Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g02286 Brassica carinata HOM05D004667 ORTHO05D005522 1.9e-101 372.9 234 100.0
C03p67020 Brassica napus HOM05D004667 ORTHO05D005522 2.7e-100 369.0 234 99.6
BolC3t18977H Brassica oleracea HOM05D004667 ORTHO05D005522 7.8e-100 367.5 234 99.1
A06p27240 Brassica napus HOM05D004667 ORTHO05D005522 2.0e-95 352.8 235 97.0
BraA06t25665Z Brassica rapa HOM05D004667 ORTHO05D005522 7.6e-95 350.9 235 96.6
BcaB02g10693 Brassica carinata HOM05D004667 ORTHO05D005522 7.1e-85 317.8 237 88.2
Sp5g14280 Schrenkiella parvula HOM05D004667 ORTHO05D005522 5.1e-83 311.6 246 84.1
Thhalv10010670m.g Eutrema salsugineum HOM05D004667 ORTHO05D005522 2.6e-79 299.3 238 83.2
Carub.0005s1377 Capsella rubella HOM05D004667 ORTHO05D005522 3.8e-78 295.4 246 79.7
BraA01t02497Z Brassica rapa HOM05D004667 ORTHO05D005522 6.4e-78 294.7 247 80.2
A01p25820 Brassica napus HOM05D004667 ORTHO05D005522 7.1e-77 291.2 247 79.8
CARHR156320 Cardamine hirsuta HOM05D004667 ORTHO05D005522 9.3e-77 290.8 247 80.2
AL5G26930 Arabidopsis lyrata HOM05D004667 ORTHO05D005522 4.6e-76 288.5 247 76.5
AT3G47640 Arabidopsis thaliana HOM05D004667 ORTHO05D005522 5.1e-75 285.0 243 79.8
BolC1t03209H Brassica oleracea HOM05D004667 ORTHO05D005522 8.7e-75 284.3 247 80.2
BcaB05g23064 Brassica carinata HOM05D004667 ORTHO05D005522 1.1e-74 283.9 241 80.9
Aa31LG4G16380 Aethionema arabicum HOM05D004667 ORTHO05D005522 9.6e-66 254.2 241 71.8
THA.LOC104818253 Tarenaya hassleriana HOM05D004667 ORTHO05D005522 3.6e-44 182.6 243 60.5
BcaC09g49811 Brassica carinata HOM05D004667 ORTHO05D005522 1.0e-43 181.0 192 72.4
C01p32730 Brassica napus HOM05D004667 ORTHO05D005522 1.1e-40 171.0 141 87.2
RcHm_v2.0_Chr7g0181001 Rosa chinensis HOM05D004667 ORTHO05D005522 1.6e-36 157.1 246 41.9
FvH4_5g15171 Fragaria vesca HOM05D004667 ORTHO05D005522 1.5e-34 150.6 247 41.3
QL10p016532 Quercus lobata HOM05D004667 ORTHO05D005522 4.4e-34 149.1 217 46.5
Prupe.5G190100 Prunus persica HOM05D004667 ORTHO05D005522 9.7e-34 147.9 247 42.9
MD06G1191600 Malus domestica HOM05D004667 ORTHO05D005522 1.7e-33 147.1 247 41.7
FAN08G0134 Fragaria x ananassa HOM05D004667 ORTHO05D005522 2.2e-33 146.7 248 39.9
Cpa.g.c30141.2 Carica papaya HOM05D004667 ORTHO05D005522 4.8e-33 145.6 244 42.2
Lj4g0024645 Lotus japonicus HOM05D004667 ORTHO05D005522 4.8e-33 145.6 241 39.8
Haze_07341 Corylus avellana HOM05D005938 ORTHO05D007654 6.3e-33 145.2 240 50.0
Ca_21829_v3 Cicer arietinum L. HOM05D004667 ORTHO05D005522 1.1e-32 144.4 239 38.9
Cfa018960 Carpinus fangiana HOM05D004667 ORTHO05D005522 2.4e-32 143.3 231 51.9
Duzib084G1199 Durio zibethinus HOM05D004667 ORTHO05D005522 5.3e-32 142.1 245 42.0
Thecc.03G084200 Theobroma cacao HOM05D004667 ORTHO05D005522 9.1e-32 141.4 245 40.8
