Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g00891 Brassica carinata HOM05D004667 ORTHO05D005522 7.7e-49 196.8 99 100.0
BolC3t18707H Brassica oleracea HOM05D004667 ORTHO05D005522 4.0e-45 184.5 99 93.9
C08p25720 Brassica napus HOM05D004667 ORTHO05D005522 1.7e-32 142.5 99 77.8
BolC8t50187H Brassica oleracea HOM05D004667 ORTHO05D005522 8.6e-32 140.2 97 77.3
BraA03t15338Z Brassica rapa HOM05D004667 ORTHO05D005522 2.8e-30 135.2 99 73.7
BcaC01g02459 Brassica carinata HOM05D004667 ORTHO05D005522 2.2e-27 125.6 64 96.9
Thhalv10010670m.g Eutrema salsugineum HOM05D004667 ORTHO05D005522 6.4e-27 124.0 76 81.6
BcaB02g10693 Brassica carinata HOM05D004667 ORTHO05D005522 8.3e-27 123.6 79 82.3
Sp5g14280 Schrenkiella parvula HOM05D004667 ORTHO05D005522 1.4e-26 122.9 76 80.3
Carub.0005s1377 Capsella rubella HOM05D004667 ORTHO05D005522 3.2e-26 121.7 77 77.9
AL5G26930 Arabidopsis lyrata HOM05D004667 ORTHO05D005522 5.4e-26 120.9 79 78.5
AT3G47640 Arabidopsis thaliana HOM05D004667 ORTHO05D005522 9.2e-26 120.2 76 78.9
Aa31LG4G16380 Aethionema arabicum HOM05D004667 ORTHO05D005522 5.9e-25 117.5 78 74.4
BcaC01g02286 Brassica carinata HOM05D004667 ORTHO05D005522 5.9e-25 117.5 72 83.3
A06p27240 Brassica napus HOM05D004667 ORTHO05D005522 5.9e-25 117.5 72 83.3
C03p67020 Brassica napus HOM05D004667 ORTHO05D005522 5.9e-25 117.5 72 83.3
BolC3t18977H Brassica oleracea HOM05D004667 ORTHO05D005522 5.9e-25 117.5 72 83.3
BraA06t25665Z Brassica rapa HOM05D004667 ORTHO05D005522 5.9e-25 117.5 72 83.3
BcaB05g23064 Brassica carinata HOM05D004667 ORTHO05D005522 1.7e-24 115.9 74 79.7
C01p32730 Brassica napus HOM05D004667 ORTHO05D005522 2.3e-24 115.5 74 78.4
BraA01t02497Z Brassica rapa HOM05D004667 ORTHO05D005522 2.3e-24 115.5 74 78.4
A01p25820 Brassica napus HOM05D004667 ORTHO05D005522 2.5e-23 112.1 74 77.0
BolC1t03209H Brassica oleracea HOM05D004667 ORTHO05D005522 4.3e-23 111.3 72 77.8
Thecc.03G084200 Theobroma cacao HOM05D004667 ORTHO05D005522 5.6e-23 110.9 87 59.8
CARHR156320 Cardamine hirsuta HOM05D004667 ORTHO05D005522 9.5e-23 110.2 72 76.4
Duzib205G0185 Durio zibethinus HOM05D004667 ORTHO05D005522 1.2e-22 109.8 87 62.1
QL10p016532 Quercus lobata HOM05D004667 ORTHO05D005522 1.2e-22 109.8 87 62.1
RcHm_v2.0_Chr7g0181001 Rosa chinensis HOM05D004667 ORTHO05D005522 2.1e-22 109.0 84 60.7
FAN08G0134 Fragaria x ananassa HOM05D004667 ORTHO05D005522 2.8e-22 108.6 84 61.9
Duzib084G1199 Durio zibethinus HOM05D004667 ORTHO05D005522 3.6e-22 108.2 89 58.4
Gohir.A11G030611 Gossypium hirsutum HOM05D004667 ORTHO05D005522 4.7e-22 107.8 87 58.6
