Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g02114 Brassica carinata HOM05D005717 ORTHO05D007221 0.0e+00 1677.1 939 100.0
BolC3t19078H Brassica oleracea HOM05D005717 ORTHO05D007221 0.0e+00 1674.4 939 99.9
C03p68460 Brassica napus HOM05D005717 ORTHO05D007221 0.0e+00 1664.8 940 99.6
A06p22690 Brassica napus HOM05D005717 ORTHO05D007221 0.0e+00 1607.0 939 96.2
BcaB01g01238 Brassica carinata HOM05D005717 ORTHO05D007221 0.0e+00 1590.5 943 94.7
BraA06t25353Z Brassica rapa HOM05D005717 ORTHO05D007221 0.0e+00 1571.6 939 94.9
Sp5g17930 Schrenkiella parvula HOM05D005717 ORTHO05D007221 0.0e+00 1468.8 946 87.5
SpUn0079_0020 Schrenkiella parvula HOM05D005717 ORTHO05D007221 0.0e+00 1468.8 946 87.5
Thhalv10016196m.g Eutrema salsugineum HOM05D005717 ORTHO05D007221 0.0e+00 1441.8 946 85.8
Carub.0005s0880 Capsella rubella HOM05D005717 ORTHO05D007221 0.0e+00 1386.3 955 77.7
AL5G20890 Arabidopsis lyrata HOM05D005717 ORTHO05D007221 0.0e+00 1368.6 954 81.3
CARHR153710 Cardamine hirsuta HOM05D005717 ORTHO05D007221 0.0e+00 1338.9 955 80.8
AT3G42660 Arabidopsis thaliana HOM05D005717 ORTHO05D007221 0.0e+00 1305.4 956 78.6
Aa31LG4G13310 Aethionema arabicum HOM05D005717 ORTHO05D007221 0.0e+00 1166.0 959 71.4
THA.LOC104804979 Tarenaya hassleriana HOM05D005717 ORTHO05D007221 2.1e-297 1025.8 950 66.0
Atru.chr9.636 Acer truncatum HOM05D005717 ORTHO05D007221 3.9e-275 951.8 970 55.3
Thecc.03G110500 Theobroma cacao HOM05D005717 ORTHO05D007221 6.2e-273 944.5 950 61.6
Potri.012G065200 Populus trichocarpa HOM05D005717 ORTHO05D007221 5.8e-271 937.9 953 60.9
QL10p021360 Quercus lobata HOM05D005717 ORTHO05D007221 3.8e-270 935.3 958 55.3
Duzib205G0984 Durio zibethinus HOM05D005717 ORTHO05D007221 1.4e-269 933.3 953 60.7
Cfa019855 Carpinus fangiana HOM05D005717 ORTHO05D007221 7.1e-269 931.0 969 54.4
arahy.Tifrunner.gnm1.ann1.V6HMAT Arachis hypogaea HOM05D005717 ORTHO05D007221 3.0e-267 925.6 958 54.1
Duzib068G1379 Durio zibethinus HOM05D005717 ORTHO05D007221 1.1e-266 923.7 949 61.0
CiPaw.16G080600 Carya illinoinensis HOM05D005717 ORTHO05D007221 5.6e-266 921.4 909 60.7
PGR044G0409 Punica granatum HOM05D005717 ORTHO05D007221 2.1e-265 919.5 977 58.9
CANSAT80G2305 Cannabis sativa HOM05D005717 ORTHO05D007221 6.2e-265 917.9 956 59.4
Ca_26377_v3 Cicer arietinum L. HOM05D005717 ORTHO05D007221 5.3e-264 914.8 963 59.3
Ciclev10018495m.g Citrus clementina HOM05D005717 ORTHO05D007221 9.0e-264 914.1 956 54.7
arahy.Tifrunner.gnm1.ann1.06HQ5Q Arachis hypogaea HOM05D005717 ORTHO05D007221 1.2e-263 913.7 962 53.8
Eucgr.K02631 Eucalyptus grandis HOM05D005717 ORTHO05D007221 1.2e-263 913.7 953 59.4
GSVIVG01008170001 Vitis vinifera HOM05D005717 ORTHO05D007221 2.6e-263 912.5 949 52.6
Medtr2g059200 Medicago truncatula HOM05D005717 ORTHO05D007221 3.8e-262 908.7 961 58.8
