Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g02001 Brassica carinata HOM05D009142 ORTHO05D017515 2.5e-65 251.9 122 100.0
C03p69660 Brassica napus HOM05D009142 ORTHO05D017515 9.5e-65 250.0 121 100.0
BolC3t19224H Brassica oleracea HOM05D009142 ORTHO05D017515 9.5e-65 250.0 121 100.0
BcaC01g01996 Brassica carinata HOM05D009142 ORTHO05D017515 4.9e-61 237.7 121 95.0
C03p69730 Brassica napus HOM05D009142 ORTHO05D017515 9.2e-60 233.4 121 93.4
BolC2t08459H Brassica oleracea HOM05D009142 ORTHO05D106632 9.2e-60 233.4 121 92.6
BolC3t19232H Brassica oleracea HOM05D009142 ORTHO05D106603 3.5e-59 231.5 126 91.3
C02p23170 Brassica napus HOM05D009142 ORTHO05D017515 1.3e-58 229.6 121 93.4
C01p32780 Brassica napus HOM05D009142 ORTHO05D017515 2.3e-58 228.8 121 93.4
BolC9t55760H Brassica oleracea HOM05D009142 ORTHO05D017515 5.0e-58 227.6 126 89.7
BcaC04g21679 Brassica carinata HOM05D009142 ORTHO05D090460 1.9e-57 225.7 124 89.5
C09p28950 Brassica napus HOM05D009142 ORTHO05D097323 4.4e-54 214.5 121 88.4
BcaC07g37235 Brassica carinata HOM05D009142 ORTHO05D090351 1.9e-49 199.1 106 91.5
C08p06560 Brassica napus HOM05D009142 ORTHO05D017515 2.5e-49 198.7 106 92.5
BcaC09g49802 Brassica carinata HOM05D009142 ORTHO05D091049 3.4e-46 188.3 121 80.2
C04p24200 Brassica napus HOM05D009142 ORTHO05D097994 1.0e-42 176.8 91 93.4
C01p28360 Brassica napus HOM05D009142 ORTHO05D040187 3.1e-39 165.2 146 65.8
BolC1t02765H Brassica oleracea HOM05D009142 ORTHO05D040187 2.0e-38 162.5 117 75.2
BcaC09g50894 Brassica carinata HOM05D009142 ORTHO05D095404 1.9e-25 119.4 91 73.6
BolC1t01877H Brassica oleracea HOM05D009142 ORTHO05D105623 1.1e-20 103.6 121 51.2
C03p63110 Brassica napus HOM05D009142 ORTHO05D101793 9.6e-17 90.5 80 68.8
BcaC06g33515 Brassica carinata HOM05D009142 ORTHO05D027516 8.4e-13 77.4 76 63.2
C07p48260 Brassica napus HOM05D009142 ORTHO05D027516 8.4e-13 77.4 76 63.2
BcaC06g33437 Brassica carinata HOM05D003261 ORTHO05D004230 5.4e-12 74.7 48 81.2
C07p47500 Brassica napus HOM05D003261 ORTHO05D004230 5.4e-12 74.7 48 81.2
BolC7t45277H Brassica oleracea HOM05D003261 ORTHO05D004230 5.4e-12 74.7 48 81.2
BcaC06g32973 Brassica carinata HOM05D003261 ORTHO05D004230 1.6e-11 73.2 48 79.2
BraA03t14046Z Brassica rapa HOM05D003261 ORTHO05D004230 2.1e-11 72.8 48 79.2
BcaC01g02590 Brassica carinata HOM05D012155 ORTHO05D021780 2.7e-11 72.4 41 87.8
A03p49450 Brassica napus HOM05D003261 ORTHO05D004230 4.6e-11 71.6 48 79.2
C01p19490 Brassica napus HOM05D009142 ORTHO05D041610 1.8e-10 69.7 35 94.3
Carub.0007s2576 Capsella rubella HOM05D003261 ORTHO05D004230 1.8e-10 69.7 48 75.0
Thhalv10025068m.g Eutrema salsugineum HOM05D003261 ORTHO05D004230 1.8e-10 69.7 48 75.0
Sp7g14310 Schrenkiella parvula HOM05D002510 ORTHO05D007210 3.0e-10 68.9 48 77.1
SpUn1161_0010 Schrenkiella parvula HOM05D003261 ORTHO05D027516 3.0e-10 68.9 48 77.1
AL7G39370 Arabidopsis lyrata HOM05D003261 ORTHO05D004230 6.7e-10 67.8 48 75.0
CARHR290440 Cardamine hirsuta HOM05D003261 ORTHO05D004230 8.7e-10 67.4 48 75.0
BcaC07g37407 Brassica carinata HOM05D009142 ORTHO05D032415 7.4e-09 64.3 37 89.2
C08p08840 Brassica napus HOM05D009142 ORTHO05D032415 7.4e-09 64.3 37 89.2
BolC8t47730H Brassica oleracea HOM05D009142 ORTHO05D032415 7.4e-09 64.3 37 89.2
AT4G15900 Arabidopsis thaliana HOM05D003261 ORTHO05D004230 3.7e-08 62.0 49 71.4
Aa31LG10G6240 Aethionema arabicum HOM05D003261 ORTHO05D004230 8.1e-08 60.8 48 68.8
BcaNung00239 Brassica carinata HOM05D003261 ORTHO05D004230 6.9e-07 57.8 48 68.8


User provided reference genes

Program Settings