Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g00919 Brassica carinata HOM05D003918 ORTHO05D004494 3.2e-46 188.0 88 100.0
A08p17020 Brassica napus HOM05D003918 ORTHO05D004494 7.8e-45 183.3 89 98.9
C03p85930 Brassica napus HOM05D003918 ORTHO05D004494 1.3e-44 182.6 91 96.7
BraA08t33664Z Brassica rapa HOM05D003918 ORTHO05D004494 3.0e-44 181.4 89 97.8
Sp4g10790 Schrenkiella parvula HOM05D003918 ORTHO05D004494 6.6e-44 180.3 88 95.5
Thhalv10017487m.g Eutrema salsugineum HOM05D003918 ORTHO05D004494 4.3e-43 177.6 88 94.3
BcaB03g11846 Brassica carinata HOM05D003918 ORTHO05D004494 7.3e-43 176.8 89 95.5
Aa31LG5G8120 Aethionema arabicum HOM05D003918 ORTHO05D004494 2.8e-42 174.9 88 92.0
AL4G22250 Arabidopsis lyrata HOM05D003918 ORTHO05D004494 2.8e-42 174.9 88 92.0
AT2G27960 Arabidopsis thaliana HOM05D003918 ORTHO05D004494 3.6e-42 174.5 88 90.9
Haze_03482 Corylus avellana HOM05D003918 ORTHO05D004494 6.2e-42 173.7 89 93.3
PGR119G0927 Punica granatum HOM05D003918 ORTHO05D004494 1.4e-41 172.6 89 92.1
CARHR120670 Cardamine hirsuta HOM05D003918 ORTHO05D004494 1.8e-41 172.2 88 89.8
Eucgr.J00392 Eucalyptus grandis HOM05D003918 ORTHO05D004494 1.8e-41 172.2 89 92.1
Carub.0004s0872 Capsella rubella HOM05D003918 ORTHO05D004494 2.4e-41 171.8 88 90.9
Duzib168G2331 Durio zibethinus HOM05D003918 ORTHO05D004494 2.4e-41 171.8 89 91.0
QL01p014884 Quercus lobata HOM05D003918 ORTHO05D004494 2.4e-41 171.8 88 92.0
Aqoxy1G01058 Aquilegia oxysepala HOM05D003918 ORTHO05D004494 3.1e-41 171.4 88 88.6
Ciclev10029696m.g Citrus clementina HOM05D003918 ORTHO05D004494 5.3e-41 170.6 89 91.0
Hund00834 Selenicereus undatus HOM05D003918 ORTHO05D004494 5.3e-41 170.6 86 89.5
CiPaw.13G144800 Carya illinoinensis HOM05D003918 ORTHO05D004494 6.9e-41 170.2 89 91.0
Sopen11g026220 Solanum pennellii HOM05D003918 ORTHO05D004494 6.9e-41 170.2 85 91.8
PGSC0003DMG402000458 Solanum tuberosum HOM05D003918 ORTHO05D004494 6.9e-41 170.2 85 91.8
Nitab4.5_0000173g0230 Nicotiana tabacum HOM05D003918 ORTHO05D004494 9.0e-41 169.9 89 91.0
Manes.04G012300 Manihot esculenta HOM05D003918 ORTHO05D004494 1.2e-40 169.5 89 89.9
Nn2g13876 Nelumbo nucifera HOM05D003918 ORTHO05D004494 1.2e-40 169.5 89 89.9
CAN.G546.56 Capsicum annuum HOM05D003918 ORTHO05D004494 1.5e-40 169.1 85 90.6
CiPaw.14G106800 Carya illinoinensis HOM05D003918 ORTHO05D004494 2.0e-40 168.7 89 89.9
COL.COLO4_19215 Corchorus olitorius HOM05D003918 ORTHO05D004494 2.0e-40 168.7 86 88.4
Gohir.A05G085800 Gossypium hirsutum HOM05D003918 ORTHO05D004494 2.0e-40 168.7 89 89.9
