Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g00957 Brassica carinata HOM05D002488 ORTHO05D027689 7.6e-65 250.4 128 100.0
BolC3t20925H Brassica oleracea HOM05D000639 ORTHO05D027689 1.1e-23 113.6 59 100.0
C03p86340 Brassica napus HOM05D002488 ORTHO05D027689 2.1e-22 109.4 64 93.8
C07p56980 Brassica napus HOM05D000639 ORTHO05D003485 4.4e-12 75.1 41 85.4
BcaNung00479 Brassica carinata HOM05D000639 ORTHO05D003485 5.7e-12 74.7 41 82.9
A03p58960 Brassica napus HOM05D000639 ORTHO05D003485 5.7e-12 74.7 41 82.9
C07p56940 Brassica napus HOM05D000639 ORTHO05D003485 5.7e-12 74.7 41 82.9
BolC7t46170H Brassica oleracea HOM05D000639 ORTHO05D003485 5.7e-12 74.7 41 82.9
BraA03t14956Z Brassica rapa HOM05D000639 ORTHO05D003485 5.7e-12 74.7 41 82.9
Sp7g27370 Schrenkiella parvula HOM05D000639 ORTHO05D003485 7.5e-12 74.3 41 80.5
Thhalv10026945m.g Eutrema salsugineum HOM05D000639 ORTHO05D003485 1.3e-11 73.6 41 80.5
BcaC09g51739 Brassica carinata HOM05D000639 ORTHO05D003485 1.7e-11 73.2 41 82.9
A01p08530 Brassica napus HOM05D000639 ORTHO05D003485 1.7e-11 73.2 41 82.9
C01p09960 Brassica napus HOM05D000639 ORTHO05D003485 1.7e-11 73.2 41 82.9
BolC1t00958H Brassica oleracea HOM05D000639 ORTHO05D003485 1.7e-11 73.2 41 82.9
BraA01t00802Z Brassica rapa HOM05D000639 ORTHO05D003485 1.7e-11 73.2 41 82.9
BraA08t33921Z Brassica rapa HOM05D000639 ORTHO05D003485 3.7e-11 72.0 41 80.5
BcaC01g01174 Brassica carinata HOM05D000639 ORTHO05D003485 6.3e-11 71.2 41 78.0
A08p19630 Brassica napus HOM05D000639 ORTHO05D003485 1.1e-10 70.5 41 78.0
C03p89250 Brassica napus HOM05D000639 ORTHO05D003485 1.4e-10 70.1 42 81.0
BolC3t21235H Brassica oleracea HOM05D000639 ORTHO05D003485 1.4e-10 70.1 42 81.0
CARHR237340 Cardamine hirsuta HOM05D000639 ORTHO05D003485 2.4e-10 69.3 41 73.2
Carub.0007s1104 Capsella rubella HOM05D000639 ORTHO05D003485 4.1e-10 68.6 41 75.6
AL7G22890 Arabidopsis lyrata HOM05D000639 ORTHO05D003485 1.6e-09 66.6 41 73.2
AT4G29510 Arabidopsis thaliana HOM05D000639 ORTHO05D003485 1.6e-09 66.6 41 73.2
BraA05t22593Z Brassica rapa HOM05D002488 ORTHO05D002613 2.0e-09 66.2 65 67.7
AL3G22840 Arabidopsis lyrata HOM05D002488 ORTHO05D002613 2.7e-09 65.9 67 64.2
AT3G11330 Arabidopsis thaliana HOM05D002488 ORTHO05D002613 2.7e-09 65.9 67 64.2
Carub.0003s1066 Capsella rubella HOM05D002488 ORTHO05D002613 2.7e-09 65.9 67 64.2
AL6G15760 Arabidopsis lyrata HOM05D002488 ORTHO05D002613 3.5e-09 65.5 74 59.5
AT5G05850 Arabidopsis thaliana HOM05D002488 ORTHO05D002613 3.5e-09 65.5 74 59.5
Cpa.g.sc159.31 Carica papaya HOM05D002488 ORTHO05D002613 3.5e-09 65.5 78 57.7
Sp6g37050 Schrenkiella parvula HOM05D002488 ORTHO05D002613 3.5e-09 65.5 74 63.5
THA.LOC104820028 Tarenaya hassleriana HOM05D000639 ORTHO05D003485 5.9e-09 64.7 41 70.7
BcaNung06796 Brassica carinata HOM05D002488 ORTHO05D002613 7.7e-09 64.3 74 62.2
A10p30520 Brassica napus HOM05D002488 ORTHO05D002613 7.7e-09 64.3 74 62.2
C09p70980 Brassica napus HOM05D002488 ORTHO05D002613 7.7e-09 64.3 74 62.2
BolC9t59862H Brassica oleracea HOM05D002488 ORTHO05D002613 7.7e-09 64.3 74 62.2
BraA10t45093Z Brassica rapa HOM05D002488 ORTHO05D002613 7.7e-09 64.3 74 62.2
Carub.0006s0475 Capsella rubella HOM05D002488 ORTHO05D002613 7.7e-09 64.3 74 58.1
Thhalv10013295m.g Eutrema salsugineum HOM05D002488 ORTHO05D002613 7.7e-09 64.3 74 62.2
Aa31LG2G20970 Aethionema arabicum HOM05D000639 ORTHO05D003485 1.0e-08 63.9 41 68.3
BcaC06g32293 Brassica carinata HOM05D002488 ORTHO05D002613 1.0e-08 63.9 74 62.2
