188 89.4
MD06G1190100 Malus domestica HOM05D003823 ORTHO05D004866 2.7e-98 362.1 187 90.4
MD14G1197000 Malus domestica HOM05D003823 ORTHO05D004866 2.7e-98 362.1 187 90.4
Nitab4.5_0000785g0070 Nicotiana tabacum HOM05D003823 ORTHO05D004866 2.7e-98 362.1 188 90.4
Nitab4.5_0010010g0030 Nicotiana tabacum HOM05D003823 ORTHO05D004866 2.7e-98 362.1 188 90.4
Peaxi162Scf00009g00217 Petunia axillaris HOM05D003823 ORTHO05D004866 2.7e-98 362.1 184 92.4
Prupe.5G189200 Prunus persica HOM05D003823 ORTHO05D004866 2.7e-98 362.1 189 89.9
TPR.G29042 Trifolium pratense HOM05D003823 ORTHO05D004866 2.7e-98 362.1 188 91.0
Atru.chr11.1839 Acer truncatum HOM05D003823 ORTHO05D004866 3.5e-98 361.7 189 88.9
Solyc03g113020.3 Solanum lycopersicum HOM05D003823 ORTHO05D004866 3.5e-98 361.7 188 89.4
Sopen03g032100 Solanum pennellii HOM05D003823 ORTHO05D004866 3.5e-98 361.7 188 89.4
Thecc.03G082400 Theobroma cacao HOM05D003823 ORTHO05D004866 3.5e-98 361.7 187 90.9
Zm00001eb203950 Zea mays HOM05D003823 ORTHO05D004866 3.5e-98 361.7 185 91.9
COL.COLO4_22965 Corchorus olitorius HOM05D003823 ORTHO05D004866 6.0e-98 360.9 186 88.7
Sc12g0006240 Simmondsia chinensis HOM05D003823 ORTHO05D004866 6.0e-98 360.9 187 89.8
Gohir.D12G169500 Gossypium hirsutum HOM05D003823 ORTHO05D004866 7.8e-98 360.5 188 88.3
Nn8g40950 Nelumbo nucifera HOM05D003823 ORTHO05D004866 7.8e-98 360.5 190 90.0
TAR622G1107 Trochodendron aralioides HOM05D003823 ORTHO05D004866 7.8e-98 360.5 186 90.3
CSS0031728 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.0e-97 360.1 186 89.2
CSS0041610 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.0e-97 360.1 186 89.2
CSS0049183 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.0e-97 360.1 186 89.2
Duzib251G0021 Durio zibethinus HOM05D003823 ORTHO05D004866 1.0e-97 360.1 189 88.9
Lsat_1_v5_gn_2_88881 Lactuca sativa HOM05D003823 ORTHO05D004866 1.3e-97 359.8 187 89.8
Sabra16G0232900 Salix brachista HOM05D003823 ORTHO05D004866 1.3e-97 359.8 187 90.4
TAR374G1522 Trochodendron aralioides HOM05D003823 ORTHO05D004866 1.3e-97 359.8 186 90.3
Actinidia02709 Actinidia chinensis HOM05D003823 ORTHO05D004866 1.7e-97 359.4 185 90.3
CAN.G1305.7 Capsicum annuum HOM05D003823 ORTHO05D004866 2.3e-97 359.0 188 88.8
Potri.011G077900 Populus trichocarpa HOM05D003823 ORTHO05D004866 2.3e-97 359.0 187 89.3
Rhsim08G0157700 Rhododendron simsii HOM05D003823 ORTHO05D004866 3.0e-97 358.6 188 88.3
MSTRG.9636 Avicennia marina HOM05D003823 ORTHO05D004866 3.9e-97 358.2 188 88.8
EL10Ac8g19266 Beta vulgaris HOM05D003823 ORTHO05D004866 3.9e-97 358.2 190 89.5
Lj4g0027914 Lotus japonicus HOM05D003823 ORTHO05D004866 3.9e-97 358.2 186 89.8
Nn4g23085 Nelumbo nucifera HOM05D003823 ORTHO05D004866 3.9e-97 358.2 190 89.5
ATR0564G299 Amborella trichopoda HOM05D003823 ORTHO05D004866 5.0e-97 357.8 186 90.9
HPP92_020326 Vanilla planifolia HOM05D003823 ORTHO05D004866 5.0e-97 357.8 199 86.9
Atru.chr4.927 Acer truncatum HOM05D003823 ORTHO05D004866 6.6e-97 357.5 189 88.4
Cc07_g03190 Coffea canephora HOM05D003823 ORTHO05D004866 6.6e-97 357.5 188 89.4