Duzib068G0725 Durio zibethinus HOM05D004667 ORTHO05D005522 1.2e-31 141.0 244 46.7
Duzib205G0185 Durio zibethinus HOM05D004667 ORTHO05D005522 3.5e-31 139.4 241 41.1
Gohir.D11G033900 Gossypium hirsutum HOM05D004667 ORTHO05D005522 5.9e-31 138.7 237 41.8
COL.COLO4_24543 Corchorus olitorius HOM05D004667 ORTHO05D005522 1.3e-30 137.5 248 41.1
Gohir.A11G030611 Gossypium hirsutum HOM05D004667 ORTHO05D005522 1.3e-30 137.5 241 41.1
TPR.G34729 Trifolium pratense HOM05D004667 ORTHO05D005522 2.9e-30 136.3 243 41.2
Lalb_Chr07g0177971 Lupinus albus HOM05D004667 ORTHO05D005522 3.8e-30 136.0 240 39.6
Eucgr.B00470 Eucalyptus grandis HOM05D004667 ORTHO05D005522 8.5e-30 134.8 244 38.9
Gorai.007G036700 Gossypium raimondii HOM05D004667 ORTHO05D005522 8.5e-30 134.8 237 40.9
MELO3C017166.2 Cucumis melo HOM05D004667 ORTHO05D005522 1.1e-29 134.4 237 40.1
Manes.14G077100 Manihot esculenta HOM05D004667 ORTHO05D005522 1.1e-29 134.4 235 39.6
TWI15G0884 Tripterygium wilfordii HOM05D004667 ORTHO05D005522 1.5e-29 134.0 240 39.6
Atru.chr9.2269 Acer truncatum HOM05D004667 ORTHO05D005522 2.5e-29 133.3 236 52.5
Ciclev10021941m.g Citrus clementina HOM05D004667 ORTHO05D005522 2.5e-29 133.3 243 42.0
Potri.003G074400 Populus trichocarpa HOM05D004667 ORTHO05D005522 3.2e-29 132.9 207 45.4
PGR083G2477 Punica granatum HOM05D004667 ORTHO05D005522 3.2e-29 132.9 226 41.6
arahy.Tifrunner.gnm1.ann1.0RV7R4 Arachis hypogaea HOM05D004667 ORTHO05D005522 4.2e-29 132.5 239 38.5
Medtr4g108360 Medicago truncatula HOM05D004667 ORTHO05D005522 4.2e-29 132.5 238 39.1
arahy.Tifrunner.gnm1.ann1.U816VA Arachis hypogaea HOM05D004667 ORTHO05D005522 5.5e-29 132.1 239 43.1
MD14G1198000 Malus domestica HOM05D004667 ORTHO05D005522 7.2e-29 131.7 247 39.3
ClCG06G016270 Citrullus lanatus HOM05D004667 ORTHO05D005522 1.2e-28 131.0 240 38.8
Lalb_Chr13g0303301 Lupinus albus HOM05D004667 ORTHO05D005522 1.2e-28 131.0 234 40.2
CsaV3_1G002260 Cucumis sativus L. HOM05D004667 ORTHO05D005522 2.1e-28 130.2 240 38.8
Sabra03G0045100 Salix brachista HOM05D004667 ORTHO05D005522 2.1e-28 130.2 212 44.8
CiPaw.11G042700 Carya illinoinensis HOM05D004667 ORTHO05D005522 2.7e-28 129.8 226 52.2
Phvul.003G191000 Phaseolus vulgaris HOM05D004667 ORTHO05D005522 4.7e-28 129.0 235 39.1
Psat4g051040 Pisum sativum HOM05D004667 ORTHO05D005522 4.7e-28 129.0 220 40.5
TWI60G0935 Tripterygium wilfordii HOM05D004667 ORTHO05D005522 1.0e-27 127.9 235 40.0
VMungo1215G1912 Vigna mungo HOM05D004667 ORTHO05D005522 1.0e-27 127.9 235 40.4
Glyma.05G027600 Glycine max HOM05D004667 ORTHO05D005522 4.0e-27 125.9 241 38.2
Potri.015G142700 Populus trichocarpa HOM05D004667 ORTHO05D005522 4.0e-27 125.9 221 40.7
Dinv19946 Davidia involucrata HOM05D004667 ORTHO05D005522 5.2e-27 125.6 239 38.1