A05p38020 Brassica napus HOM05D002488 ORTHO05D002613 1.0e-08 63.9 65 66.2
Sp3g09590 Schrenkiella parvula HOM05D002488 ORTHO05D002613 1.0e-08 63.9 68 61.8
BolC5t34343H Brassica oleracea HOM05D002488 ORTHO05D002613 1.7e-08 63.2 65 66.2
BcaC01g04132 Brassica carinata HOM05D002488 ORTHO05D002613 2.9e-08 62.4 69 62.3
C03p44800 Brassica napus HOM05D002488 ORTHO05D002613 2.9e-08 62.4 69 62.3
BolC3t16743H Brassica oleracea HOM05D002488 ORTHO05D002613 2.9e-08 62.4 69 62.3
CARHR207400 Cardamine hirsuta HOM05D002488 ORTHO05D002613 2.9e-08 62.4 74 58.1
AL3G48570 Arabidopsis lyrata HOM05D000639 ORTHO05D003485 3.8e-08 62.0 41 68.3
BraA03t12863Z Brassica rapa HOM05D002488 ORTHO05D002613 5.0e-08 61.6 69 59.4
C05p56780 Brassica napus HOM05D002488 ORTHO05D002613 6.5e-08 61.2 65 66.2
THA.LOC104816567 Tarenaya hassleriana HOM05D002488 ORTHO05D002613 6.5e-08 61.2 70 61.4
CARHR110120 Cardamine hirsuta HOM05D000639 ORTHO05D003485 8.5e-08 60.8 41 65.9
THA.LOC104814604 Tarenaya hassleriana HOM05D000639 ORTHO05D003485 8.5e-08 60.8 41 68.3
A03p37010 Brassica napus HOM05D002488 ORTHO05D002613 1.5e-07 60.1 69 58.0
Dinv01306 Davidia involucrata HOM05D002488 ORTHO05D002613 1.5e-07 60.1 60 61.7
Sp3g33020 Schrenkiella parvula HOM05D000639 ORTHO05D003485 1.5e-07 60.1 41 65.9
Aa31LG11G6860 Aethionema arabicum HOM05D002488 ORTHO05D002613 2.5e-07 59.3 68 61.8
A07p01050 Brassica napus HOM05D000639 ORTHO05D003485 2.5e-07 59.3 41 65.9
BraA07t27906Z Brassica rapa HOM05D000639 ORTHO05D003485 2.5e-07 59.3 41 65.9
CARHR085880 Cardamine hirsuta HOM05D002488 ORTHO05D002613 2.5e-07 59.3 67 62.7
Carub.0003s3396 Capsella rubella HOM05D000639 ORTHO05D003485 4.2e-07 58.5 41 61.0
Thhalv10002025m.g Eutrema salsugineum HOM05D000639 ORTHO05D003485 4.2e-07 58.5 40 65.0
BcaB03g16750 Brassica carinata HOM05D000639 ORTHO05D003485 5.5e-07 58.2 41 63.4
SGA_v2.0_scaffold10G05206 Striga asiatica HOM05D000639 ORTHO05D003485 5.5e-07 58.2 41 63.4
AT2G19670 Arabidopsis thaliana HOM05D000639 ORTHO05D003485 7.2e-07 57.8 41 61.0
BcaC06g36608 Brassica carinata HOM05D000639 ORTHO05D003485 7.2e-07 57.8 41 63.4
C07p02210 Brassica napus HOM05D000639 ORTHO05D003485 7.2e-07 57.8 41 63.4
BolC7t40630H Brassica oleracea HOM05D000639 ORTHO05D003485 7.2e-07 57.8 41 63.4
Thhalv10020430m.g Eutrema salsugineum HOM05D002488 ORTHO05D002613 9.4e-07 57.4 67 56.7
PSO210G0623 Papaver somniferum HOM05D000639 ORTHO05D003485 9.4e-07 57.4 39 69.2
PSO210G7603 Papaver somniferum HOM05D000639 ORTHO05D003485 9.4e-07 57.4 39 69.2
unitig_749.g14226 Utricularia gibba HOM05D000639 ORTHO05D003485 9.4e-07 57.4 41 65.9
BcaC09g51738 Brassica carinata HOM05D000639 ORTHO05D003485 1.2e-06 57.0 33 78.8
Nn8g38916 Nelumbo nucifera HOM05D000639 ORTHO05D003485 2.1e-06 56.2 41 65.9
Lj4A310G27 Lonicera japonica HOM05D000639 ORTHO05D003485 2.7e-06 55.8 41 63.4
SalBow8G1488 Salvia bowleyana HOM05D000639 ORTHO05D003485 2.7e-06 55.8 41 58.5
TAR626G0175 Trochodendron aralioides HOM05D000639 ORTHO05D003485 2.7e-06 55.8 41 61.0
MBI04_g11707_MAGBIO Magnolia biondii HOM05D000639 ORTHO05D003485 4.7e-06 55.1 41 63.4
TAR624G0250 Trochodendron aralioides HOM05D000639 ORTHO05D003485 4.7e-06 55.1 41 63.4
TAR624G1111 Trochodendron aralioides HOM05D000639 ORTHO05D003485 4.7e-06 55.1 41 63.4
Os09g0359800 Oryza sativa ssp. japonica HOM05D000639 ORTHO05D003485 6.1e-06 54.7 41 58.5
Atru.chr7.1543 Acer truncatum HOM05D000639 ORTHO05D003485 8.0e-06 54.3 41 58.5
EL10Ac8g19271 Beta vulgaris HOM05D000639 ORTHO05D003485 8.0e-06 54.3 41 61.0


User provided reference genes

Program Settings