Gohir.D11G033900 Gossypium hirsutum HOM05D004667 ORTHO05D005522 4.7e-22 107.8 87 58.6
Gorai.007G036700 Gossypium raimondii HOM05D004667 ORTHO05D005522 4.7e-22 107.8 87 58.6
Haze_07341 Corylus avellana HOM05D005938 ORTHO05D007654 1.1e-21 106.7 84 63.1
Eucgr.B00470 Eucalyptus grandis HOM05D004667 ORTHO05D005522 1.1e-21 106.7 87 59.8
FvH4_5g15171 Fragaria vesca HOM05D004667 ORTHO05D005522 1.1e-21 106.7 84 60.7
Prupe.5G190100 Prunus persica HOM05D004667 ORTHO05D005522 1.4e-21 106.3 87 59.8
Lj4g0024645 Lotus japonicus HOM05D004667 ORTHO05D005522 2.3e-21 105.5 89 56.2
Ca_21829_v3 Cicer arietinum L. HOM05D004667 ORTHO05D005522 4.0e-21 104.8 89 57.3
COL.COLO4_24543 Corchorus olitorius HOM05D004667 ORTHO05D005522 5.2e-21 104.4 87 58.6
MD06G1191600 Malus domestica HOM05D004667 ORTHO05D005522 1.2e-20 103.2 88 59.1
Hma1.2p1_0735F.1_g210470 Hydrangea macrophylla HOM05D004667 ORTHO05D005522 1.5e-20 102.8 87 60.9
PGR083G2477 Punica granatum HOM05D004667 ORTHO05D005522 1.5e-20 102.8 92 57.6
Psat4g051040 Pisum sativum HOM05D004667 ORTHO05D005522 2.0e-20 102.4 89 57.3
Cpa.g.c30141.2 Carica papaya HOM05D004667 ORTHO05D005522 5.8e-20 100.9 87 56.3
TPR.G34729 Trifolium pratense HOM05D004667 ORTHO05D005522 5.8e-20 100.9 87 56.3
TWI60G0935 Tripterygium wilfordii HOM05D004667 ORTHO05D005522 5.8e-20 100.9 87 55.2
VMungo1215G1912 Vigna mungo HOM05D004667 ORTHO05D005522 5.8e-20 100.9 89 57.3
ClCG06G016270 Citrullus lanatus HOM05D004667 ORTHO05D005522 1.3e-19 99.8 82 57.3
Atru.chr9.2269 Acer truncatum HOM05D004667 ORTHO05D005522 1.7e-19 99.4 76 65.8
Manes.06G094100 Manihot esculenta HOM05D004667 ORTHO05D005522 1.7e-19 99.4 87 57.5
Potri.015G142700 Populus trichocarpa HOM05D004667 ORTHO05D005522 1.7e-19 99.4 87 55.2
Potri.003G074400 Populus trichocarpa HOM05D004667 ORTHO05D005522 2.2e-19 99.0 84 58.3
TWI15G0884 Tripterygium wilfordii HOM05D004667 ORTHO05D005522 2.2e-19 99.0 87 54.0
Lalb_Chr13g0303301 Lupinus albus HOM05D004667 ORTHO05D005522 2.9e-19 98.6 87 55.2
Duzib068G0725 Durio zibethinus HOM05D004667 ORTHO05D005522 3.7e-19 98.2 80 60.0
Cfa018960 Carpinus fangiana HOM05D004667 ORTHO05D005522 4.9e-19 97.8 79 62.0
Ciclev10021941m.g Citrus clementina HOM05D004667 ORTHO05D005522 4.9e-19 97.8 89 53.9
Lj5C112T10 Lonicera japonica HOM05D004667 ORTHO05D005522 6.4e-19 97.4 87 55.2
Medtr4g108360 Medicago truncatula HOM05D004667 ORTHO05D005522 6.4e-19 97.4 90 53.3
arahy.Tifrunner.gnm1.ann1.0RV7R4 Arachis hypogaea HOM05D004667 ORTHO05D005522 8.3e-19 97.1 89 55.1
