Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g01198 Brassica carinata HOM05D041247 ORTHO05D016715 1.5e-65 252.7 127 100.0
BcaB01g00402 Brassica carinata HOM05D041247 ORTHO05D016715 2.4e-58 228.8 127 93.7
BcaC04g22492 Brassica carinata HOM05D005801 ORTHO05D016715 4.6e-38 161.4 126 69.8
BcaB03g13995 Brassica carinata HOM05D041247 ORTHO05D016715 7.9e-38 160.6 127 72.4
A07p26140 Brassica napus HOM05D005801 ORTHO05D013666 1.9e-15 86.3 158 41.8
BraA07t30260Z Brassica rapa HOM05D005801 ORTHO05D013666 4.2e-15 85.1 143 42.7
BcaC04g20246 Brassica carinata HOM05D005801 ORTHO05D016715 1.6e-14 83.2 78 61.5
BolC9t57462H Brassica oleracea HOM05D005801 ORTHO05D016715 1.6e-14 83.2 78 61.5
C09p45950 Brassica napus HOM05D005801 ORTHO05D016715 2.7e-14 82.4 78 60.3
BcaC03g16316 Brassica carinata HOM05D005801 ORTHO05D016715 1.4e-13 80.1 78 57.7
BcaNung00771 Brassica carinata HOM05D013368 ORTHO05D031982 1.1e-10 70.5 123 42.3
C03p74890 Brassica napus HOM05D013368 ORTHO05D031982 6.9e-10 67.8 123 43.1
BolC7t43482H Brassica oleracea HOM05D013368 ORTHO05D031982 6.9e-10 67.8 126 39.7
CARHR110310 Cardamine hirsuta HOM05D005801 ORTHO05D008555 2.0e-09 66.2 71 53.5
AL3G48350 Arabidopsis lyrata HOM05D005801 ORTHO05D008555 3.4e-09 65.5 71 52.1
Carub.0003s3414 Capsella rubella HOM05D005801 ORTHO05D008555 3.4e-09 65.5 71 52.1
Thhalv10002296m.g Eutrema salsugineum HOM05D005801 ORTHO05D008555 3.4e-09 65.5 71 52.1
Sp3g33210 Schrenkiella parvula HOM05D005801 ORTHO05D008555 3.4e-09 65.5 71 52.1
AT2G19870 Arabidopsis thaliana HOM05D005801 ORTHO05D008555 7.7e-09 64.3 71 50.7
BcaC06g36648 Brassica carinata HOM05D005801 ORTHO05D008555 2.9e-08 62.4 71 50.7
BolC7t40588H Brassica oleracea HOM05D005801 ORTHO05D008555 2.9e-08 62.4 71 50.7
BcaB07g33268 Brassica carinata HOM05D005801 ORTHO05D016715 3.8e-08 62.0 69 53.6
BcaC01g03242 Brassica carinata HOM05D013368 ORTHO05D091529 3.8e-08 62.0 121 40.5
BcaB03g16775 Brassica carinata HOM05D005801 ORTHO05D008555 6.5e-08 61.2 71 49.3
Gorai.001G010100 Gossypium raimondii HOM05D005801 ORTHO05D008555 8.5e-08 60.8 71 49.3
C07p01810 Brassica napus HOM05D005801 ORTHO05D008555 1.1e-07 60.5 71 47.9
A07p00840 Brassica napus HOM05D005801 ORTHO05D008555 1.4e-07 60.1 71 47.9
BraA07t27882Z Brassica rapa HOM05D005801 ORTHO05D008555 1.4e-07 60.1 71 47.9
Medtr8g102480 Medicago truncatula HOM05D005801 ORTHO05D008555 1.4e-07 60.1 71 46.5
Gohir.D07G009800 Gossypium hirsutum HOM05D005801 ORTHO05D008555 1.9e-07 59.7 71 47.9
GSVIVG01015302001 Vitis vinifera HOM05D005801 ORTHO05D008555 2.5e-07 59.3 71 46.5
TWI63G0976 Tripterygium wilfordii HOM05D005801 ORTHO05D008555 3.2e-07 58.9 70 45.7
Psat7g016720 Pisum sativum HOM05D005801 ORTHO05D008555 4.2e-07 58.5 71 45.1
