Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g01495 Brassica carinata HOM05D005190 ORTHO05D006183 3.3e-59 231.5 117 100.0
BcaC05g27594 Brassica carinata HOM05D005190 ORTHO05D006183 4.1e-41 171.4 136 72.1
A05p21200 Brassica napus HOM05D005190 ORTHO05D006183 4.1e-41 171.4 136 72.1
C05p35790 Brassica napus HOM05D005190 ORTHO05D006183 4.1e-41 171.4 136 72.1
BraA05t21026Z Brassica rapa HOM05D005190 ORTHO05D006183 4.1e-41 171.4 136 72.1
Sp1g35120 Schrenkiella parvula HOM05D005190 ORTHO05D006183 6.6e-31 137.5 105 71.4
THA.LOC104800562 Tarenaya hassleriana HOM05D005190 ORTHO05D006183 6.6e-31 137.5 136 58.8
Thhalv10011800m.g Eutrema salsugineum HOM05D005190 ORTHO05D006183 1.9e-30 136.0 104 71.2
BcaC07g37169 Brassica carinata HOM05D005190 ORTHO05D006183 7.3e-30 134.0 104 70.2
A08p05180 Brassica napus HOM05D005190 ORTHO05D006183 7.3e-30 134.0 104 70.2
C08p05420 Brassica napus HOM05D005190 ORTHO05D006183 7.3e-30 134.0 104 70.2
BolC8t47359H Brassica oleracea HOM05D005190 ORTHO05D006183 7.3e-30 134.0 104 70.2
BraA08t32536Z Brassica rapa HOM05D005190 ORTHO05D006183 7.3e-30 134.0 104 70.2
BcaB04g17462 Brassica carinata HOM05D005190 ORTHO05D006183 9.5e-30 133.7 105 69.5
AT1G48160 Arabidopsis thaliana HOM05D005190 ORTHO05D006183 3.6e-29 131.7 105 67.6
Carub.0001s3725 Capsella rubella HOM05D005190 ORTHO05D006183 3.6e-29 131.7 104 68.3
AL8G32340 Arabidopsis lyrata HOM05D005190 ORTHO05D006183 8.0e-29 130.6 105 66.7
AL1G54730 Arabidopsis lyrata HOM05D005190 ORTHO05D006183 2.3e-28 129.0 104 66.3
Aa31LG10G5580 Aethionema arabicum HOM05D005190 ORTHO05D006183 3.0e-28 128.6 104 65.4
BolC5t32295H Brassica oleracea HOM05D005190 ORTHO05D006183 6.8e-28 127.5 125 61.6
Gohir.D06G202900 Gossypium hirsutum HOM05D005190 ORTHO05D006183 8.9e-28 127.1 135 54.1
Gorai.010G236800 Gossypium raimondii HOM05D005190 ORTHO05D006183 8.9e-28 127.1 135 54.1
Potri.015G036700 Populus trichocarpa HOM05D005190 ORTHO05D006183 1.5e-27 126.3 136 55.1
PGR044G0309 Punica granatum HOM05D005190 ORTHO05D006183 1.5e-27 126.3 136 52.2
Gohir.A06G195300 Gossypium hirsutum HOM05D005190 ORTHO05D006183 2.6e-27 125.6 135 54.1
HPP92_019515 Vanilla planifolia HOM05D005190 ORTHO05D006183 2.6e-27 125.6 136 53.7
Cpa.g.sc146.40 Carica papaya HOM05D005190 ORTHO05D006183 3.4e-27 125.2 136 53.7
QL06p013825 Quercus lobata HOM05D005190 ORTHO05D006183 3.4e-27 125.2 134 56.7
CiPaw.01G130900 Carya illinoinensis HOM05D005190 ORTHO05D006183 4.4e-27 124.8 135 56.3
Sabra15G0031200 Salix brachista HOM05D005190 ORTHO05D006183 4.4e-27 124.8 136 55.1
TWI38G0007 Tripterygium wilfordii HOM05D005190 ORTHO05D006183 4.4e-27 124.8 136 53.7
GSVIVG01017663001 Vitis vinifera HOM05D005190 ORTHO05D006183 5.8e-27 124.4 135 54.8
Glyma.02G064900 Glycine max HOM05D005190 ORTHO05D006183 9.8e-27 123.6 136 52.9
HanXRQChr06g0166421 Helianthus annuus HOM05D005190 ORTHO05D006183 9.8e-27 123.6 136 53.7
Lj4g0016109 Lotus japonicus HOM05D005190 ORTHO05D006183 9.8e-27 123.6 136 52.9
