Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g01772 Brassica carinata HOM05D005070 ORTHO05D005987 4.3e-104 381.3 191 100.0
C03p72060 Brassica napus HOM05D005070 ORTHO05D005987 7.6e-45 184.5 94 100.0
BolC3t19504H Brassica oleracea HOM05D005070 ORTHO05D005987 2.2e-44 183.0 94 98.9
BcaB01g00872 Brassica carinata HOM05D005070 ORTHO05D005987 4.2e-43 178.7 94 96.8
A06p19790 Brassica napus HOM05D005070 ORTHO05D005987 4.2e-43 178.7 94 96.8
BraA06t25059Z Brassica rapa HOM05D005070 ORTHO05D005987 4.2e-43 178.7 94 96.8
Aa31LG4G16490 Aethionema arabicum HOM05D007129 ORTHO05D008680 1.3e-39 167.2 257 44.0
BcaB02g10688 Brassica carinata HOM05D005070 ORTHO05D005987 8.5e-36 154.5 92 83.7
Carub.0005s1395 Capsella rubella HOM05D005070 ORTHO05D005987 1.2e-34 150.6 93 82.8
Thhalv10010853m.g Eutrema salsugineum HOM05D005070 ORTHO05D005987 3.6e-34 149.1 93 83.9
CARHR156530 Cardamine hirsuta HOM05D005070 ORTHO05D005987 1.4e-33 147.1 93 81.7
BcaC01g02293 Brassica carinata HOM05D005070 ORTHO05D005987 1.8e-33 146.7 92 80.4
C03p66960 Brassica napus HOM05D005070 ORTHO05D005987 1.8e-33 146.7 92 80.4
BolC3t18969H Brassica oleracea HOM05D005070 ORTHO05D005987 1.8e-33 146.7 92 80.4
AL5G27130 Arabidopsis lyrata HOM05D005070 ORTHO05D005987 6.3e-31 138.3 93 79.6
AT3G47833 Arabidopsis thaliana HOM05D005070 ORTHO05D005987 8.2e-31 137.9 93 81.7
AT5G62575 Arabidopsis thaliana HOM05D005070 ORTHO05D005987 5.3e-30 135.2 93 73.1
Thhalv10005150m.g Eutrema salsugineum HOM05D005070 ORTHO05D005987 2.9e-28 129.4 102 66.7
Carub.0008s2325 Capsella rubella HOM05D005070 ORTHO05D005987 4.2e-27 125.6 93 66.7
CARHR276360 Cardamine hirsuta HOM05D005070 ORTHO05D005987 5.5e-27 125.2 92 66.3
THA.LOC104819433 Tarenaya hassleriana HOM05D005070 ORTHO05D005987 1.6e-26 123.6 90 71.1
THA.LOC104821444 Tarenaya hassleriana HOM05D005070 ORTHO05D005987 1.6e-26 123.6 93 68.8
Hma1.2p1_1643F.1_g295270 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 2.7e-26 122.9 93 65.6
Hma1.2p1_2351F.1_g320498 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 2.7e-26 122.9 93 65.6
COL.COLO4_04329 Corchorus olitorius HOM05D005070 ORTHO05D005987 4.7e-26 122.1 93 64.5
TWI34G0241 Tripterygium wilfordii HOM05D005070 ORTHO05D005987 6.1e-26 121.7 95 64.2
Duzib068G0746 Durio zibethinus HOM05D005070 ORTHO05D005987 7.9e-26 121.3 93 65.6
Sp2g25760 Schrenkiella parvula HOM05D005070 ORTHO05D005987 1.4e-25 120.6 94 68.1
Sc04g0002050 Simmondsia chinensis HOM05D005070 ORTHO05D005987 1.4e-25 120.6 93 64.5
Prupe.5G178000 Prunus persica HOM05D005070 ORTHO05D005987 2.3e-25 119.8 93 64.5
Eucgr.B00344 Eucalyptus grandis HOM05D005070 ORTHO05D005987 3.9e-25 119.0 94 62.8
MD14G1185300 Malus domestica HOM05D005070 ORTHO05D005987 5.2e-25 118.6 93 62.4
Potri.015G072100 Populus trichocarpa HOM05D005070 ORTHO05D005987 5.2e-25 118.6 95 69.5
Dinv20690 Davidia involucrata HOM05D005070 ORTHO05D005987 8.8e-25 117.9 93 65.6