Gohir.D05G087700 Gossypium hirsutum HOM05D003918 ORTHO05D004494 2.0e-40 168.7 89 89.9
Gorai.009G089700 Gossypium raimondii HOM05D003918 ORTHO05D004494 2.0e-40 168.7 89 89.9
Prupe.6G113800 Prunus persica HOM05D003918 ORTHO05D004494 2.0e-40 168.7 88 89.8
Sc21g0004490 Simmondsia chinensis HOM05D003918 ORTHO05D004494 2.0e-40 168.7 89 89.9
TWI79G0503 Tripterygium wilfordii HOM05D003918 ORTHO05D004494 2.0e-40 168.7 89 89.9
TWI79G0939 Tripterygium wilfordii HOM05D003918 ORTHO05D004494 2.0e-40 168.7 89 89.9
CSS0025262 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 2.6e-40 168.3 86 90.7
CSS0028017 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 2.6e-40 168.3 86 90.7
Cc01_g10200 Coffea canephora HOM05D003918 ORTHO05D004494 2.6e-40 168.3 89 89.9
Hma1.2p1_0051F.1_g029570 Hydrangea macrophylla HOM05D003918 ORTHO05D004494 2.6e-40 168.3 89 89.9
Oeu008363.1 Olea europaea HOM05D003918 ORTHO05D004494 2.6e-40 168.3 88 88.6
Sed0005005 Sechium edule HOM05D003918 ORTHO05D004494 2.6e-40 168.3 86 93.0
Sed0024739 Sechium edule HOM05D003918 ORTHO05D004494 2.6e-40 168.3 88 88.6
Sc21g0004230 Simmondsia chinensis HOM05D003918 ORTHO05D004494 2.6e-40 168.3 88 89.8
Thecc.09G297000 Theobroma cacao HOM05D003918 ORTHO05D004494 2.6e-40 168.3 89 89.9
TWI31G0950 Tripterygium wilfordii HOM05D003918 ORTHO05D004494 2.6e-40 168.3 89 91.0
Peaxi162Scf00983g00019 Petunia axillaris HOM05D003918 ORTHO05D004494 3.4e-40 167.9 89 89.9
CANSAT64G2716 Cannabis sativa HOM05D003918 ORTHO05D004494 4.5e-40 167.5 81 93.8
ClCG01G013880 Citrullus lanatus HOM05D003918 ORTHO05D004494 4.5e-40 167.5 89 88.8
Thhalv10017678m.g Eutrema salsugineum HOM05D003918 ORTHO05D004494 5.8e-40 167.2 88 89.8
Lj1A213T32 Lonicera japonica HOM05D003918 ORTHO05D004494 5.8e-40 167.2 85 89.4
CSS0003214 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 7.6e-40 166.8 85 88.2
CSS0049251 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 7.6e-40 166.8 85 88.2
Haze_23526 Corylus avellana HOM05D001217 ORTHO05D001097 7.6e-40 166.8 88 90.9
Glyma.11G192100 Glycine max HOM05D003918 ORTHO05D004494 7.6e-40 166.8 82 92.7
Glyma.12G082300 Glycine max HOM05D003918 ORTHO05D004494 7.6e-40 166.8 82 92.7
Lj3g0024072 Lotus japonicus HOM05D003918 ORTHO05D004494 7.6e-40 166.8 82 92.7
Oeu007724.1 Olea europaea HOM05D003918 ORTHO05D004494 7.6e-40 166.8 82 92.7
Phvul.011G086900 Phaseolus vulgaris HOM05D003918 ORTHO05D004494 7.6e-40 166.8 82 92.7
Potri.009G004000 Populus trichocarpa HOM05D003918 ORTHO05D004494 7.6e-40 166.8 88 90.9
