Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g00871 Brassica carinata HOM05D003275 ORTHO05D039187 9.9e-85 317.8 327 100.0
C03p85430 Brassica napus HOM05D003275 ORTHO05D039187 2.0e-53 213.8 108 99.1
BolC3t20831H Brassica oleracea HOM05D003275 ORTHO05D003732 2.7e-50 203.4 108 94.4
BolC9t59327H Brassica oleracea HOM05D003275 ORTHO05D003732 3.3e-32 143.3 98 77.6
BraA10t44653Z Brassica rapa HOM05D003275 ORTHO05D003732 2.8e-31 140.2 99 74.7
C09p64990 Brassica napus HOM05D003275 ORTHO05D003732 2.4e-30 137.1 102 72.5
BcaC04g19190 Brassica carinata HOM05D003275 ORTHO05D003732 7.0e-30 135.6 102 72.5
A10p25900 Brassica napus HOM05D003275 ORTHO05D003732 2.6e-29 133.7 95 74.7
Thhalv10014390m.g Eutrema salsugineum HOM05D003275 ORTHO05D003732 3.8e-28 129.8 95 72.6
Sp6g31730 Schrenkiella parvula HOM05D003275 ORTHO05D003732 7.2e-27 125.6 95 69.5
Carub.0006s1040 Capsella rubella HOM05D003275 ORTHO05D003732 9.4e-27 125.2 95 68.4
CARHR201290 Cardamine hirsuta HOM05D003275 ORTHO05D003732 3.6e-26 123.2 102 63.7
AT5G11870 Arabidopsis thaliana HOM05D003275 ORTHO05D003732 1.8e-25 120.9 95 67.4
AL6G22630 Arabidopsis lyrata HOM05D003275 ORTHO05D003732 3.7e-23 113.2 95 64.2
THA.LOC104799163 Tarenaya hassleriana HOM05D003275 ORTHO05D003732 1.2e-21 108.2 94 61.7
Atru.chr7.1081 Acer truncatum HOM05D003275 ORTHO05D003732 1.7e-20 104.4 95 56.8
Aa31LG3G15330 Aethionema arabicum HOM05D003275 ORTHO05D003732 3.8e-20 103.2 96 58.3
Duzib168G2080 Durio zibethinus HOM05D003275 ORTHO05D003732 1.9e-19 100.9 95 56.8
Thecc.09G054400 Theobroma cacao HOM05D003275 ORTHO05D003732 4.2e-19 99.8 95 55.8
Ciclev10009178m.g Citrus clementina HOM05D003275 ORTHO05D003732 7.2e-19 99.0 101 51.5
Gohir.A06G087400 Gossypium hirsutum HOM05D003275 ORTHO05D003732 9.4e-19 98.6 95 55.8
Gorai.010G100200 Gossypium raimondii HOM05D003275 ORTHO05D003732 9.4e-19 98.6 95 55.8
A10p25910 Brassica napus HOM05D003275 ORTHO05D003732 1.6e-18 97.8 73 72.6
Eucgr.C00652 Eucalyptus grandis HOM05D003275 ORTHO05D003732 2.7e-18 97.1 95 54.7
Sabra06G0177100 Salix brachista HOM05D003275 ORTHO05D003732 2.7e-18 97.1 103 51.5
Gohir.D06G086800 Gossypium hirsutum HOM05D003275 ORTHO05D003732 8.0e-18 95.5 95 53.7
TWI34G1634 Tripterygium wilfordii HOM05D003275 ORTHO05D003732 1.8e-17 94.4 103 49.5
Manes.03G048000 Manihot esculenta HOM05D003275 ORTHO05D003732 6.8e-17 92.4 101 47.5
Haze_18178 Corylus avellana HOM05D003275 ORTHO05D003732 2.0e-16 90.9 95 51.6
Haze_18185 Corylus avellana HOM05D003275 ORTHO05D003732 5.7e-16 89.4 95 50.5
Nn6g35489 Nelumbo nucifera HOM05D003275 ORTHO05D003732 7.5e-16 89.0 95 49.5
Potri.006G228700 Populus trichocarpa HOM05D003275 ORTHO05D003732 7.5e-16 89.0 95 51.6
MD15G1059000 Malus domestica HOM05D003275 ORTHO05D003732 2.8e-15 87.0 95 46.3
RcHm_v2.0_Chr6g0311011 Rosa chinensis HOM05D003275 ORTHO05D003732 3.7e-15 86.7 95 48.4
CiPaw.15G038500 Carya illinoinensis HOM05D003275 ORTHO05D003732 4.9e-15 86.3 101 45.5
MBI01_g01261_MAGBIO Magnolia biondii HOM05D003275 ORTHO05D003732 4.9e-15 86.3 95 47.4
FvH4_2g31810 Fragaria vesca HOM05D003275 ORTHO05D003732 6.3e-15 85.9 95 47.4
MD08G1062700 Malus domestica HOM05D003275 ORTHO05D003732 6.3e-15 85.9 95 47.4
TAR383G0517 Trochodendron aralioides HOM05D003275 ORTHO05D003732 8.3e-15 85.5 95 49.5
Nn8g38852 Nelumbo nucifera HOM05D003275 ORTHO05D003732 1.8e-14 84.3 95 47.4