Hund09411 Selenicereus undatus HOM05D005070 ORTHO05D005987 8.8e-25 117.9 119 52.9
QL10p013399 Quercus lobata HOM05D005070 ORTHO05D005987 2.0e-24 116.7 93 63.4
MSTRG.4382 Avicennia marina HOM05D005070 ORTHO05D005987 2.6e-24 116.3 93 66.7
Thecc.03G005900 Theobroma cacao HOM05D005070 ORTHO05D005987 2.6e-24 116.3 93 62.4
CSS0001011 Camellia sinensis var. sinensis HOM05D005070 ORTHO05D005987 3.3e-24 115.9 93 62.4
CsaV3_1G001750 Cucumis sativus L. HOM05D005070 ORTHO05D005987 3.3e-24 115.9 93 63.4
TWI32G1183 Tripterygium wilfordii HOM05D005070 ORTHO05D005987 4.4e-24 115.5 93 62.4
Hma1.2p1_0002F.1_g002700 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 7.4e-24 114.8 93 62.4
Phvul.009G181300 Phaseolus vulgaris HOM05D005070 ORTHO05D005987 7.4e-24 114.8 92 64.1
Oeu022174.1 Olea europaea HOM05D005070 ORTHO05D005987 9.7e-24 114.4 93 65.6
Actinidia33046 Actinidia chinensis HOM05D005070 ORTHO05D005987 1.3e-23 114.0 96 60.4
Ciclev10024649m.g Citrus clementina HOM05D005070 ORTHO05D005987 2.2e-23 113.2 93 64.5
Sed0009180 Sechium edule HOM05D005070 ORTHO05D005987 2.2e-23 113.2 94 64.9
Atru.chr9.2417 Acer truncatum HOM05D005070 ORTHO05D005987 3.7e-23 112.5 93 65.6
Aqoxy3G03084 Aquilegia oxysepala HOM05D005070 ORTHO05D005987 3.7e-23 112.5 93 62.4
MELO3C017115.2 Cucumis melo HOM05D005070 ORTHO05D005987 3.7e-23 112.5 93 61.3
Manes.06G101800 Manihot esculenta HOM05D005070 ORTHO05D005987 3.7e-23 112.5 93 63.4
GSVIVG01007813001 Vitis vinifera HOM05D005070 ORTHO05D005987 3.7e-23 112.5 93 61.3
Actinidia19084 Actinidia chinensis HOM05D005070 ORTHO05D005987 4.8e-23 112.1 93 60.2
Lj1g0020478 Lotus japonicus HOM05D005070 ORTHO05D005987 4.8e-23 112.1 91 62.6
Lalb_Chr11g0071141 Lupinus albus HOM05D005070 ORTHO05D005987 4.8e-23 112.1 92 59.8
MD06G1180200 Malus domestica HOM05D005070 ORTHO05D005987 4.8e-23 112.1 93 61.3
Duzib205G1171 Durio zibethinus HOM05D005070 ORTHO05D005987 8.2e-23 111.3 92 60.9
Gorai.008G297700 Gossypium raimondii HOM05D005070 ORTHO05D005987 1.1e-22 110.9 93 60.2
MSTRG.9667 Avicennia marina HOM05D005070 ORTHO05D005987 1.8e-22 110.2 93 63.4
Ca_16205_v3 Cicer arietinum L. HOM05D000612 ORTHO05D005987 1.8e-22 110.2 93 55.9
Cc04_g13080 Coffea canephora HOM05D005070 ORTHO05D005987 1.8e-22 110.2 93 62.4
Sed0013294 Sechium edule HOM05D005070 ORTHO05D005987 1.8e-22 110.2 93 62.4
Dinv09171 Davidia involucrata HOM05D005070 ORTHO05D005987 2.4e-22 109.8 99 57.6
PGR083G2074 Punica granatum HOM05D005070 ORTHO05D005987 2.4e-22 109.8 94 64.9
Nitab4.5_0003132g0040 Nicotiana tabacum HOM05D005070 ORTHO05D005987 3.1e-22 109.4 108 57.4
Potri.012G077101 Populus trichocarpa HOM05D005070 ORTHO05D005987 3.1e-22 109.4 94 61.7
Medtr3g078310 Medicago truncatula HOM05D005070 ORTHO05D005987 4.1e-22 109.0 94 60.6
Glyma.06G185100 Glycine max HOM05D005070 ORTHO05D005987 5.3e-22 108.6 93 60.2
RcHm_v2.0_Chr7g0179591 Rosa chinensis HOM05D005070 ORTHO05D005987 5.3e-22 108.6 93 60.2