CARHR037790 Cardamine hirsuta HOM05D005190 ORTHO05D006183 1.3e-26 123.2 105 63.8
Cfa006455 Carpinus fangiana HOM05D005190 ORTHO05D006183 1.3e-26 123.2 135 54.8
DCAR_006510 Daucus carota HOM05D005190 ORTHO05D006183 1.3e-26 123.2 136 53.7
Lalb_Chr13g0298851 Lupinus albus HOM05D005190 ORTHO05D006183 1.3e-26 123.2 136 51.5
CSS0027522 Camellia sinensis var. sinensis HOM05D005190 ORTHO05D006183 1.7e-26 122.9 136 55.1
CSS0047604 Camellia sinensis var. sinensis HOM05D005190 ORTHO05D006183 1.7e-26 122.9 136 55.1
Dinv09552 Davidia involucrata HOM05D005190 ORTHO05D006183 1.7e-26 122.9 137 54.7
Dinv10386 Davidia involucrata HOM05D005190 ORTHO05D006183 1.7e-26 122.9 137 54.7
Ciclev10006189m.g Citrus clementina HOM05D005190 ORTHO05D006183 2.2e-26 122.5 136 53.7
Glyma.16G146000 Glycine max HOM05D005190 ORTHO05D006183 2.2e-26 122.5 136 52.9
GSVIVG01017602001 Vitis vinifera HOM05D005190 ORTHO05D006183 2.2e-26 122.5 135 54.8
Hma1.2p1_0013F.1_g007820 Hydrangea macrophylla HOM05D005190 ORTHO05D006183 2.9e-26 122.1 136 50.7
Medtr7g096570 Medicago truncatula HOM05D005190 ORTHO05D006183 2.9e-26 122.1 136 51.5
Potri.012G045500 Populus trichocarpa HOM05D005190 ORTHO05D006183 2.9e-26 122.1 136 53.7
Ca_02362_v3 Cicer arietinum L. HOM05D005190 ORTHO05D006183 3.7e-26 121.7 136 52.9
Duzib235G0490 Durio zibethinus HOM05D005190 ORTHO05D006183 3.7e-26 121.7 135 54.8
Manes.17G016100 Manihot esculenta HOM05D005190 ORTHO05D006183 3.7e-26 121.7 136 52.2
ECA246G1588 Erigeron canadensis HOM05D005190 ORTHO05D006183 6.4e-26 120.9 136 54.4
Lalb_Chr07g0181821 Lupinus albus HOM05D005190 ORTHO05D006183 6.4e-26 120.9 136 50.7
TPR.G12566 Trifolium pratense HOM05D005190 ORTHO05D006183 6.4e-26 120.9 136 50.7
COL.COLO4_30940 Corchorus olitorius HOM05D005190 ORTHO05D006183 1.1e-25 120.2 143 52.4
arahy.Tifrunner.gnm1.ann1.JER3JH Arachis hypogaea HOM05D005190 ORTHO05D006183 1.4e-25 119.8 136 50.7
CsaV3_3G015480 Cucumis sativus L. HOM05D005190 ORTHO05D006183 1.4e-25 119.8 136 52.2
Prupe.8G102200 Prunus persica HOM05D005190 ORTHO05D006183 1.4e-25 119.8 136 53.7
Sed0026997 Sechium edule HOM05D005190 ORTHO05D006183 1.4e-25 119.8 136 52.2
Actinidia01056 Actinidia chinensis HOM05D005190 ORTHO05D006183 1.9e-25 119.4 136 52.9
arahy.Tifrunner.gnm1.ann1.CG6LTA Arachis hypogaea HOM05D005190 ORTHO05D006183 1.9e-25 119.4 136 50.0
MELO3C006747.2 Cucumis melo HOM05D005190 ORTHO05D006183 1.9e-25 119.4 136 51.5
CsaV3_4G025830 Cucumis sativus L. HOM05D005190 ORTHO05D006183 1.9e-25 119.4 136 51.5
Thecc.06G136600 Theobroma cacao HOM05D005190 ORTHO05D006183 1.9e-25 119.4 135 54.1
MSTRG.12184 Avicennia marina HOM05D005190 ORTHO05D006183 2.4e-25 119.0 135 54.8
FAN07G0799 Fragaria x ananassa HOM05D005190 ORTHO05D006183 2.4e-25 119.0 136 53.7
Lsat_1_v5_gn_3_12780 Lactuca sativa HOM05D005190 ORTHO05D006183 2.4e-25 119.0 136 52.9
Cc07_g19070 Coffea canephora HOM05D005190 ORTHO05D006183 3.2e-25 118.6 136 52.9