ECA238G0538 Erigeron canadensis HOM05D003823 ORTHO05D004866 6.6e-97 357.5 187 88.2
HanXRQChr02g0056361 Helianthus annuus HOM05D003823 ORTHO05D004866 6.6e-97 357.5 187 88.8
Actinidia37644 Actinidia chinensis HOM05D003823 ORTHO05D004866 8.6e-97 357.1 189 88.9
Dinv38684 Davidia involucrata HOM05D003823 ORTHO05D004866 8.6e-97 357.1 188 88.3
Gorai.008G182100 Gossypium raimondii HOM05D003823 ORTHO05D004866 8.6e-97 357.1 188 87.2
HanXRQChr14g0449901 Helianthus annuus HOM05D003823 ORTHO05D004866 8.6e-97 357.1 187 88.8
Dinv06526 Davidia involucrata HOM05D003823 ORTHO05D004866 1.1e-96 356.7 188 87.2
Migut.D02333 Erythranthe guttata HOM05D003823 ORTHO05D004866 1.1e-96 356.7 184 89.7
Oeu006179.1 Olea europaea HOM05D003823 ORTHO05D004866 1.1e-96 356.7 188 88.3
Ciclev10032832m.g Citrus clementina HOM05D003823 ORTHO05D004866 1.9e-96 355.9 189 87.8
Eucgr.K02462 Eucalyptus grandis HOM05D003823 ORTHO05D004866 2.5e-96 355.5 208 83.2
Sed0002791 Sechium edule HOM05D003823 ORTHO05D004866 2.5e-96 355.5 187 88.8
Rhsim08G0068000 Rhododendron simsii HOM05D003823 ORTHO05D004866 9.5e-96 353.6 200 84.0
DCAR_026066 Daucus carota HOM05D003823 ORTHO05D004866 1.2e-95 353.2 186 89.8
CDE02G3183 Ceratophyllum demersum HOM05D003823 ORTHO05D004866 1.6e-95 352.8 192 86.5
Migut.D02334 Erythranthe guttata HOM05D003823 ORTHO05D004866 2.1e-95 352.4 186 88.7
Zm00001eb237810 Zea mays HOM05D003823 ORTHO05D004866 2.8e-95 352.1 185 89.2
Dinv19933 Davidia involucrata HOM05D003823 ORTHO05D004866 4.7e-95 351.3 187 87.7
Lj5A113G71 Lonicera japonica HOM05D003823 ORTHO05D004866 5.2e-94 347.8 184 88.0
SMO116G0153 Selaginella moellendorffii HOM05D003823 ORTHO05D004866 1.3e-92 343.2 189 84.1
Mapoly0081s0078 Marchantia polymorpha HOM05D003823 ORTHO05D004866 8.3e-92 340.5 182 84.6
Pp3c11_12990 Physcomitrium patens HOM05D003823 ORTHO05D004866 1.0e-89 333.6 182 85.2
Haze_07352 Corylus avellana HOM05D003823 ORTHO05D004866 2.3e-89 332.4 253 67.2
CSS0031561 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 3.3e-88 328.6 183 86.9
CBR_g29439 Chara braunii HOM05D003823 ORTHO05D004866 1.6e-87 326.2 187 78.1
SGA_v2.0_scaffold193G40709 Striga asiatica HOM05D003823 ORTHO05D004866 4.4e-85 318.2 191 79.1
Pp3c7_13070 Physcomitrium patens HOM05D003823 ORTHO05D004866 9.9e-85 317.0 182 81.3
GSVIVG01008037001 Vitis vinifera HOM05D003823 ORTHO05D004866 2.2e-84 315.8 162 90.1
CSS0019545 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.6e-79 299.7 188 75.5
CDE09G0968 Ceratophyllum demersum HOM05D005655 ORTHO05D007386 1.8e-78 296.2 152 88.8
QL93p0043_0002 Quercus lobata HOM05D003823 ORTHO05D004866 3.0e-73 278.9 143 90.9
MBI05_g00394_MAGBIO Magnolia biondii HOM05D000046 ORTHO05D000195 9.6e-72 273.9 143 86.7
Nitab4.5_0012727g0030 Nicotiana tabacum HOM05D003823 ORTHO05D004866 3.6e-71 271.9 142 90.1
SEGI_34945 Sequoiadendron giganteum HOM05D003823 ORTHO05D004866 8.1e-71 270.8 140 88.6
Actinidia17538 Actinidia chinensis HOM05D003823 ORTHO05D004866 4.9e-68 261.5 129 91.5
Eucgr.G00164 Eucalyptus grandis HOM05D003823 ORTHO05D004866 5.6e-64 248.1 136 84.6