Nn4g23582 Nelumbo nucifera HOM05D005717 ORTHO05D007221 3.2e-261 905.6 956 59.6
Sabra12G0046300 Salix brachista HOM05D005717 ORTHO05D007221 4.2e-261 905.2 955 55.2
Haze_18548 Corylus avellana HOM05D005717 ORTHO05D007221 7.1e-261 904.4 1045 50.3
Psat1g029000 Pisum sativum HOM05D005717 ORTHO05D007221 2.1e-260 902.9 959 58.0
ClCG06G015370 Citrullus lanatus HOM05D005717 ORTHO05D007221 2.7e-260 902.5 970 53.2
MD06G1206600 Malus domestica HOM05D005717 ORTHO05D007221 3.5e-260 902.1 969 59.1
Manes.06G080000 Manihot esculenta HOM05D005717 ORTHO05D007221 2.3e-259 899.4 947 60.3
Rhsim12G0147200 Rhododendron simsii HOM05D005717 ORTHO05D007221 3.9e-259 898.7 955 53.4
Gohir.A03G072200 Gossypium hirsutum HOM05D005717 ORTHO05D007221 1.1e-258 897.1 949 58.3
TPR.G15323 Trifolium pratense HOM05D005717 ORTHO05D007221 1.1e-258 897.1 958 58.0
MELO3C017258.2 Cucumis melo HOM05D005717 ORTHO05D007221 1.5e-258 896.7 973 53.1
MD14G1217300 Malus domestica HOM05D005717 ORTHO05D007221 7.4e-258 894.4 973 55.3
VMungo1309G2787 Vigna mungo HOM05D005717 ORTHO05D007221 2.1e-257 892.9 967 58.2
CSS0018836 Camellia sinensis var. sinensis HOM05D005717 ORTHO05D007221 4.8e-257 891.7 952 55.4
Lj5A138T57 Lonicera japonica HOM05D005717 ORTHO05D007221 6.2e-257 891.3 955 55.1
MSTRG.9576 Avicennia marina HOM05D005717 ORTHO05D007221 4.0e-256 888.6 952 54.3
Lj1g0015597 Lotus japonicus HOM05D005717 ORTHO05D007221 5.3e-256 888.3 957 51.8
Gorai.003G103900 Gossypium raimondii HOM05D005717 ORTHO05D007221 9.0e-256 887.5 903 60.4
CsaV3_1G003250 Cucumis sativus L. HOM05D005717 ORTHO05D007221 2.0e-255 886.3 972 52.8
Migut.D01493 Erythranthe guttata HOM05D005717 ORTHO05D007221 3.4e-255 885.6 887 56.1
TWI60G0681 Tripterygium wilfordii HOM05D005717 ORTHO05D007221 2.2e-254 882.9 921 54.0
RcHm_v2.0_Chr7g0183891 Rosa chinensis HOM05D005717 ORTHO05D007221 1.1e-253 880.6 949 57.3
Gohir.D03G099000 Gossypium hirsutum HOM05D005717 ORTHO05D007221 2.1e-252 876.3 948 58.5
MBI15_g42003_MAGBIO Magnolia biondii HOM05D005717 ORTHO05D007221 2.7e-252 875.9 890 58.8
FvH4_5g13280 Fragaria vesca HOM05D005717 ORTHO05D007221 1.5e-250 870.2 975 56.4
Glyma.06G206800 Glycine max HOM05D005717 ORTHO05D007221 1.5e-250 870.2 958 57.9
Actinidia24269 Actinidia chinensis HOM05D005717 ORTHO05D007221 4.3e-250 868.6 960 53.2
Sopen03g033760 Solanum pennellii HOM05D005717 ORTHO05D007221 4.3e-250 868.6 825 60.6
Sc04g0003990 Simmondsia chinensis HOM05D005717 ORTHO05D007221 5.6e-250 868.2 956 52.0
TAR629G3288 Trochodendron aralioides HOM05D005717 ORTHO05D007221 5.6e-250 868.2 950 58.5
FAN08G0926 Fragaria x ananassa HOM05D005717 ORTHO05D007221 7.4e-250 867.8 976 56.2
Glyma.04G158400 Glycine max HOM05D005717 ORTHO05D007221 7.4e-250 867.8 960 57.4
Sed0011544 Sechium edule HOM05D005717 ORTHO05D007221 2.1e-249 866.3 952 49.9
