Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g01637 Brassica carinata HOM05D005952 ORTHO05D007262 3.0e-173 612.1 391 100.0
BolC3t19647H Brassica oleracea HOM05D005952 ORTHO05D007262 8.8e-173 610.5 391 99.7
C03p73530 Brassica napus HOM05D005952 ORTHO05D007262 1.1e-170 603.6 332 96.7
A08p26510 Brassica napus HOM05D005952 ORTHO05D007262 5.4e-170 601.3 332 98.5
BraA08t34603Z Brassica rapa HOM05D005952 ORTHO05D007262 5.4e-170 601.3 332 98.8
BcaB03g12064 Brassica carinata HOM05D005952 ORTHO05D007262 1.0e-165 587.0 332 97.6
Sp1g23460 Schrenkiella parvula HOM05D005952 ORTHO05D007262 9.5e-159 563.9 395 93.7
CARHR026780 Cardamine hirsuta HOM05D005952 ORTHO05D007262 2.6e-156 555.8 332 90.7
AT1G24310 Arabidopsis thaliana HOM05D005952 ORTHO05D007262 1.4e-149 533.5 336 88.1
AL1G40610 Arabidopsis lyrata HOM05D005952 ORTHO05D007262 1.8e-149 533.1 335 88.1
Carub.0001s2576 Capsella rubella HOM05D005952 ORTHO05D007262 3.0e-144 515.8 329 86.3
THA.LOC104825515 Tarenaya hassleriana HOM05D005952 ORTHO05D007262 3.6e-142 508.8 326 83.7
Aa31LG7G9800 Aethionema arabicum HOM05D005952 ORTHO05D007262 6.8e-141 504.6 335 82.4
CiPaw.06G101100 Carya illinoinensis HOM05D005952 ORTHO05D007262 6.4e-131 471.5 329 77.8
QL03p053757 Quercus lobata HOM05D005952 ORTHO05D007262 6.0e-129 464.9 329 77.2
Prupe.1G228700 Prunus persica HOM05D005952 ORTHO05D007262 1.0e-128 464.2 331 74.3
TWI75G1563 Tripterygium wilfordii HOM05D005952 ORTHO05D007262 3.0e-128 462.6 330 76.1
Manes.13G018200 Manihot esculenta HOM05D005952 ORTHO05D007262 5.6e-127 458.4 330 74.8
MD16G1117500 Malus domestica HOM05D005952 ORTHO05D007262 2.8e-126 456.1 330 75.5
Ciclev10031923m.g Citrus clementina HOM05D005952 ORTHO05D007262 9.0e-125 451.1 327 77.1
ClCG11G013770 Citrullus lanatus HOM05D005952 ORTHO05D007262 1.3e-123 447.2 330 73.3
Gohir.D02G150400 Gossypium hirsutum HOM05D005952 ORTHO05D007262 1.3e-123 447.2 336 72.3
Atru.chr11.2304 Acer truncatum HOM05D005952 ORTHO05D007262 2.9e-123 446.0 329 76.0
arahy.Tifrunner.gnm1.ann1.19W7I6 Arachis hypogaea HOM05D005952 ORTHO05D007262 2.9e-123 446.0 330 72.7
Sabra10G0046500 Salix brachista HOM05D005952 ORTHO05D007262 3.8e-123 445.7 338 74.0
Gohir.A03G127000 Gossypium hirsutum HOM05D005952 ORTHO05D007262 1.4e-122 443.7 336 72.0
MELO3C011875.2 Cucumis melo HOM05D005952 ORTHO05D007262 1.9e-122 443.4 330 72.4
Potri.010G059100 Populus trichocarpa HOM05D005952 ORTHO05D007262 1.9e-122 443.4 333 74.2
Cpa.g.sc43.12 Carica papaya HOM05D005952 ORTHO05D007262 2.4e-122 443.0 355 71.3
CsaV3_5G030360 Cucumis sativus L. HOM05D005952 ORTHO05D007262 5.4e-122 441.8 330 72.1
Gorai.005G168700 Gossypium raimondii HOM05D005952 ORTHO05D007262 5.4e-122 441.8 336 71.7
Cfa009332 Carpinus fangiana HOM05D005952 ORTHO05D007262 9.3e-122 441.0 325 73.2
RcHm_v2.0_Chr4g0430621 Rosa chinensis HOM05D005952 ORTHO05D007262 1.9e-119 433.3 339 69.3