Phvul.004G071200 Phaseolus vulgaris HOM05D005190 ORTHO05D006183 3.2e-25 118.6 136 50.7
TPR.G22255 Trifolium pratense HOM05D005190 ORTHO05D006183 3.2e-25 118.6 135 49.6
TAR629G3462 Trochodendron aralioides HOM05D005190 ORTHO05D006183 3.2e-25 118.6 135 50.4
Sabra12G0031600 Salix brachista HOM05D005190 ORTHO05D006183 4.1e-25 118.2 136 52.2
FvH4_4g21210 Fragaria vesca HOM05D005190 ORTHO05D006183 5.4e-25 117.9 136 52.9
FAN12G1005 Fragaria x ananassa HOM05D005190 ORTHO05D006183 5.4e-25 117.9 136 52.9
CANSAT35G0272 Cannabis sativa HOM05D005190 ORTHO05D006183 7.0e-25 117.5 136 52.9
RcHm_v2.0_Chr4g0426821 Rosa chinensis HOM05D005190 ORTHO05D006183 7.0e-25 117.5 136 52.9
Haze_00795 Corylus avellana HOM05D005582 ORTHO05D007028 9.2e-25 117.1 135 53.3
Phvul.004G071300 Phaseolus vulgaris HOM05D005190 ORTHO05D006183 9.2e-25 117.1 136 50.0
FAN17G1108 Fragaria x ananassa HOM05D000385 ORTHO05D006183 1.2e-24 116.7 134 53.0
HanXRQChr17g0534691 Helianthus annuus HOM05D005190 ORTHO05D006183 1.2e-24 116.7 136 50.0
Peaxi162Scf00074g00538 Petunia axillaris HOM05D005190 ORTHO05D006183 1.2e-24 116.7 136 50.7
Rhsim04G0247000 Rhododendron simsii HOM05D005190 ORTHO05D006183 1.2e-24 116.7 136 50.7
TWI63G0483 Tripterygium wilfordii HOM05D005190 ORTHO05D006183 1.2e-24 116.7 136 50.7
Duzib192G0082 Durio zibethinus HOM05D005190 ORTHO05D006183 1.6e-24 116.3 135 52.6
MBI19_g06603_MAGBIO Magnolia biondii HOM05D005190 ORTHO05D006183 1.6e-24 116.3 135 51.9
MD13G1144000 Malus domestica HOM05D005190 ORTHO05D006183 2.0e-24 115.9 136 49.3
ClCG04G007440 Citrullus lanatus HOM05D005190 ORTHO05D006183 4.6e-24 114.8 136 49.3
Oeu009981.1 Olea europaea HOM05D005190 ORTHO05D006183 4.6e-24 114.8 135 52.6
TAR636G2254 Trochodendron aralioides HOM05D005190 ORTHO05D006183 6.0e-24 114.4 135 52.6
Nn3g18945 Nelumbo nucifera HOM05D005190 ORTHO05D006183 1.0e-23 113.6 136 51.5
PGSC0003DMG400012133 Solanum tuberosum HOM05D005190 ORTHO05D006183 1.3e-23 113.2 136 51.5
Migut.N00575 Erythranthe guttata HOM05D005190 ORTHO05D006183 1.7e-23 112.8 135 49.6
Psat0ss1196g0480 Pisum sativum HOM05D005190 ORTHO05D006183 1.7e-23 112.8 131 50.4
Os06g0342100 Oryza sativa ssp. japonica HOM05D005190 ORTHO05D006183 3.0e-23 112.1 136 50.0
SGA_v2.0_scaffold36G14289 Striga asiatica HOM05D005190 ORTHO05D006183 3.0e-23 112.1 136 49.3
TPR.G39662 Trifolium pratense HOM05D005190 ORTHO05D006183 3.9e-23 111.7 131 51.1
ATR0730G183 Amborella trichopoda HOM05D005190 ORTHO05D006183 5.0e-23 111.3 135 51.1
arahy.Tifrunner.gnm1.ann1.R3ADAS Arachis hypogaea HOM05D005190 ORTHO05D006183 8.6e-23 110.5 129 49.6
arahy.Tifrunner.gnm1.ann1.W6NXGM Arachis hypogaea HOM05D005190 ORTHO05D006183 1.5e-22 109.8 135 48.1
BcaC08g43007 Brassica carinata HOM05D005190 ORTHO05D006183 2.5e-22 109.0 70 77.1
Solyc08g082740.4 Solanum lycopersicum HOM05D005190 ORTHO05D006183 3.3e-22 108.6 136 48.5