FAN18G3426 Fragaria x ananassa HOM05D005717 ORTHO05D007221 2.8e-249 865.9 976 56.2
FAN13G2659 Fragaria x ananassa HOM05D005717 ORTHO05D007221 1.4e-248 863.6 954 56.7
TWI81G0191 Tripterygium wilfordii HOM05D005717 ORTHO05D007221 3.1e-248 862.4 946 52.1
Lalb_Chr08g0235411 Lupinus albus HOM05D005717 ORTHO05D007221 4.0e-248 862.1 952 52.1
Peaxi162Scf00017g03258 Petunia axillaris HOM05D005717 ORTHO05D007221 5.3e-248 861.7 821 56.9
Nitab4.5_0002805g0040 Nicotiana tabacum HOM05D005717 ORTHO05D007221 2.0e-247 859.8 913 53.7
Cc04_g08130 Coffea canephora HOM05D005717 ORTHO05D007221 4.5e-247 858.6 927 53.0
Lsat_1_v5_gn_4_112460 Lactuca sativa HOM05D005717 ORTHO05D007221 4.5e-247 858.6 947 50.7
vmacro16471 Vaccinium macrocarpon HOM05D005717 ORTHO05D007221 1.3e-246 857.1 979 51.9
Nitab4.5_0000646g0340 Nicotiana tabacum HOM05D005717 ORTHO05D007221 3.8e-246 855.5 830 56.6
PGSC0003DMG400024615 Solanum tuberosum HOM05D005717 ORTHO05D007221 4.9e-246 855.1 825 62.9
ECA232G0673 Erigeron canadensis HOM05D005717 ORTHO05D007221 3.2e-245 852.4 886 51.9
Aqoxy3G00578 Aquilegia oxysepala HOM05D005717 ORTHO05D004235 9.3e-245 850.9 950 52.2
Oeu031929.1 Olea europaea HOM05D005717 ORTHO05D007221 6.7e-243 844.7 948 53.1
SalBow1G6140 Salvia bowleyana HOM05D005717 ORTHO05D007221 6.7e-243 844.7 998 51.5
CDE01G0371 Ceratophyllum demersum HOM05D005717 ORTHO05D007221 2.8e-241 839.3 959 49.9
Phvul.009G204400 Phaseolus vulgaris HOM05D005717 ORTHO05D007221 2.8e-241 839.3 963 56.3
HanXRQChr16g0501941 Helianthus annuus HOM05D005717 ORTHO05D007221 1.4e-240 837.0 952 51.9
Hund09972 Selenicereus undatus HOM05D005717 ORTHO05D007221 7.2e-237 824.7 832 54.1
Dinv36820 Davidia involucrata HOM05D005717 ORTHO05D007221 9.4e-237 824.3 955 51.5
SGA_v2.0_scaffold42G16051 Striga asiatica HOM05D005717 ORTHO05D007221 9.4e-237 824.3 950 51.7
EL10Ac5g11198 Beta vulgaris HOM05D005717 ORTHO05D007221 1.6e-236 823.5 838 53.8
Prupe.5G211000 Prunus persica HOM05D005717 ORTHO05D007221 2.7e-236 822.8 976 53.5
DCAR_014013 Daucus carota HOM05D005717 ORTHO05D007221 5.1e-235 818.5 972 54.9
AUR62039684 Chenopodium quinoa HOM05D005717 ORTHO05D007221 9.7e-234 814.3 991 48.7
AUR62032150 Chenopodium quinoa HOM05D005717 ORTHO05D007221 2.2e-233 813.1 985 49.0
Ah.11g047340 Amaranthus hybridus HOM05D005717 ORTHO05D007221 5.5e-229 798.5 963 49.5
Cpa.g.sc3.215 Carica papaya HOM05D005717 ORTHO05D007221 2.6e-223 779.6 952 46.7
Dinv38628 Davidia involucrata HOM05D005717 ORTHO05D007221 2.2e-222 776.5 941 49.4
unitig_578.g15938 Utricularia gibba HOM05D005717 ORTHO05D007221 9.4e-221 771.2 931 48.7
PSO017G2079 Papaver somniferum HOM05D005717 ORTHO05D007221 2.6e-215 753.1 970 51.4
PSO478G4609 Papaver somniferum HOM05D005717 ORTHO05D007221 5.9e-215 751.9 972 47.0
Os09g0241100 Oryza sativa ssp. japonica HOM05D005717 ORTHO05D007221 3.2e-213 746.1 938 48.0