EL10Ac5g10819 Beta vulgaris HOM05D005070 ORTHO05D005987 7.0e-22 108.2 93 60.2
CANSAT35G0192 Cannabis sativa HOM05D005070 ORTHO05D005987 7.0e-22 108.2 93 59.1
CANSAT80G1974 Cannabis sativa HOM05D005070 ORTHO05D005987 7.0e-22 108.2 93 59.1
Psat5g113840 Pisum sativum HOM05D005070 ORTHO05D005987 7.0e-22 108.2 93 57.0
Solyc06g073360.3 Solanum lycopersicum HOM05D005070 ORTHO05D005987 7.0e-22 108.2 93 62.4
Sopen06g029740 Solanum pennellii HOM05D005070 ORTHO05D005987 7.0e-22 108.2 93 62.4
Gohir.D12G277200 Gossypium hirsutum HOM05D005070 ORTHO05D005987 1.2e-21 107.5 93 60.2
Lalb_Chr23g0273091 Lupinus albus HOM05D005070 ORTHO05D005987 1.2e-21 107.5 93 59.1
C08p19280 Brassica napus HOM05D000130 ORTHO05D000257 1.6e-21 107.1 65 81.5
CiPaw.12G023900 Carya illinoinensis HOM05D005070 ORTHO05D005987 1.6e-21 107.1 93 58.1
Manes.06G101600 Manihot esculenta HOM05D005070 ORTHO05D005987 1.6e-21 107.1 93 61.3
Sabra12G0055200 Salix brachista HOM05D005070 ORTHO05D005987 1.6e-21 107.1 94 61.7
Nitab4.5_0005570g0060 Nicotiana tabacum HOM05D005070 ORTHO05D005987 2.0e-21 106.7 108 56.5
Gohir.A12G276360 Gossypium hirsutum HOM05D005070 ORTHO05D005987 3.5e-21 105.9 93 58.1
Migut.D01788 Erythranthe guttata HOM05D005070 ORTHO05D005987 4.5e-21 105.5 93 63.4
Phvul.009G149950 Phaseolus vulgaris HOM05D005070 ORTHO05D005987 4.5e-21 105.5 93 60.2
Glyma.04G179700 Glycine max HOM05D005070 ORTHO05D005987 7.7e-21 104.8 93 58.1
Cfa019078 Carpinus fangiana HOM05D005070 ORTHO05D005987 1.0e-20 104.4 93 57.0
arahy.Tifrunner.gnm1.ann1.FI7QKA Arachis hypogaea HOM05D005070 ORTHO05D005987 1.3e-20 104.0 93 57.0
CSS0038581 Camellia sinensis var. sinensis HOM05D005070 ORTHO05D005987 1.7e-20 103.6 97 55.7
TAR371G1219 Trochodendron aralioides HOM05D005070 ORTHO05D005987 1.7e-20 103.6 93 59.1
Nn3g16981 Nelumbo nucifera HOM05D005070 ORTHO05D005987 2.2e-20 103.2 93 57.0
arahy.Tifrunner.gnm1.ann1.LKK6LB Arachis hypogaea HOM05D005070 ORTHO05D005987 5.0e-20 102.1 94 54.3
BolC8t49547H Brassica oleracea HOM05D000130 ORTHO05D000001 6.5e-20 101.7 62 79.0
TAR629G1223 Trochodendron aralioides HOM05D005070 ORTHO05D005987 1.9e-19 100.1 93 57.0
TPR.G15088 Trifolium pratense HOM05D005070 ORTHO05D005987 2.5e-19 99.8 93 52.7
FvH4_5g16500 Fragaria vesca HOM05D005070 ORTHO05D005987 4.2e-19 99.0 93 55.9
FAN04G3047 Fragaria x ananassa HOM05D005070 ORTHO05D005987 4.2e-19 99.0 93 55.9
FAN13G2199 Fragaria x ananassa HOM05D005070 ORTHO05D005987 4.2e-19 99.0 93 55.9
unitig_0.g791 Utricularia gibba HOM05D005070 ORTHO05D005987 5.5e-19 98.6 93 57.0
FAN18G1077 Fragaria x ananassa HOM05D005070 ORTHO05D005987 9.4e-19 97.8 93 54.8
Hma1.2p1_1643F.1_g295260 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 9.4e-19 97.8 78 65.4
Hma1.2p1_2351F.1_g320497 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 9.4e-19 97.8 78 65.4
Peaxi162Scf00375g00418 Petunia axillaris HOM05D005070 ORTHO05D005987 1.2e-18 97.4 92 54.3