Sabra09G0001700 Salix brachista HOM05D003918 ORTHO05D004494 7.6e-40 166.8 88 89.8
TAR633G2652 Trochodendron aralioides HOM05D003918 ORTHO05D004494 7.6e-40 166.8 89 88.8
Dinv16240 Davidia involucrata HOM05D003918 ORTHO05D004494 9.9e-40 166.4 90 87.8
FvH4_3g30520 Fragaria vesca HOM05D003918 ORTHO05D004494 9.9e-40 166.4 88 89.8
FAN11G2739 Fragaria x ananassa HOM05D003918 ORTHO05D004494 9.9e-40 166.4 88 89.8
FAN21G0274 Fragaria x ananassa HOM05D003918 ORTHO05D004494 9.9e-40 166.4 88 89.8
Gohir.A07G105200 Gossypium hirsutum HOM05D003918 ORTHO05D004494 9.9e-40 166.4 89 88.8
Gohir.D07G109300 Gossypium hirsutum HOM05D003918 ORTHO05D004494 9.9e-40 166.4 89 88.8
Gorai.001G117400 Gossypium raimondii HOM05D003918 ORTHO05D004494 9.9e-40 166.4 89 88.8
AUR62041324 Chenopodium quinoa HOM05D003918 ORTHO05D004494 1.3e-39 166.0 88 85.2
ClCG02G021690 Citrullus lanatus HOM05D003918 ORTHO05D004494 1.3e-39 166.0 87 90.8
Rhsim01G0210200 Rhododendron simsii HOM05D003918 ORTHO05D004494 1.3e-39 166.0 85 89.4
Rhsim13G0101600 Rhododendron simsii HOM05D003918 ORTHO05D004494 1.3e-39 166.0 82 91.5
TAR369G0366 Trochodendron aralioides HOM05D003918 ORTHO05D004494 1.3e-39 166.0 89 88.8
Zm00001eb402980 Zea mays HOM05D003918 ORTHO05D004494 1.3e-39 166.0 88 87.5
Ca_10762_v3 Cicer arietinum L. HOM05D003918 ORTHO05D004494 1.7e-39 165.6 82 91.5
MD03G1128000 Malus domestica HOM05D003918 ORTHO05D004494 1.7e-39 165.6 89 89.9
MD11G1149400 Malus domestica HOM05D003918 ORTHO05D004494 1.7e-39 165.6 89 89.9
Medtr4g057040 Medicago truncatula HOM05D003918 ORTHO05D004494 1.7e-39 165.6 82 91.5
EL10Ac9g21015 Beta vulgaris HOM05D003918 ORTHO05D004494 2.2e-39 165.2 88 86.4
Cpa.g.sc47.8 Carica papaya HOM05D003918 ORTHO05D004494 2.2e-39 165.2 89 88.8
HanXRQChr11g0346091 Helianthus annuus HOM05D003918 ORTHO05D004494 2.2e-39 165.2 91 86.8
RcHm_v2.0_Chr5g0056481 Rosa chinensis HOM05D003918 ORTHO05D004494 2.2e-39 165.2 88 88.6
GSVIVG01031454001 Vitis vinifera HOM05D003918 ORTHO05D004494 2.2e-39 165.2 89 88.8
CAN.G246.3 Capsicum annuum HOM05D003918 ORTHO05D004494 2.9e-39 164.9 85 87.1
Dinv29385 Davidia involucrata HOM05D003918 ORTHO05D004494 2.9e-39 164.9 90 86.7
Oeu000602.1 Olea europaea HOM05D003918 ORTHO05D004494 2.9e-39 164.9 88 85.2
TAR623G0966 Trochodendron aralioides HOM05D003918 ORTHO05D004494 2.9e-39 164.9 90 87.8
HPP92_026243 Vanilla planifolia HOM05D003918 ORTHO05D004494 2.9e-39 164.9 87 86.2
MELO3C026958.2 Cucumis melo HOM05D003918 ORTHO05D004494 4.9e-39 164.1 87 88.5
Manes.11G152900 Manihot esculenta HOM05D003918 ORTHO05D004494 4.9e-39 164.1 81 91.4