Solyc03g114690.4 Solanum lycopersicum HOM05D005717 ORTHO05D007221 2.8e-209 733.0 778 54.2
SEGI_19386 Sequoiadendron giganteum HOM05D005717 ORTHO05D007221 2.2e-193 680.2 955 46.7
Zm00001eb308160 Zea mays HOM05D005717 ORTHO05D007221 5.9e-191 672.2 773 49.5
ATR0691G143 Amborella trichopoda HOM05D005717 ORTHO05D007221 3.4e-186 656.4 788 47.7
Mapoly0112s0022 Marchantia polymorpha HOM05D005717 ORTHO05D007221 4.9e-161 572.8 959 45.2
AagrBONN_evm.TU.Sc2ySwM_344.3979 Anthoceros agrestis HOM05D005717 ORTHO05D007221 1.1e-157 561.6 886 41.2
SHI19002 Sapria himalayana HOM05D005717 ORTHO05D007221 5.6e-141 506.1 604 54.0
SMO201G0059 Selaginella moellendorffii HOM05D005717 ORTHO05D007221 4.8e-140 503.1 823 44.8
Pp3c26_14490 Physcomitrium patens HOM05D005717 ORTHO05D007221 3.0e-118 430.6 450 50.9
CBR_g19153 Chara braunii HOM05D005717 ORTHO05D007221 4.7e-111 406.8 814 36.0
HPP92_020490 Vanilla planifolia HOM05D005717 ORTHO05D007221 8.5e-105 386.0 508 45.7
HPP92_020489 Vanilla planifolia HOM05D005717 ORTHO05D007221 2.5e-104 384.4 457 47.5
MCO04G151 Micromonas commoda HOM05D005717 ORTHO05D007221 4.4e-77 293.9 831 31.2
PRCOL_00001230 Prasinoderma coloniale HOM05D005717 ORTHO05D007221 1.4e-75 288.9 778 29.4
Cre16.g652950 Chlamydomonas reinhardtii HOM05D005717 ORTHO05D007221 2.4e-59 235.0 895 24.1
SHI19003 Sapria himalayana HOM05D005717 ORTHO05D007221 1.6e-58 232.3 365 40.8
Peaxi162Scf00417g01311 Petunia axillaris HOM05D005717 ORTHO05D007221 2.8e-47 194.9 499 32.5
Lsat_1_v5_gn_5_133280 Lactuca sativa HOM05D005717 ORTHO05D007221 1.4e-43 182.6 218 45.4
Lsat_1_v5_gn_4_132261 Lactuca sativa HOM05D005717 ORTHO05D007221 1.6e-42 179.1 219 43.8
Peaxi162Scf00417g01333 Petunia axillaris HOM05D005717 ORTHO05D007221 3.0e-41 174.9 172 53.5
BolC3t19074H Brassica oleracea HOM05D005717 ORTHO05D007221 2.4e-30 138.7 90 78.9
C03p68400 Brassica napus HOM05D005717 ORTHO05D007221 1.2e-29 136.3 90 77.8
BraA06t25356Z Brassica rapa HOM05D005717 ORTHO05D007221 1.6e-26 125.9 131 60.3
A06p22750 Brassica napus HOM05D005717 ORTHO05D007221 2.7e-26 125.2 98 70.4
Medtr8g432590 Medicago truncatula HOM05D005717 ORTHO05D007221 2.9e-20 105.1 82 65.9
Lsat_1_v5_gn_4_12100 Lactuca sativa HOM05D005717 ORTHO05D007221 3.5e-18 98.2 115 47.8
Actinidia04785 Actinidia chinensis HOM05D005717 ORTHO05D007221 4.8e-15 87.8 67 59.7
Medtr2g090685 Medicago truncatula HOM05D005717 ORTHO05D007221 4.5e-13 81.3 68 63.2
MBI16_g18971_MAGBIO Magnolia biondii HOM05D005717 ORTHO05D007221 3.6e-10 71.6 151 31.8
Actinidia04786 Actinidia chinensis HOM05D005717 ORTHO05D007221 5.1e-09 67.8 190 31.6
AUR62037337 Chenopodium quinoa HOM05D006312 ORTHO05D007843 3.1e-06 58.5 35 80.0


User provided reference genes

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