Dinv38692 Davidia involucrata HOM05D004667 ORTHO05D005522 8.3e-19 97.1 87 55.2
MD14G1198000 Malus domestica HOM05D004667 ORTHO05D005522 8.3e-19 97.1 88 55.7
MSTRG.4419 Avicennia marina HOM05D004667 ORTHO05D005522 1.1e-18 96.7 86 54.7
Actinidia37637 Actinidia chinensis HOM05D004667 ORTHO05D005522 1.9e-18 95.9 87 54.0
MELO3C017166.2 Cucumis melo HOM05D004667 ORTHO05D005522 1.9e-18 95.9 82 56.1
Dinv19946 Davidia involucrata HOM05D004667 ORTHO05D005522 1.9e-18 95.9 87 55.2
Phvul.003G191000 Phaseolus vulgaris HOM05D004667 ORTHO05D005522 1.9e-18 95.9 89 52.8
Sed0008118 Sechium edule HOM05D004667 ORTHO05D005522 1.9e-18 95.9 82 58.5
Lalb_Chr07g0177971 Lupinus albus HOM05D004667 ORTHO05D005522 2.4e-18 95.5 84 53.6
Sabra03G0045100 Salix brachista HOM05D004667 ORTHO05D005522 2.4e-18 95.5 84 57.1
vmacro17553 Vaccinium macrocarpon HOM05D004667 ORTHO05D005522 2.4e-18 95.5 88 54.5
ECA246G3018 Erigeron canadensis HOM05D004667 ORTHO05D005522 3.2e-18 95.1 83 57.8
CANSAT80G1185 Cannabis sativa HOM05D004667 ORTHO05D005522 4.1e-18 94.7 85 54.1
Glyma.17G098900 Glycine max HOM05D004667 ORTHO05D005522 4.1e-18 94.7 89 51.7
arahy.Tifrunner.gnm1.ann1.U816VA Arachis hypogaea HOM05D004667 ORTHO05D005522 5.4e-18 94.4 82 57.3
CsaV3_1G002260 Cucumis sativus L. HOM05D004667 ORTHO05D005522 9.2e-18 93.6 82 54.9
Sabra15G0152700 Salix brachista HOM05D004667 ORTHO05D005522 9.2e-18 93.6 85 56.5
HanXRQChr05g0158091 Helianthus annuus HOM05D004667 ORTHO05D005522 2.0e-17 92.4 82 57.3
Manes.14G077100 Manihot esculenta HOM05D004667 ORTHO05D005522 2.0e-17 92.4 96 51.0
Glyma.05G027600 Glycine max HOM05D004667 ORTHO05D005522 2.7e-17 92.0 89 50.6
Sed0021322 Sechium edule HOM05D004667 ORTHO05D005522 2.7e-17 92.0 84 53.6
Actinidia04904 Actinidia chinensis HOM05D004667 ORTHO05D005522 3.5e-17 91.7 85 55.3
Lsat_1_v5_gn_5_19381 Lactuca sativa HOM05D000189 ORTHO05D000474 3.5e-17 91.7 83 54.2
GSVIVG01008025001 Vitis vinifera HOM05D004667 ORTHO05D005522 3.5e-17 91.7 91 47.3
Nitab4.5_0000026g0120 Nicotiana tabacum HOM05D004667 ORTHO05D005522 7.8e-17 90.5 85 50.6
Sc04g0002550 Simmondsia chinensis HOM05D004667 ORTHO05D005522 7.8e-17 90.5 85 52.9
Rhsim08G0156600 Rhododendron simsii HOM05D004667 ORTHO05D005522 1.0e-16 90.1 88 52.3
CiPaw.11G042700 Carya illinoinensis HOM05D004667 ORTHO05D005522 1.3e-16 89.7 77 57.1
THA.LOC104818253 Tarenaya hassleriana HOM05D004667 ORTHO05D005522 2.3e-16 89.0 62 69.4
Nn3g17203 Nelumbo nucifera HOM05D004667 ORTHO05D005522 3.0e-16 88.6 86 51.2
Nn4g23126 Nelumbo nucifera HOM05D004667 ORTHO05D005522 3.0e-16 88.6 94 47.9