Oeu040442.1 Olea europaea HOM05D003918 ORTHO05D004494 4.9e-39 164.1 89 86.5
PGSC0003DMG400018822 Solanum tuberosum HOM05D003918 ORTHO05D004494 4.9e-39 164.1 85 89.4
unitig_899.g14962 Utricularia gibba HOM05D003918 ORTHO05D004494 4.9e-39 164.1 89 87.6
CsaV3_1G014150 Cucumis sativus L. HOM05D003918 ORTHO05D004494 6.4e-39 163.7 89 87.6
Lalb_Chr01g0004631 Lupinus albus HOM05D003918 ORTHO05D004494 6.4e-39 163.7 82 91.5
Psat0ss2518g0280 Pisum sativum HOM05D003918 ORTHO05D004494 6.4e-39 163.7 82 90.2
vmacro03250 Vaccinium macrocarpon HOM05D003918 ORTHO05D004494 6.4e-39 163.7 82 90.2
HanXRQChr01g0019451 Helianthus annuus HOM05D003918 ORTHO05D004494 8.4e-39 163.3 91 85.7
Actinidia07191 Actinidia chinensis HOM05D001217 ORTHO05D004494 1.1e-38 162.9 81 91.4
FAN25G0673 Fragaria x ananassa HOM05D003918 ORTHO05D004494 1.1e-38 162.9 88 88.6
ECA233G3711 Erigeron canadensis HOM05D003918 ORTHO05D004494 1.4e-38 162.5 85 87.1
Lsat_1_v5_gn_1_64981 Lactuca sativa HOM05D003918 ORTHO05D004494 1.4e-38 162.5 82 90.2
SalBow6G1569 Salvia bowleyana HOM05D003918 ORTHO05D004494 1.4e-38 162.5 82 90.2
THA.LOC104815736 Tarenaya hassleriana HOM05D003918 ORTHO05D004494 1.4e-38 162.5 88 85.2
ECA248G3596 Erigeron canadensis HOM05D003918 ORTHO05D004494 1.9e-38 162.2 83 89.2
MBI17_g16530_MAGBIO Magnolia biondii HOM05D003918 ORTHO05D004494 1.9e-38 162.2 87 83.9
DCAR_018757 Daucus carota HOM05D003918 ORTHO05D004494 2.4e-38 161.8 82 90.2
THA.LOC104826394 Tarenaya hassleriana HOM05D003918 ORTHO05D004494 2.4e-38 161.8 89 87.6
Ah.01g016010 Amaranthus hybridus HOM05D003918 ORTHO05D004494 3.2e-38 161.4 89 85.4
CARHR120680 Cardamine hirsuta HOM05D003918 ORTHO05D004494 3.2e-38 161.4 78 92.3
Carub.0004s0873 Capsella rubella HOM05D003918 ORTHO05D004494 4.2e-38 161.0 88 86.4
Migut.D02301 Erythranthe guttata HOM05D003918 ORTHO05D004494 4.2e-38 161.0 82 89.0
Nitab4.5_0003880g0020 Nicotiana tabacum HOM05D003918 ORTHO05D004494 4.2e-38 161.0 87 88.5
CDE09G0194 Ceratophyllum demersum HOM05D003918 ORTHO05D004494 5.4e-38 160.6 86 83.7
PSO339G4781 Papaver somniferum HOM05D003918 ORTHO05D004494 7.1e-38 160.2 86 83.7
FAN16G1510 Fragaria x ananassa HOM05D003918 ORTHO05D004494 9.3e-38 159.8 94 84.0
DCAR_015501 Daucus carota HOM05D003918 ORTHO05D004494 1.2e-37 159.5 82 90.2
Oeu007309.2 Olea europaea HOM05D003918 ORTHO05D004494 1.2e-37 159.5 90 85.6
Eucgr.B03920 Eucalyptus grandis HOM05D003918 ORTHO05D004494 1.6e-37 159.1 87 87.4
Lalb_Chr03g0027731 Lupinus albus HOM05D003918 ORTHO05D004494 3.5e-37 157.9 84 88.1