Oeu016348.1 Olea europaea HOM05D005070 ORTHO05D005987 1.6e-18 97.1 93 57.0
TPR.G17706 Trifolium pratense HOM05D005070 ORTHO05D005987 2.1e-18 96.7 92 52.2
SGA_v2.0_scaffold7G04113 Striga asiatica HOM05D007129 ORTHO05D008680 2.7e-18 96.3 337 27.9
FAN08G0574 Fragaria x ananassa HOM05D005070 ORTHO05D005987 8.0e-18 94.7 93 54.8
DCAR_031298 Daucus carota HOM05D005070 ORTHO05D005987 1.0e-17 94.4 93 59.1
Nn4g22889 Nelumbo nucifera HOM05D005070 ORTHO05D005987 2.3e-17 93.2 92 55.4
HanXRQChr16g0503551 Helianthus annuus HOM05D005070 ORTHO05D005987 3.0e-17 92.8 93 53.8
MBI02_g26995_MAGBIO Magnolia biondii HOM05D005070 ORTHO05D005987 6.7e-17 91.7 64 65.6
HanXRQChr09g0271731 Helianthus annuus HOM05D005070 ORTHO05D005987 8.8e-17 91.3 93 53.8
ATR1149G117 Amborella trichopoda HOM05D005070 ORTHO05D005987 2.6e-16 89.7 63 69.8
PSO017G3759 Papaver somniferum HOM05D005070 ORTHO05D005987 3.3e-16 89.4 91 50.5
Lsat_1_v5_gn_4_72681 Lactuca sativa HOM05D005070 ORTHO05D005987 4.4e-16 89.0 93 51.6
PSO832G4075 Papaver somniferum HOM05D005070 ORTHO05D005987 5.7e-16 88.6 89 52.8
CDE10G1084 Ceratophyllum demersum HOM05D005070 ORTHO05D005987 7.5e-16 88.2 95 49.5
TAR622G0050 Trochodendron aralioides HOM05D005070 ORTHO05D005987 7.5e-16 88.2 63 65.1
DCAR_026116 Daucus carota HOM05D000306 ORTHO05D005987 1.3e-15 87.4 131 39.7
PSO478G4659 Papaver somniferum HOM05D005070 ORTHO05D005987 2.2e-15 86.7 91 50.5
ECA232G1832 Erigeron canadensis HOM05D005070 ORTHO05D005987 2.8e-15 86.3 93 50.5
Psat7g153800 Pisum sativum HOM05D005070 ORTHO05D005987 6.3e-15 85.1 78 56.4
PSO063G7000 Papaver somniferum HOM05D005070 ORTHO05D005987 1.1e-14 84.3 89 52.8
SalBow3G2397 Salvia bowleyana HOM05D005070 ORTHO05D005987 1.1e-14 84.3 77 62.3
arahy.Tifrunner.gnm1.ann1.HW74CG Arachis hypogaea HOM05D005070 ORTHO05D005987 1.4e-14 84.0 101 45.5
ClCG06G016770 Citrullus lanatus HOM05D005070 ORTHO05D005987 1.8e-14 83.6 77 59.7
arahy.Tifrunner.gnm1.ann1.K5B2QX Arachis hypogaea HOM05D005070 ORTHO05D005987 2.4e-14 83.2 101 45.5
Rhsim12G0162300 Rhododendron simsii HOM05D005070 ORTHO05D005987 3.1e-14 82.8 129 43.4
Psat7g156680 Pisum sativum HOM05D005070 ORTHO05D005987 4.1e-14 82.4 77 55.8
HPP92_017066 Vanilla planifolia HOM05D005070 ORTHO05D005987 1.2e-13 80.9 91 47.3
AUR62008276 Chenopodium quinoa HOM05D005070 ORTHO05D005987 2.7e-13 79.7 100 46.0
Haze_07448 Corylus avellana HOM05D005070 ORTHO05D005987 7.7e-13 78.2 78 52.6
Os09g0382500 Oryza sativa ssp. japonica HOM05D005070 ORTHO05D005987 1.0e-12 77.8 90 47.8
Zm00001eb098990 Zea mays HOM05D005070 ORTHO05D005987 3.8e-12 75.9 93 47.3
Zm00001eb311750 Zea mays HOM05D005070 ORTHO05D005987 5.0e-12 75.5 64 56.2
Manes.14G069501 Manihot esculenta HOM05D005070 ORTHO05D005987 1.5e-11 73.9 89 48.3
CDE10G1207 Ceratophyllum demersum HOM05D005070 ORTHO05D005987 4.2e-11 72.4 104 41.3
CARHR156520 Cardamine hirsuta HOM05D007129 ORTHO05D008680 1.2e-10 70.9 138 37.7