Aqoxy3G03350 Aquilegia oxysepala HOM05D004667 ORTHO05D005522 3.9e-16 88.2 85 48.2
Nitab4.5_0000741g0010 Nicotiana tabacum HOM05D004667 ORTHO05D005522 5.0e-16 87.8 85 49.4
Migut.D01831 Erythranthe guttata HOM05D004667 ORTHO05D005522 6.6e-16 87.4 86 53.5
CSS0005857 Camellia sinensis var. sinensis HOM05D004667 ORTHO05D005522 1.5e-15 86.3 87 51.7
HPP92_006020 Vanilla planifolia HOM05D004366 ORTHO05D005058 1.5e-15 86.3 95 46.3
GSVIVG01011386001 Vitis vinifera HOM05D004667 ORTHO05D005522 2.5e-15 85.5 92 47.8
TAR371G0790 Trochodendron aralioides HOM05D004667 ORTHO05D005522 4.3e-15 84.7 85 45.9
PSO063G1198 Papaver somniferum HOM05D004667 ORTHO05D005522 7.3e-15 84.0 85 47.1
Actinidia17543 Actinidia chinensis HOM05D004667 ORTHO05D005522 9.5e-15 83.6 85 48.2
CDE05G0260 Ceratophyllum demersum HOM05D004667 ORTHO05D005522 9.5e-15 83.6 92 48.9
PSO832G1839 Papaver somniferum HOM05D004667 ORTHO05D005522 1.2e-14 83.2 85 47.1
Phvul.009G188251 Phaseolus vulgaris HOM05D004667 ORTHO05D005522 1.2e-14 83.2 88 50.0
Peaxi162Scf00712g00029 Petunia axillaris HOM05D004667 ORTHO05D005522 1.6e-14 82.8 82 48.8
VMungo1309G0024 Vigna mungo HOM05D004667 ORTHO05D005522 2.8e-14 82.0 91 48.4
BolC9t55593H Brassica oleracea HOM05D004667 ORTHO05D005522 3.6e-14 81.6 62 72.6
CDE05G2553 Ceratophyllum demersum HOM05D004667 ORTHO05D005522 3.6e-14 81.6 92 47.8
MSTRG.3233 Avicennia marina HOM05D004667 ORTHO05D005522 1.1e-13 80.1 82 45.1
Ah.08g216800 Amaranthus hybridus HOM05D004667 ORTHO05D005522 1.8e-13 79.3 85 49.4
TAR629G0869 Trochodendron aralioides HOM05D000350 ORTHO05D005522 1.8e-13 79.3 85 43.5
Os11g0601700 Oryza sativa ssp. japonica HOM05D004667 ORTHO05D005522 3.1e-13 78.6 89 42.7
MBI02_g23680_MAGBIO Magnolia biondii HOM05D004667 ORTHO05D005522 4.0e-13 78.2 85 43.5
vmacro18196 Vaccinium macrocarpon HOM05D004667 ORTHO05D005522 4.0e-13 78.2 88 43.2
Rhsim08G0068600 Rhododendron simsii HOM05D004667 ORTHO05D005522 5.2e-13 77.8 88 43.2
Cc04_g16930 Coffea canephora HOM05D004667 ORTHO05D005522 6.8e-13 77.4 62 58.1
Actinidia02716 Actinidia chinensis HOM05D004667 ORTHO05D005522 1.2e-12 76.6 82 45.1
AUR62001482 Chenopodium quinoa HOM05D004667 ORTHO05D005522 1.2e-12 76.6 88 45.5
AUR62009884 Chenopodium quinoa HOM05D004667 ORTHO05D005522 1.2e-12 76.6 88 45.5
CAN.G407.116 Capsicum annuum HOM05D004667 ORTHO05D005522 1.5e-12 76.3 68 57.4
Migut.H00911 Erythranthe guttata HOM05D004667 ORTHO05D005522 2.6e-12 75.5 81 42.0
PGSC0003DMG400000599 Solanum tuberosum HOM05D004667 ORTHO05D005522 2.6e-12 75.5 69 55.1