Thecc.02G212400 Theobroma cacao HOM05D005952 ORTHO05D007262 3.3e-119 432.6 332 70.2
Eucgr.B03481 Eucalyptus grandis HOM05D005952 ORTHO05D007262 4.3e-119 432.2 318 75.5
Psat5g094800 Pisum sativum HOM05D005952 ORTHO05D007262 7.4e-119 431.4 320 75.3
COL.COLO4_20379 Corchorus olitorius HOM05D005952 ORTHO05D007262 9.6e-119 431.0 360 68.1
FAN07G2304 Fragaria x ananassa HOM05D005952 ORTHO05D007262 1.3e-118 430.6 337 70.9
Solyc12g035650.2 Solanum lycopersicum HOM05D005952 ORTHO05D007262 2.1e-118 429.9 339 71.7
Sopen12g015910 Solanum pennellii HOM05D005952 ORTHO05D007262 2.1e-118 429.9 339 71.7
VMungo1383G3287 Vigna mungo HOM05D005952 ORTHO05D007262 2.8e-118 429.5 322 71.4
HanXRQChr08g0207671 Helianthus annuus HOM05D005952 ORTHO05D007262 6.2e-118 428.3 340 68.2
TAR622G0739 Trochodendron aralioides HOM05D005952 ORTHO05D007262 6.2e-118 428.3 338 73.1
CANSAT01G2967 Cannabis sativa HOM05D005952 ORTHO05D007262 8.1e-118 427.9 339 70.2
Potri.008G176100 Populus trichocarpa HOM05D005952 ORTHO05D007262 1.1e-117 427.6 339 72.0
PGR102G2583 Punica granatum HOM05D005952 ORTHO05D007262 1.1e-117 427.6 327 69.7
CAN.G34.9 Capsicum annuum HOM05D005952 ORTHO05D007262 1.4e-117 427.2 344 70.1
Phvul.001G260500 Phaseolus vulgaris HOM05D005952 ORTHO05D007262 3.1e-117 426.0 319 74.3
Duzib251G0036 Durio zibethinus HOM05D005952 ORTHO05D007262 6.9e-117 424.9 323 70.3
Lsat_1_v5_gn_8_149221 Lactuca sativa HOM05D005952 ORTHO05D007262 9.0e-117 424.5 341 68.9
Nn3g16502 Nelumbo nucifera HOM05D005952 ORTHO05D007262 1.5e-116 423.7 336 71.7
FAN07G2604 Fragaria x ananassa HOM05D005952 ORTHO05D007262 2.6e-116 422.9 334 70.4
FAN24G3446 Fragaria x ananassa HOM05D005952 ORTHO05D007262 2.6e-116 422.9 334 70.4
MSTRG.7992 Avicennia marina HOM05D005952 ORTHO05D007262 5.8e-116 421.8 331 69.5
Cc00_g13550 Coffea canephora HOM05D005952 ORTHO05D007262 1.3e-115 420.6 326 70.9
Haze_12392 Corylus avellana HOM05D005952 ORTHO05D007262 1.1e-114 417.5 329 68.7
Lj3A1066G68 Lonicera japonica HOM05D005952 ORTHO05D007262 1.9e-114 416.8 336 69.0
Dinv14825 Davidia involucrata HOM05D005952 ORTHO05D007262 2.4e-114 416.4 343 70.3
Aqoxy5G03416 Aquilegia oxysepala HOM05D005952 ORTHO05D007262 3.2e-114 416.0 346 68.2
TWI36G0663 Tripterygium wilfordii HOM05D005952 ORTHO05D007262 3.2e-114 416.0 278 78.1
Actinidia20698 Actinidia chinensis HOM05D005952 ORTHO05D007262 1.2e-113 414.1 325 72.0
Glyma.11G249200 Glycine max HOM05D005952 ORTHO05D007262 3.5e-113 412.5 340 69.7
Hund06080 Selenicereus undatus HOM05D005952 ORTHO05D007262 3.5e-113 412.5 327 69.7
Sed0028059 Sechium edule HOM05D005952 ORTHO05D007262 4.6e-113 412.1 316 70.6
Peaxi162Scf00518g00512 Petunia axillaris HOM05D005952 ORTHO05D007262 7.9e-113 411.4 345 68.1
Oeu036880.1 Olea europaea HOM05D005952 ORTHO05D007262 1.0e-112 411.0 368 64.1
AUR62024128 Chenopodium quinoa HOM05D005952 ORTHO05D007262 1.8e-112 410.2 332 68.4