AL4G22230 Arabidopsis lyrata HOM05D003918 ORTHO05D004494 6.0e-37 157.1 78 89.7
AT2G27970 Arabidopsis thaliana HOM05D003918 ORTHO05D004494 6.0e-37 157.1 78 89.7
PSO801G0480 Papaver somniferum HOM05D003918 ORTHO05D004494 1.0e-36 156.4 82 84.1
ATR0043G026 Amborella trichopoda HOM05D003918 ORTHO05D004494 1.3e-36 156.0 82 85.4
Lsat_1_v5_gn_6_43541 Lactuca sativa HOM05D003918 ORTHO05D004494 1.3e-36 156.0 81 86.4
SEGI_17224 Sequoiadendron giganteum HOM05D003918 ORTHO05D004494 1.8e-36 155.6 78 89.7
Potri.004G217500 Populus trichocarpa HOM05D003918 ORTHO05D004494 2.3e-36 155.2 78 91.0
Os03g0146300 Oryza sativa ssp. japonica HOM05D003918 ORTHO05D004494 3.9e-36 154.5 75 92.0
BcaB06g28178 Brassica carinata HOM05D003918 ORTHO05D004494 8.7e-36 153.3 74 90.5
MELO3C004864.2 Cucumis melo HOM05D003918 ORTHO05D004494 8.7e-36 153.3 92 80.4
Hma1.2p1_0772F.1_g215980 Hydrangea macrophylla HOM05D003918 ORTHO05D004494 8.7e-36 153.3 98 76.5
PSO339G2710 Papaver somniferum HOM05D003918 ORTHO05D004494 1.1e-35 152.9 76 88.2
PGR102G3373 Punica granatum HOM05D003918 ORTHO05D004494 1.9e-35 152.1 76 90.8
SEGI_19027 Sequoiadendron giganteum HOM05D003918 ORTHO05D004494 4.3e-35 151.0 78 85.9
Lalb_Chr19g0136871 Lupinus albus HOM05D003918 ORTHO05D004494 7.4e-35 150.2 75 90.7
SalBow3G4245 Salvia bowleyana HOM05D003918 ORTHO05D004494 9.6e-35 149.8 77 88.3
BcaC02g08219 Brassica carinata HOM05D003918 ORTHO05D004494 1.3e-34 149.4 74 87.8
A04p21230 Brassica napus HOM05D003918 ORTHO05D004494 1.3e-34 149.4 74 87.8
C04p57080 Brassica napus HOM05D003918 ORTHO05D004494 1.3e-34 149.4 74 87.8
BolC4t27242H Brassica oleracea HOM05D003918 ORTHO05D004494 1.3e-34 149.4 74 87.8
Pp3c14_11680 Physcomitrium patens HOM05D003918 ORTHO05D004494 2.1e-34 148.7 78 87.2
Pp3c2_6200 Physcomitrium patens HOM05D003918 ORTHO05D004494 2.1e-34 148.7 78 87.2
Glyma.12G083700 Glycine max HOM05D003918 ORTHO05D004494 3.7e-34 147.9 83 85.5
SMO116G0276 Selaginella moellendorffii HOM05D003918 ORTHO05D004494 3.7e-34 147.9 84 77.4
Zm00001eb003750 Zea mays HOM05D003918 ORTHO05D004494 4.8e-34 147.5 89 77.5
Phvul.011G088400 Phaseolus vulgaris HOM05D003918 ORTHO05D004494 1.8e-33 145.6 83 79.5
Mapoly0001s0011 Marchantia polymorpha HOM05D003918 ORTHO05D004494 4.0e-33 144.4 86 79.1
PRCOL_00005401 Prasinoderma coloniale HOM05D003918 ORTHO05D004494 1.1e-30 136.3 78 76.9
Cre03.g180350 Chlamydomonas reinhardtii HOM05D003918 ORTHO05D004494 9.3e-30 133.3 70 82.9
CDE02G4651 Ceratophyllum demersum HOM05D003918 ORTHO05D004494 2.1e-29 132.1 86 75.6