Sed0008118 Sechium edule HOM05D004667 ORTHO05D005522 2.6e-26 123.2 202 40.1
Dinv38692 Davidia involucrata HOM05D004667 ORTHO05D005522 4.4e-26 122.5 221 43.0
Glyma.17G098900 Glycine max HOM05D004667 ORTHO05D005522 4.4e-26 122.5 217 37.8
CANSAT80G1185 Cannabis sativa HOM05D004667 ORTHO05D005522 9.7e-26 121.3 248 37.5
Hma1.2p1_0735F.1_g210470 Hydrangea macrophylla HOM05D004667 ORTHO05D005522 4.8e-25 119.0 214 38.3
A06p19950 Brassica napus HOM05D003537 ORTHO05D004180 1.8e-24 117.1 137 56.2
BraA06t25078Z Brassica rapa HOM05D003537 ORTHO05D004180 1.8e-24 117.1 137 56.2
Sc04g0002550 Simmondsia chinensis HOM05D004667 ORTHO05D005522 3.1e-24 116.3 239 38.9
Solyc03g116340.3 Solanum lycopersicum HOM05D004667 ORTHO05D005522 3.1e-24 116.3 231 50.2
EL10Ac7g16410 Beta vulgaris HOM05D004667 ORTHO05D005522 4.1e-24 115.9 219 46.6
BcaC01g00891 Brassica carinata HOM05D004667 ORTHO05D005522 7.0e-24 115.2 72 83.3
Sopen03g035270 Solanum pennellii HOM05D004667 ORTHO05D005522 1.6e-23 114.0 231 49.8
PGSC0003DMG400000599 Solanum tuberosum HOM05D004667 ORTHO05D005522 1.6e-23 114.0 212 52.8
Actinidia04904 Actinidia chinensis HOM05D004667 ORTHO05D005522 2.0e-23 113.6 248 35.5
Rhsim08G0156600 Rhododendron simsii HOM05D004667 ORTHO05D005522 3.5e-23 112.8 223 37.7
Ah.08g216800 Amaranthus hybridus HOM05D004667 ORTHO05D005522 1.0e-22 111.3 210 40.0
CAN.G407.116 Capsicum annuum HOM05D004667 ORTHO05D005522 1.3e-22 110.9 212 51.9
ECA246G3018 Erigeron canadensis HOM05D004667 ORTHO05D005522 1.3e-22 110.9 207 40.1
Lj5C112T10 Lonicera japonica HOM05D004667 ORTHO05D005522 1.7e-22 110.5 226 35.8
BcaC01g01787 Brassica carinata HOM05D004667 ORTHO05D032196 2.9e-22 109.8 107 63.6
CSS0005857 Camellia sinensis var. sinensis HOM05D004667 ORTHO05D005522 6.5e-22 108.6 214 37.4
AUR62001482 Chenopodium quinoa HOM05D004667 ORTHO05D005522 1.9e-21 107.1 215 39.1
BolC3t18707H Brassica oleracea HOM05D004667 ORTHO05D005522 2.5e-21 106.7 72 77.8
MSTRG.4419 Avicennia marina HOM05D004667 ORTHO05D005522 4.2e-21 105.9 225 34.7
Peaxi162Scf00274g00834 Petunia axillaris HOM05D004667 ORTHO05D005522 1.6e-20 104.0 234 47.9
Phvul.009G188251 Phaseolus vulgaris HOM05D004667 ORTHO05D005522 2.7e-20 103.2 249 34.5
TAR629G0869 Trochodendron aralioides HOM05D000350 ORTHO05D005522 3.6e-20 102.8 252 31.3
HanXRQChr05g0158091 Helianthus annuus HOM05D004667 ORTHO05D005522 4.7e-20 102.4 219 38.8
BraA03t15338Z Brassica rapa HOM05D004667 ORTHO05D005522 6.1e-20 102.1 70 78.6
AUR62009884 Chenopodium quinoa HOM05D004667 ORTHO05D005522 8.0e-20 101.7 213 38.5
Migut.D01831 Erythranthe guttata HOM05D004667 ORTHO05D005522 8.0e-20 101.7 224 35.7
GSVIVG01011386001 Vitis vinifera HOM05D004667 ORTHO05D005522 1.0e-19 101.3 214 33.2
Nitab4.5_0000741g0010 Nicotiana tabacum HOM05D004667 ORTHO05D005522 2.3e-19 100.1 243 32.9