ATR0564G258 Amborella trichopoda HOM05D004667 ORTHO05D005522 3.4e-12 75.1 87 37.9
Hma1.2p1_0449F.1_g155390 Hydrangea macrophylla HOM05D004667 ORTHO05D005522 3.4e-12 75.1 88 40.9
Nitab4.5_0014986g0010 Nicotiana tabacum HOM05D004667 ORTHO05D005522 3.4e-12 75.1 68 54.4
Os07g0628500 Oryza sativa ssp. japonica HOM05D004667 ORTHO05D005522 4.4e-12 74.7 89 43.8
Nitab4.5_0002257g0120 Nicotiana tabacum HOM05D004667 ORTHO05D005522 7.5e-12 73.9 68 52.9
Solyc03g116340.3 Solanum lycopersicum HOM05D004667 ORTHO05D005522 7.5e-12 73.9 68 54.4
Sopen03g035270 Solanum pennellii HOM05D004667 ORTHO05D005522 7.5e-12 73.9 68 54.4
Zm00001eb018460 Zea mays HOM05D004667 ORTHO05D005522 7.5e-12 73.9 83 41.0
MSTRG.23944 Avicennia marina HOM05D004667 ORTHO05D005522 9.9e-12 73.6 82 41.5
Lsat_1_v5_gn_4_178121 Lactuca sativa HOM05D004667 ORTHO05D005522 9.9e-12 73.6 87 39.1
Peaxi162Scf00274g00834 Petunia axillaris HOM05D004667 ORTHO05D005522 9.9e-12 73.6 71 54.9
SalBow1G0094 Salvia bowleyana HOM05D004667 ORTHO05D005522 1.7e-11 72.8 82 41.5
EL10Ac7g16410 Beta vulgaris HOM05D004667 ORTHO05D005522 6.4e-11 70.9 72 52.8
ECA232G3869 Erigeron canadensis HOM05D004667 ORTHO05D005522 6.4e-11 70.9 85 41.2
Cc07_g03280 Coffea canephora HOM05D004667 ORTHO05D005522 8.3e-11 70.5 94 37.2
BolC4t22656H Brassica oleracea HOM05D004667 ORTHO05D005522 1.4e-10 69.7 56 71.4
Oeu016168.2 Olea europaea HOM05D004667 ORTHO05D005522 2.4e-10 68.9 69 47.8
Os03g0379300 Oryza sativa ssp. japonica HOM05D004667 ORTHO05D005522 7.1e-10 67.4 74 40.5
DCAR_011136 Daucus carota HOM05D004667 ORTHO05D005522 1.2e-09 66.6 81 40.7
SGA_v2.0_scaffold59G20685 Striga asiatica HOM05D004667 ORTHO05D005522 1.2e-09 66.6 83 34.9
Oeu022621.1 Olea europaea HOM05D004667 ORTHO05D005522 1.6e-09 66.2 69 47.8
Hund02659 Selenicereus undatus HOM05D004667 ORTHO05D005522 7.8e-09 63.9 111 35.1
Lsat_1_v5_gn_4_108900 Lactuca sativa HOM05D000650 ORTHO05D000735 2.3e-08 62.4 66 43.9
BcaC09g49811 Brassica carinata HOM05D004667 ORTHO05D005522 3.0e-08 62.0 40 72.5
HanXRQChr09g0265291 Helianthus annuus HOM05D004667 ORTHO05D005522 3.3e-07 58.5 85 35.3
DCAR_021526 Daucus carota HOM05D004667 ORTHO05D005522 5.6e-07 57.8 62 46.8
BolC3t19479H Brassica oleracea HOM05D004667 ORTHO05D005522 9.5e-07 57.0 40 67.5
CDE09G1261 Ceratophyllum demersum HOM05D004667 ORTHO05D005522 3.6e-06 55.1 65 38.5
Oeu021379.1 Olea europaea HOM05D004667 ORTHO05D005522 8.1e-06 53.9 59 42.4


User provided reference genes

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