MCO11G605 Micromonas commoda HOM05D003918 ORTHO05D004494 6.0e-29 130.6 68 83.8
CsaV3_6G014430 Cucumis sativus L. HOM05D003918 ORTHO05D004494 1.1e-27 126.3 70 85.7
MBI16_g13165_MAGBIO Magnolia biondii HOM05D003918 ORTHO05D004494 2.5e-27 125.2 91 64.8
SMO367G0337 Selaginella moellendorffii HOM05D003918 ORTHO05D004494 5.6e-27 124.0 69 76.8
Zm00001eb012500 Zea mays HOM05D003918 ORTHO05D004494 9.6e-27 123.2 60 91.7
SEGI_02290 Sequoiadendron giganteum HOM05D003918 ORTHO05D004494 2.1e-26 122.1 64 85.9
CBR_g2791 Chara braunii HOM05D003918 ORTHO05D004494 6.9e-25 117.1 60 86.7
MBI11_g44590_MAGBIO Magnolia biondii HOM05D003918 ORTHO05D004494 1.1e-22 109.8 63 77.8
BcaB02g10127 Brassica carinata HOM05D003918 ORTHO05D004494 2.7e-21 105.1 77 63.6
Actinidia24153 Actinidia chinensis HOM05D003918 ORTHO05D004494 6.7e-20 100.5 55 83.6
TPR.G31695 Trifolium pratense HOM05D003918 ORTHO05D004494 1.5e-19 99.4 48 91.7
Actinidia03687 Actinidia chinensis HOM05D003918 ORTHO05D004494 1.3e-15 86.3 44 84.1
ATR0760G002 Amborella trichopoda HOM05D003918 ORTHO05D004494 6.5e-15 84.0 53 81.1
Thecc.08G095400 Theobroma cacao HOM05D003918 ORTHO05D004494 6.5e-15 84.0 63 65.1
Zm00001eb191010 Zea mays HOM05D003918 ORTHO05D004494 8.5e-15 83.6 87 50.6
AagrBONN_evm.TU.Sc2ySwM_117.701 Anthoceros agrestis HOM05D005424 ORTHO05D006726 9.4e-14 80.1 46 76.1
BcaC05g28675 Brassica carinata HOM05D003918 ORTHO05D004494 1.2e-13 79.7 39 84.6
BolC5t33525H Brassica oleracea HOM05D003918 ORTHO05D004494 1.2e-13 79.7 39 84.6
Nn2g10486 Nelumbo nucifera HOM05D003918 ORTHO05D004494 3.6e-13 78.2 38 89.5
Nn6g35195 Nelumbo nucifera HOM05D003918 ORTHO05D004494 2.3e-12 75.5 37 89.2
CSS0049200 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 3.0e-12 75.1 39 82.1
Migut.N02540 Erythranthe guttata HOM05D003918 ORTHO05D004494 3.9e-12 74.7 47 74.5
CSS0021242 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 6.7e-12 73.9 67 58.2
SGA_v2.0_scaffold50G18575 Striga asiatica HOM05D003918 ORTHO05D004494 8.8e-12 73.6 53 66.0
Ah.03g143830 Amaranthus hybridus HOM05D003918 ORTHO05D004494 4.8e-10 67.8 38 81.6
Gohir.A02G090001 Gossypium hirsutum HOM05D003918 ORTHO05D004494 3.1e-09 65.1 38 76.3
Nn4g23314 Nelumbo nucifera HOM05D003918 ORTHO05D004494 9.1e-09 63.5 29 89.7
Nn1g02037 Nelumbo nucifera HOM05D003918 ORTHO05D004494 1.2e-08 63.2 51 54.9
Ah.09g226860 Amaranthus hybridus HOM05D003918 ORTHO05D004494 6.5e-07 57.4 38 73.7


User provided reference genes

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