Glyma.18G008100 Glycine max HOM05D005952 ORTHO05D007262 1.8e-112 410.2 291 74.9
Thhalv10008300m.g Eutrema salsugineum HOM05D005952 ORTHO05D007262 2.3e-112 409.8 245 91.8
Lj1g0012703 Lotus japonicus HOM05D005952 ORTHO05D007262 2.3e-112 409.8 322 68.3
Nitab4.5_0000492g0130 Nicotiana tabacum HOM05D005952 ORTHO05D007262 3.9e-112 409.1 329 69.3
CSS0022532 Camellia sinensis var. sinensis HOM05D005952 ORTHO05D007262 6.7e-112 408.3 317 73.8
CSS0029993 Camellia sinensis var. sinensis HOM05D005952 ORTHO05D007262 6.7e-112 408.3 317 73.8
FvH4_4g23970 Fragaria vesca HOM05D005952 ORTHO05D007262 4.3e-111 405.6 341 66.3
Sc04g0004640 Simmondsia chinensis HOM05D005952 ORTHO05D007262 4.3e-111 405.6 324 67.9
GSVIVG01010442001 Vitis vinifera HOM05D005952 ORTHO05D007262 5.6e-111 405.2 263 78.3
Lalb_Chr12g0206321 Lupinus albus HOM05D005952 ORTHO05D007262 9.6e-111 404.4 331 68.9
EL10Ac6g13481 Beta vulgaris HOM05D005952 ORTHO05D007262 2.8e-110 402.9 334 66.8
Ah.02g130720 Amaranthus hybridus HOM05D005952 ORTHO05D007262 6.2e-110 401.7 322 68.6
FAN03G3372 Fragaria x ananassa HOM05D005952 ORTHO05D007262 6.2e-110 401.7 344 67.4
MD13G1116800 Malus domestica HOM05D005952 ORTHO05D007262 3.1e-109 399.4 263 78.3
MBI11_g07451_MAGBIO Magnolia biondii HOM05D005952 ORTHO05D007262 9.0e-109 397.9 276 74.3
Medtr3g085590 Medicago truncatula HOM05D005952 ORTHO05D007262 9.0e-109 397.9 329 69.9
SGA_v2.0_scaffold9G04762 Striga asiatica HOM05D005952 ORTHO05D007262 4.5e-108 395.6 281 72.6
Migut.K00712 Erythranthe guttata HOM05D005952 ORTHO05D007262 7.6e-108 394.8 339 66.1
Nitab4.5_0002026g0100 Nicotiana tabacum HOM05D005952 ORTHO05D007262 1.3e-107 394.0 333 68.8
ATR0561G264 Amborella trichopoda HOM05D005952 ORTHO05D007262 2.5e-106 389.8 284 69.7
CDE02G4251 Ceratophyllum demersum HOM05D005952 ORTHO05D007262 5.5e-106 388.7 328 63.4
Sed0012291 Sechium edule HOM05D005952 ORTHO05D007262 1.2e-105 387.5 322 65.5
ECA233G5976 Erigeron canadensis HOM05D005952 ORTHO05D007262 1.9e-103 380.2 335 63.6
arahy.Tifrunner.gnm1.ann1.2251QZ Arachis hypogaea HOM05D005952 ORTHO05D007262 1.4e-101 374.0 330 63.9
Rhsim12G0102200 Rhododendron simsii HOM05D005952 ORTHO05D007262 1.4e-101 374.0 418 57.4
Ca_16474_v3 Cicer arietinum L. HOM05D005952 ORTHO05D007262 4.6e-97 359.0 246 75.6
AUR62005599 Chenopodium quinoa HOM05D005952 ORTHO05D007262 1.1e-95 354.4 297 66.7
DCAR_031192 Daucus carota HOM05D005952 ORTHO05D007262 1.5e-95 354.0 241 75.1
FAN27G1928 Fragaria x ananassa HOM05D005952 ORTHO05D007262 7.4e-95 351.7 339 61.9
PSO782G2816 Papaver somniferum HOM05D005952 ORTHO05D007262 7.4e-95 351.7 322 64.0
PSO063G3255 Papaver somniferum HOM05D005952 ORTHO05D007262 1.3e-94 350.9 322 64.3
FAN21G1414 Fragaria x ananassa HOM05D005952 ORTHO05D007262 8.2e-94 348.2 339 61.9
Os07g0295400 Oryza sativa ssp. japonica HOM05D005952 ORTHO05D007262 1.2e-92 344.4 269 64.3