HPP92_017347 Vanilla planifolia HOM05D005070 ORTHO05D005987 3.6e-10 69.3 61 52.5
Thhalv10010580m.g Eutrema salsugineum HOM05D007129 ORTHO05D008680 8.0e-10 68.2 138 37.0
Sp5g14130 Schrenkiella parvula HOM05D007129 ORTHO05D008680 1.0e-09 67.8 119 39.5
Gohir.A12G276500 Gossypium hirsutum HOM05D007129 ORTHO05D008680 3.0e-09 66.2 151 33.1
Gohir.D12G277500 Gossypium hirsutum HOM05D007129 ORTHO05D008680 5.2e-09 65.5 151 33.1
AL5G27120 Arabidopsis lyrata HOM05D007129 ORTHO05D008680 8.8e-09 64.7 138 36.2
Carub.0005s1394 Capsella rubella HOM05D007129 ORTHO05D008680 8.8e-09 64.7 138 37.0
A01p25760 Brassica napus HOM05D007129 ORTHO05D008680 1.2e-08 64.3 146 32.9
BolC1t03194H Brassica oleracea HOM05D007129 ORTHO05D008680 1.2e-08 64.3 146 33.6
BraA01t02492Z Brassica rapa HOM05D007129 ORTHO05D008680 1.2e-08 64.3 146 32.9
BcaC09g49826 Brassica carinata HOM05D007129 ORTHO05D008680 2.0e-08 63.5 143 33.6
C01p32560 Brassica napus HOM05D007129 ORTHO05D008680 2.0e-08 63.5 143 33.6
AT3G47830 Arabidopsis thaliana HOM05D007129 ORTHO05D008680 4.4e-08 62.4 138 34.8
PGSC0003DMG400027010 Solanum tuberosum HOM05D000366 ORTHO05D001950 5.7e-08 62.0 67 55.2
Gorai.008G298100 Gossypium raimondii HOM05D007129 ORTHO05D008680 9.8e-08 61.2 151 32.5
PGR044G2359 Punica granatum HOM05D007129 ORTHO05D008680 6.3e-07 58.5 146 32.9
Thecc.03G005100 Theobroma cacao HOM05D007129 ORTHO05D008680 6.3e-07 58.5 146 31.5
Duzib205G1103 Durio zibethinus HOM05D007129 ORTHO05D008680 8.3e-07 58.2 149 31.5
Atru.chr9.2406 Acer truncatum HOM05D007129 ORTHO05D008680 1.1e-06 57.8 151 31.8
BcaNung06176 Brassica carinata HOM05D007129 ORTHO05D008680 1.1e-06 57.8 138 33.3
Ciclev10021561m.g Citrus clementina HOM05D007129 ORTHO05D008680 1.1e-06 57.8 138 34.1
COL.COLO4_04322 Corchorus olitorius HOM05D002131 ORTHO05D008680 1.1e-06 57.8 136 32.4
CBR_g34554 Chara braunii HOM05D005070 ORTHO05D005987 1.8e-06 57.0 57 50.9
Lalb_Chr12g0201391 Lupinus albus HOM05D007129 ORTHO05D008680 1.8e-06 57.0 146 30.8
Mapoly0038s0062 Marchantia polymorpha HOM05D005070 ORTHO05D005987 1.8e-06 57.0 58 50.0
SEGI_14877 Sequoiadendron giganteum HOM05D005070 ORTHO05D005987 1.8e-06 57.0 48 56.2
BcaB05g23081 Brassica carinata HOM05D007129 ORTHO05D008680 2.4e-06 56.6 49 61.2
Manes.06G101100 Manihot esculenta HOM05D007129 ORTHO05D008680 2.4e-06 56.6 147 31.3
Phvul.003G197200 Phaseolus vulgaris HOM05D007129 ORTHO05D008680 3.1e-06 56.2 146 30.1
QL10p012428 Quercus lobata HOM05D007129 ORTHO05D008680 4.1e-06 55.8 139 32.4
THA.LOC104821441 Tarenaya hassleriana HOM05D007129 ORTHO05D008680 4.1e-06 55.8 144 32.6
arahy.Tifrunner.gnm1.ann1.67M40U Arachis hypogaea HOM05D005070 ORTHO05D005987 7.0e-06 55.1 50 52.0
VMungo1215G0430 Vigna mungo HOM05D007129 ORTHO05D008680 7.0e-06 55.1 147 30.6
MBI18_g17201_MAGBIO Magnolia biondii HOM05D002807 ORTHO05D005987 9.1e-06 54.7 38 65.8


User provided reference genes

Program Settings