Sopen08g030970 Solanum pennellii HOM05D005190 ORTHO05D006183 3.3e-22 108.6 136 48.5
SalBow4G3050 Salvia bowleyana HOM05D005190 ORTHO05D006183 4.3e-22 108.2 135 48.9
SEGI_18361 Sequoiadendron giganteum HOM05D005190 ORTHO05D006183 7.3e-22 107.5 135 51.1
Lsat_1_v5_gn_6_83381 Lactuca sativa HOM05D005190 ORTHO05D006183 9.5e-22 107.1 105 54.3
Sc06g0001490 Simmondsia chinensis HOM05D005190 ORTHO05D006183 9.5e-22 107.1 136 48.5
Zm00001eb066670 Zea mays HOM05D005190 ORTHO05D006183 9.5e-22 107.1 136 47.8
Zm00001eb081370 Zea mays HOM05D005190 ORTHO05D006183 9.5e-22 107.1 136 47.8
C06p02560 Brassica napus HOM05D005190 ORTHO05D006183 1.2e-21 106.7 93 61.3
Nitab4.5_0002367g0140 Nicotiana tabacum HOM05D005190 ORTHO05D006183 1.2e-21 106.7 136 47.8
Nitab4.5_0002793g0070 Nicotiana tabacum HOM05D005190 ORTHO05D006183 1.2e-21 106.7 136 47.8
SGA_v2.0_scaffold198G41066 Striga asiatica HOM05D005190 ORTHO05D006183 2.1e-21 105.9 136 47.8
CAN.G567.34 Capsicum annuum HOM05D005190 ORTHO05D006183 6.2e-21 104.4 136 47.8
AUR62002533 Chenopodium quinoa HOM05D005190 ORTHO05D006183 5.2e-20 101.3 137 48.2
AUR62023660 Chenopodium quinoa HOM05D005190 ORTHO05D006183 6.8e-20 100.9 136 46.3
EL10Ac3g06230 Beta vulgaris HOM05D005190 ORTHO05D006183 2.0e-19 99.4 136 48.5
PSO478G2609 Papaver somniferum HOM05D005190 ORTHO05D006183 2.0e-19 99.4 103 51.5
PSO782G1806 Papaver somniferum HOM05D005190 ORTHO05D006183 2.0e-19 99.4 103 51.5
Pp3c3_17800 Physcomitrium patens HOM05D005190 ORTHO05D006183 2.6e-19 99.0 138 45.7
Mapoly0004s0269 Marchantia polymorpha HOM05D005190 ORTHO05D006183 1.3e-18 96.7 135 46.7
MD13G1143900 Malus domestica HOM05D005190 ORTHO05D006183 3.7e-18 95.1 125 45.6
TPR.G16114 Trifolium pratense HOM05D005190 ORTHO05D006183 3.7e-18 95.1 71 62.0
arahy.Tifrunner.gnm1.ann1.AFL9DX Arachis hypogaea HOM05D005190 ORTHO05D006183 1.1e-17 93.6 113 48.7
BolC6t35384H Brassica oleracea HOM05D005190 ORTHO05D006183 1.1e-17 93.6 54 83.3
MBI07_g26367_MAGBIO Magnolia biondii HOM05D005190 ORTHO05D006183 1.6e-16 89.7 104 49.0
Ah.07g203500 Amaranthus hybridus HOM05D005190 ORTHO05D006183 2.7e-16 89.0 70 62.9
CBR_g39024 Chara braunii HOM05D005190 ORTHO05D006183 2.5e-14 82.4 133 42.1
ClCG05G006830 Citrullus lanatus HOM05D005190 ORTHO05D006183 1.2e-13 80.1 46 71.7
Eucgr.G02037 Eucalyptus grandis HOM05D005190 ORTHO05D006183 1.2e-11 73.6 47 66.0
AagrBONN_evm.TU.Sc2ySwM_362.2360 Anthoceros agrestis HOM05D005190 ORTHO05D006183 4.4e-11 71.6 135 37.0
SMO352G0034 Selaginella moellendorffii HOM05D005190 ORTHO05D006183 2.2e-10 69.3 99 49.5
Haze_12814 Corylus avellana HOM05D000165 ORTHO05D001328 8.3e-10 67.4 60 55.0
unitig_747.g21355 Utricularia gibba HOM05D001490 ORTHO05D001450 9.2e-09 63.9 136 37.5
MCO01G268 Micromonas commoda HOM05D005190 ORTHO05D006183 6.0e-08 61.2 130 38.5
RcHm_v2.0_Chr7g0219311 Rosa chinensis HOM05D005190 ORTHO05D006183 5.6e-06 54.7 59 45.8


User provided reference genes

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