Lj4A511G17 Lonicera japonica HOM05D003823 ORTHO05D004866 3.6e-63 245.4 188 68.1
CSS0004961 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 4.8e-63 245.0 187 66.8
Manes.01G188500 Manihot esculenta HOM05D003823 ORTHO05D004866 4.8e-63 245.0 128 84.4
Eucgr.G00114 Eucalyptus grandis HOM05D003823 ORTHO05D004866 1.4e-62 243.4 150 78.7
TAR729G0007 Trochodendron aralioides HOM05D003823 ORTHO05D004866 1.4e-62 243.4 164 73.8
MCO13G641 Micromonas commoda HOM05D003823 ORTHO05D004866 3.8e-60 235.3 189 54.0
Cre12.g499900 Chlamydomonas reinhardtii HOM05D003823 ORTHO05D004866 6.0e-58 228.0 189 56.6
Lj4A501G12 Lonicera japonica HOM05D003823 ORTHO05D004866 2.5e-51 206.1 166 65.1
Atru.chr9.2289 Acer truncatum HOM05D003823 ORTHO05D004866 3.0e-49 199.1 157 67.5
Gorai.007G237600 Gossypium raimondii HOM05D003823 ORTHO05D004866 3.4e-45 185.7 90 90.0
Gohir.D02G085100 Gossypium hirsutum HOM05D003823 ORTHO05D004866 4.2e-43 178.7 115 73.0
CSS0033378 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 9.3e-43 177.6 90 86.7
Gohir.A08G078101 Gossypium hirsutum HOM05D003823 ORTHO05D004866 7.9e-42 174.5 103 76.7
Gorai.005G191600 Gossypium raimondii HOM05D003823 ORTHO05D004866 2.3e-41 172.9 87 86.2
Gorai.003G098000 Gossypium raimondii HOM05D003823 ORTHO05D017994 3.9e-41 172.2 87 86.2
Gohir.D06G139701 Gossypium hirsutum HOM05D003823 ORTHO05D017994 8.7e-41 171.0 87 86.2
Gorai.008G100600 Gossypium raimondii HOM05D003823 ORTHO05D004866 1.5e-40 170.2 87 86.2
Gohir.A05G198301 Gossypium hirsutum HOM05D003823 ORTHO05D004866 2.5e-40 169.5 87 85.1
Gohir.D03G122233 Gossypium hirsutum HOM05D003823 ORTHO05D004866 2.5e-40 169.5 87 85.1
Gohir.D06G082500 Gossypium hirsutum HOM05D003823 ORTHO05D017994 5.3e-38 161.8 87 83.9
Lj4g0026130 Lotus japonicus HOM05D003823 ORTHO05D004866 5.9e-37 158.3 99 81.8
Thecc.02G319100 Theobroma cacao HOM05D003823 ORTHO05D004866 3.2e-35 152.5 142 59.2
CSS0038842 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 4.2e-35 152.1 157 52.2
Gorai.013G138400 Gossypium raimondii HOM05D003823 ORTHO05D004866 3.6e-34 149.1 79 82.3
unitig_0.g782 Utricularia gibba HOM05D003823 ORTHO05D004866 3.7e-31 139.0 69 82.6
Sabra15G0049800 Salix brachista HOM05D003823 ORTHO05D000412 8.2e-31 137.9 70 95.7
Gohir.A01G072501 Gossypium hirsutum HOM05D003823 ORTHO05D017994 1.0e-25 120.9 62 82.3
Gohir.A05G203200 Gossypium hirsutum HOM05D003823 ORTHO05D017994 1.0e-25 120.9 62 82.3
Gohir.A10G203700 Gossypium hirsutum HOM05D003823 ORTHO05D017994 1.0e-25 120.9 62 82.3
Gohir.A12G000600 Gossypium hirsutum HOM05D003823 ORTHO05D017994 1.0e-25 120.9 62 82.3
Gohir.D06G205050 Gossypium hirsutum HOM05D003823 ORTHO05D017994 1.0e-25 120.9 62 82.3
Gohir.D08G111400 Gossypium hirsutum HOM05D003823 ORTHO05D017994 1.0e-25 120.9 62 82.3
Gorai.005G095900 Gossypium raimondii HOM05D003823 ORTHO05D218813 6.7e-17 91.7 44 93.2
Duzib248G1489 Durio zibethinus HOM05D003823 ORTHO05D186086 1.2e-13 80.9 55 70.9
Sabra15G0057900 Salix brachista HOM05D003823 ORTHO05D349330 2.0e-13 80.1 46 84.8


User provided reference genes

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