HPP92_023193 Vanilla planifolia HOM05D005952 ORTHO05D007262 7.7e-92 341.7 305 61.6
Zm00001eb305390 Zea mays HOM05D005952 ORTHO05D007262 7.7e-92 341.7 295 60.7
AL6G39900 Arabidopsis lyrata HOM05D005075 ORTHO05D007097 2.5e-90 336.7 278 71.2
SHI17953 Sapria himalayana HOM05D005952 ORTHO05D007262 1.3e-86 324.3 278 61.9
SEGI_29251 Sequoiadendron giganteum HOM05D005952 ORTHO05D007262 4.8e-86 322.4 269 62.1
Mapoly0010s0010 Marchantia polymorpha HOM05D005952 ORTHO05D007262 2.9e-83 313.2 272 59.9
FAN04G2616 Fragaria x ananassa HOM05D005952 ORTHO05D007262 6.5e-83 312.0 224 73.2
Pp3c10_15930 Physcomitrium patens HOM05D005952 ORTHO05D007262 9.4e-82 308.1 294 56.5
Pp3c10_15937 Physcomitrium patens HOM05D005952 ORTHO05D007262 9.4e-82 308.1 294 56.5
CDE06G2258 Ceratophyllum demersum HOM05D005952 ORTHO05D007262 2.7e-81 306.6 330 52.7
SalBow2G2019 Salvia bowleyana HOM05D005952 ORTHO05D007262 3.9e-80 302.8 362 52.2
CBR_g21943 Chara braunii HOM05D005952 ORTHO05D007262 2.6e-76 290.0 295 52.2
AagrBONN_evm.TU.Sc2ySwM_362.1552 Anthoceros agrestis HOM05D005952 ORTHO05D007262 4.5e-76 289.3 265 54.3
CBR_g39502 Chara braunii HOM05D005952 ORTHO05D007262 8.5e-75 285.0 300 50.0
FAN04G0683 Fragaria x ananassa HOM05D005952 ORTHO05D007262 1.6e-68 264.2 219 68.5
Actinidia09658 Actinidia chinensis HOM05D005952 ORTHO05D007262 1.5e-66 257.7 313 55.0
TWI36G1659 Tripterygium wilfordii HOM05D005952 ORTHO05D007262 1.5e-66 257.7 338 49.7
Hma1.2p1_0668F.1_g200020 Hydrangea macrophylla HOM05D005952 ORTHO05D007262 9.1e-61 238.4 171 74.9
FAN23G0106 Fragaria x ananassa HOM05D005952 ORTHO05D007262 8.0e-49 198.7 181 65.2
Pp3c14_14130 Physcomitrium patens HOM05D005952 ORTHO05D007262 2.0e-47 194.1 208 51.4
Hma1.2p1_0668F.1_g200040 Hydrangea macrophylla HOM05D005952 ORTHO05D007262 1.7e-43 181.0 177 65.0
FAN04G0535 Fragaria x ananassa HOM05D005952 ORTHO05D007262 6.0e-28 129.4 108 66.7
SEGI_23869 Sequoiadendron giganteum HOM05D005952 ORTHO05D007262 5.6e-26 122.9 109 55.0
HanXRQChr03g0071651 Helianthus annuus HOM05D005952 ORTHO05D007262 1.2e-25 121.7 93 64.5
MCO04G375 Micromonas commoda HOM05D005952 ORTHO05D007262 1.9e-18 97.8 333 24.3
Migut.K01177 Erythranthe guttata HOM05D005952 ORTHO05D007262 4.3e-18 96.7 102 59.8
Cre12.g542950 Chlamydomonas reinhardtii HOM05D005952 ORTHO05D007262 1.6e-17 94.7 255 29.8
SEGI_30692 Sequoiadendron giganteum HOM05D005952 ORTHO05D007262 4.7e-17 93.2 114 45.6
Oeu029609.1 Olea europaea HOM05D005952 ORTHO05D007262 4.0e-16 90.1 62 67.7
CARHR184250 Cardamine hirsuta HOM05D005952 ORTHO05D007262 1.9e-10 71.2 52 69.2
BcaC03g16356 Brassica carinata HOM05D029489 ORTHO05D007262 1.5e-07 61.6 88 42.0
BcaC01g03672 Brassica carinata HOM05D029489 ORTHO05D091160 8.4e-06 55.8 34 76.5
BcaC04g20962 Brassica carinata HOM05D029489 ORTHO05D090624 8.4e-06 55.8 34 76.5


User provided reference genes

Program Settings