C03p54440 Brassica napus HOM05D005801 ORTHO05D041341 5.5e-07 58.2 124 37.1
BolC3t17730H Brassica oleracea HOM05D005801 ORTHO05D041341 5.5e-07 58.2 124 37.1
Lalb_Chr05g0223241 Lupinus albus HOM05D005801 ORTHO05D008555 7.2e-07 57.8 71 45.1
THA.LOC104814572 Tarenaya hassleriana HOM05D005801 ORTHO05D008555 7.2e-07 57.8 71 42.3
TAR636G1320 Trochodendron aralioides HOM05D005801 ORTHO05D008555 7.2e-07 57.8 71 43.7
Gohir.A07G009500 Gossypium hirsutum HOM05D005801 ORTHO05D008555 9.4e-07 57.4 71 46.5
Lj4g0016627 Lotus japonicus HOM05D005801 ORTHO05D008555 9.4e-07 57.4 70 45.7
Peaxi162Scf00720g00044 Petunia axillaris HOM05D005801 ORTHO05D008555 9.4e-07 57.4 71 45.1
MSTRG.10602 Avicennia marina HOM05D005801 ORTHO05D008555 1.2e-06 57.0 71 43.7
Phvul.002G308600 Phaseolus vulgaris HOM05D005801 ORTHO05D008555 1.2e-06 57.0 71 45.1
VMungo0251G1949 Vigna mungo HOM05D005801 ORTHO05D008555 1.2e-06 57.0 71 45.1
arahy.Tifrunner.gnm1.ann1.BF4XTR Arachis hypogaea HOM05D005801 ORTHO05D008555 1.6e-06 56.6 71 45.1
Rhsim03G0236600 Rhododendron simsii HOM05D005801 ORTHO05D008555 1.6e-06 56.6 71 43.7
Sabra18G0076100 Salix brachista HOM05D005801 ORTHO05D008555 1.6e-06 56.6 72 43.1
SalBow1G2797 Salvia bowleyana HOM05D005801 ORTHO05D008555 1.6e-06 56.6 71 42.3
Actinidia32650 Actinidia chinensis HOM05D005801 ORTHO05D008555 2.1e-06 56.2 71 43.7
Nitab4.5_0001703g0010 Nicotiana tabacum HOM05D005801 ORTHO05D008555 2.1e-06 56.2 71 43.7
CANSAT21G1751 Cannabis sativa HOM05D005801 ORTHO05D008555 2.7e-06 55.8 71 45.1
Duzib132G0722 Durio zibethinus HOM05D005801 ORTHO05D008555 2.7e-06 55.8 71 45.1
Duzib150G1339 Durio zibethinus HOM05D005801 ORTHO05D008555 2.7e-06 55.8 71 45.1
Nitab4.5_0000066g0110 Nicotiana tabacum HOM05D005801 ORTHO05D008555 2.7e-06 55.8 71 42.3
Thecc.09G100600 Theobroma cacao HOM05D005801 ORTHO05D008555 2.7e-06 55.8 70 44.3
COL.COLO4_34743 Corchorus olitorius HOM05D005801 ORTHO05D008555 3.6e-06 55.5 72 41.7
MBI04_g34406_MAGBIO Magnolia biondii HOM05D005801 ORTHO05D008555 4.7e-06 55.1 71 43.7
Potri.018G087800 Populus trichocarpa HOM05D005801 ORTHO05D008555 4.7e-06 55.1 71 42.3
Prupe.7G219800 Prunus persica HOM05D005801 ORTHO05D008555 4.7e-06 55.1 71 43.7
QL02p041581 Quercus lobata HOM05D005801 ORTHO05D008555 4.7e-06 55.1 71 42.3
vmacro06253 Vaccinium macrocarpon HOM05D005801 ORTHO05D008555 4.7e-06 55.1 71 40.8
BcaB07g33439 Brassica carinata HOM05D005801 ORTHO05D016715 6.1e-06 54.7 58 48.3
DCAR_028663 Daucus carota HOM05D005801 ORTHO05D008555 6.1e-06 54.7 71 43.7
Oeu053186.1 Olea europaea HOM05D005801 ORTHO05D008555 6.1e-06 54.7 71 43.7
Cfa003179 Carpinus fangiana HOM05D005801 ORTHO05D008555 7.9e-06 54.3 71 42.3


User provided reference genes

Program Settings