vmacro17553 Vaccinium macrocarpon HOM05D004667 ORTHO05D005522 2.3e-19 100.1 200 35.5
Nitab4.5_0002257g0120 Nicotiana tabacum HOM05D004667 ORTHO05D005522 3.0e-19 99.8 217 49.3
TAR371G0790 Trochodendron aralioides HOM05D004667 ORTHO05D005522 3.0e-19 99.8 244 30.7
Nitab4.5_0000026g0120 Nicotiana tabacum HOM05D004667 ORTHO05D005522 4.0e-19 99.4 240 31.7
Nitab4.5_0014986g0010 Nicotiana tabacum HOM05D004667 ORTHO05D005522 4.0e-19 99.4 231 47.6
Aqoxy3G03350 Aquilegia oxysepala HOM05D004667 ORTHO05D005522 8.8e-19 98.2 236 33.5
VMungo1309G0024 Vigna mungo HOM05D004667 ORTHO05D005522 1.5e-18 97.4 246 32.9
Manes.06G094100 Manihot esculenta HOM05D004667 ORTHO05D005522 2.0e-18 97.1 231 43.3
Sabra15G0152700 Salix brachista HOM05D004667 ORTHO05D005522 2.0e-18 97.1 185 39.5
Sed0021322 Sechium edule HOM05D004667 ORTHO05D005522 2.6e-18 96.7 240 35.0
PSO063G1198 Papaver somniferum HOM05D004667 ORTHO05D005522 4.4e-18 95.9 228 34.6
Actinidia37637 Actinidia chinensis HOM05D004667 ORTHO05D005522 1.3e-17 94.4 128 41.4
Peaxi162Scf00712g00029 Petunia axillaris HOM05D004667 ORTHO05D005522 1.3e-17 94.4 201 34.8
Nn3g17203 Nelumbo nucifera HOM05D004667 ORTHO05D005522 1.7e-17 94.0 227 32.2
Cc04_g16930 Coffea canephora HOM05D004667 ORTHO05D005522 2.8e-17 93.2 232 45.3
Hund02659 Selenicereus undatus HOM05D004667 ORTHO05D005522 2.8e-17 93.2 245 32.7
Lsat_1_v5_gn_5_19381 Lactuca sativa HOM05D000189 ORTHO05D000474 6.3e-17 92.0 93 52.7
HPP92_006020 Vanilla planifolia HOM05D004366 ORTHO05D005058 1.1e-16 91.3 241 33.2
Nn4g23126 Nelumbo nucifera HOM05D004667 ORTHO05D005522 1.4e-16 90.9 222 31.5
PSO832G1839 Papaver somniferum HOM05D004667 ORTHO05D005522 1.4e-16 90.9 228 34.2
GSVIVG01008025001 Vitis vinifera HOM05D004667 ORTHO05D005522 1.8e-16 90.5 166 34.3
DCAR_011136 Daucus carota HOM05D004667 ORTHO05D005522 1.6e-15 87.4 215 30.2
CDE05G2553 Ceratophyllum demersum HOM05D004667 ORTHO05D005522 2.0e-15 87.0 233 30.5
Rhsim08G0068600 Rhododendron simsii HOM05D004667 ORTHO05D005522 2.7e-15 86.7 232 30.6
Actinidia02716 Actinidia chinensis HOM05D004667 ORTHO05D005522 4.5e-15 85.9 220 28.6
vmacro18196 Vaccinium macrocarpon HOM05D004667 ORTHO05D005522 5.9e-15 85.5 218 29.8
MSTRG.3233 Avicennia marina HOM05D004667 ORTHO05D005522 7.7e-15 85.1 227 32.2
CDE05G0260 Ceratophyllum demersum HOM05D004667 ORTHO05D005522 1.0e-14 84.7 233 30.0
BcaB03g16837 Brassica carinata HOM05D004667 ORTHO05D005522 1.3e-14 84.3 54 83.3
C03p71870 Brassica napus HOM05D004667 ORTHO05D032196 3.8e-14 82.8 82 63.4
Hma1.2p1_0449F.1_g155390 Hydrangea macrophylla HOM05D004667 ORTHO05D005522 3.8e-14 82.8 223 30.5
ECA232G3869 Erigeron canadensis HOM05D004667 ORTHO05D005522 5.0e-14 82.4 215 31.2
Os11g0601700 Oryza sativa ssp. japonica HOM05D004667 ORTHO05D005522 6.5e-14 82.0 93 46.2
CDE09G1261 Ceratophyllum demersum HOM05D004667 ORTHO05D005522 8.6e-14 81.6 211 38.9
Actinidia17543 Actinidia chinensis HOM05D004667 ORTHO05D005522 1.1e-13 81.3 225 29.8
MSTRG.23944 Avicennia marina HOM05D004667 ORTHO05D005522 1.9e-13 80.5 221 29.9
DCAR_021526 Daucus carota HOM05D004667 ORTHO05D005522 3.2e-13 79.7 222 41.0
MBI02_g23680_MAGBIO Magnolia biondii HOM05D004667 ORTHO05D005522 3.2e-13 79.7 212 31.6
Oeu022621.1 Olea europaea HOM05D004667 ORTHO05D005522 4.2e-13 79.3 195 32.3
Migut.H00911 Erythranthe guttata HOM05D004667 ORTHO05D005522 5.5e-13 79.0 232 28.4
SalBow1G0094 Salvia bowleyana HOM05D004667 ORTHO05D005522 7.2e-13 78.6 232 30.6
BolC3t19480H Brassica oleracea HOM05D004667 ORTHO05D032196 1.2e-12 77.8 79 62.0
Os07g0628500 Oryza sativa ssp. japonica HOM05D004667 ORTHO05D005522 2.8e-12 76.6 67 58.2
ATR0564G258 Amborella trichopoda HOM05D004667 ORTHO05D005522 3.6e-12 76.3 70 50.0
Cc07_g03280 Coffea canephora HOM05D004667 ORTHO05D005522 4.7e-12 75.9 245 30.2
C08p25720 Brassica napus HOM05D004667 ORTHO05D005522 1.0e-11 74.7 45 84.4
BolC8t50187H Brassica oleracea HOM05D004667 ORTHO05D005522 1.0e-11 74.7 45 84.4
Zm00001eb018460 Zea mays HOM05D004667 ORTHO05D005522 3.0e-11 73.2 95 43.2
Os03g0379300 Oryza sativa ssp. japonica HOM05D004667 ORTHO05D005522 4.0e-11 72.8 86 38.4
Lsat_1_v5_gn_4_178121 Lactuca sativa HOM05D004667 ORTHO05D005522 3.4e-10 69.7 93 38.7
SGA_v2.0_scaffold59G20685 Striga asiatica HOM05D004667 ORTHO05D005522 1.3e-09 67.8 234 25.2
BolC9t55593H Brassica oleracea HOM05D004667 ORTHO05D005522 2.2e-09 67.0 60 66.7
Oeu021379.1 Olea europaea HOM05D004667 ORTHO05D005522 3.7e-09 66.2 199 34.2
BcaC01g02459 Brassica carinata HOM05D004667 ORTHO05D005522 1.4e-08 64.3 39 79.5
Oeu016168.2 Olea europaea HOM05D004667 ORTHO05D005522 1.4e-08 64.3 56 53.6
BolC3t19479H Brassica oleracea HOM05D004667 ORTHO05D005522 4.5e-07 59.3 35 77.1
HanXRQChr09g0265291 Helianthus annuus HOM05D004667 ORTHO05D005522 5.9e-07 58.9 93 40.9
Lsat_1_v5_gn_4_108900 Lactuca sativa HOM05D000650 ORTHO05D000735 1.7e-06 57.4 56 46.4
BcaNung03021 Brassica carinata HOM05D003097 ORTHO05D003437 2.3e-06 57.0 62 41.9
C07p61510 Brassica napus HOM05D003097 ORTHO05D003437 2.3e-06 57.0 62 41.9
BolC7t46575H Brassica oleracea HOM05D003097 ORTHO05D003437 2.3e-06 57.0 62 41.9
BraA03t15471Z Brassica rapa HOM05D003097 ORTHO05D003437 2.3e-06 57.0 62 41.9
Potri.009G129600 Populus trichocarpa HOM05D003097 ORTHO05D003437 2.3e-06 57.0 83 33.7
Zm00001eb328250 Zea mays HOM05D004667 ORTHO05D005522 3.8e-06 56.2 52 50.0
BraA01t00253Z Brassica rapa HOM05D003097 ORTHO05D003437 8.6e-06 55.1 64 35.9


User provided reference genes

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