CANSAT25G2318 Cannabis sativa HOM05D003275 ORTHO05D003732 4.1e-14 83.2 101 45.5
GSVIVG01035399001 Vitis vinifera HOM05D003275 ORTHO05D003732 5.4e-14 82.8 93 48.4
QL02p001118 Quercus lobata HOM05D003275 ORTHO05D003732 9.1e-14 82.0 101 44.6
SEGI_25464 Sequoiadendron giganteum HOM05D003275 ORTHO05D003732 9.1e-14 82.0 115 41.7
Glyma.06G052300 Glycine max HOM05D003275 ORTHO05D003732 1.2e-13 81.6 95 46.3
ATR0026G038 Amborella trichopoda HOM05D003275 ORTHO05D003732 2.7e-13 80.5 100 45.0
Glyma.04G051500 Glycine max HOM05D003275 ORTHO05D003732 7.7e-13 79.0 95 46.3
Lalb_Chr08g0245071 Lupinus albus HOM05D003275 ORTHO05D003732 7.7e-13 79.0 95 46.3
BcaC05g26467 Brassica carinata HOM05D000260 ORTHO05D024301 1.7e-12 77.8 83 91.6
VMungo1309G2424 Vigna mungo HOM05D003275 ORTHO05D003732 2.3e-12 77.4 102 41.2
GSVIVG01022875001 Vitis vinifera HOM05D003275 ORTHO05D003732 2.9e-12 77.0 114 36.8
Phvul.009G077800 Phaseolus vulgaris HOM05D003275 ORTHO05D003732 3.8e-12 76.6 95 42.1
arahy.Tifrunner.gnm1.ann1.32MGU6 Arachis hypogaea HOM05D003275 ORTHO05D003732 5.0e-12 76.3 102 43.1
Haze_01710 Corylus avellana HOM05D003275 ORTHO05D003732 8.6e-12 75.5 100 40.0
Hma1.2p1_0217F.1_g092140 Hydrangea macrophylla HOM05D003275 ORTHO05D003732 8.6e-12 75.5 98 41.8
PGR031G0256 Punica granatum HOM05D003275 ORTHO05D003732 8.6e-12 75.5 115 40.0
AUR62041115 Chenopodium quinoa HOM05D003275 ORTHO05D003732 1.1e-11 75.1 114 36.8
Eucgr.I02729 Eucalyptus grandis HOM05D003275 ORTHO05D003732 1.1e-11 75.1 98 39.8
Thhalv10018974m.g Eutrema salsugineum HOM05D003275 ORTHO05D003732 1.1e-11 75.1 116 37.1
Potri.001G211600 Populus trichocarpa HOM05D003275 ORTHO05D003732 1.1e-11 75.1 95 41.1
Sabra01G0163400 Salix brachista HOM05D003275 ORTHO05D003732 1.1e-11 75.1 95 41.1
HPP92_000672 Vanilla planifolia HOM05D003275 ORTHO05D003732 1.1e-11 75.1 95 43.2
PGR142G1307 Punica granatum HOM05D003275 ORTHO05D003732 1.5e-11 74.7 98 39.8
CAN.G798.6 Capsicum annuum HOM05D003275 ORTHO05D003732 2.5e-11 73.9 95 42.1
AUR62014227 Chenopodium quinoa HOM05D003275 ORTHO05D003732 2.5e-11 73.9 114 36.0
Psat0ss1279g0400 Pisum sativum HOM05D003275 ORTHO05D003732 2.5e-11 73.9 95 42.1
Sp5g26350 Schrenkiella parvula HOM05D003275 ORTHO05D003732 2.5e-11 73.9 100 39.0
Thecc.02G087700 Theobroma cacao HOM05D003275 ORTHO05D003732 2.5e-11 73.9 95 40.0
TWI14G0966 Tripterygium wilfordii HOM05D003275 ORTHO05D003732 2.5e-11 73.9 98 38.8
AL2G30800 Arabidopsis lyrata HOM05D003275 ORTHO05D003732 3.3e-11 73.6 95 40.0
AT1G71190 Arabidopsis thaliana HOM05D003275 ORTHO05D003732 3.3e-11 73.6 95 40.0
CANSAT11G1659 Cannabis sativa HOM05D003275 ORTHO05D003732 3.3e-11 73.6 98 39.8
RcHm_v2.0_Chr7g0222011 Rosa chinensis HOM05D003275 ORTHO05D003732 3.3e-11 73.6 98 39.8
Sed0021534 Sechium edule HOM05D003275 ORTHO05D003732 3.3e-11 73.6 97 40.2
Sc07g0004860 Simmondsia chinensis HOM05D003275 ORTHO05D003732 3.3e-11 73.6 113 36.3
Atru.chr4.1466 Acer truncatum HOM05D003275 ORTHO05D003732 4.2e-11 73.2 95 40.0
ClCG09G013890 Citrullus lanatus HOM05D003275 ORTHO05D003732 4.2e-11 73.2 95 41.1
Dinv19374 Davidia involucrata HOM05D003275 ORTHO05D003732 4.2e-11 73.2 98 41.8
Medtr3g104420 Medicago truncatula HOM05D003275 ORTHO05D003732 4.2e-11 73.2 102 40.2
PSO832G1640 Papaver somniferum HOM05D003275 ORTHO05D003732 4.2e-11 73.2 95 43.2
PGR044G2065 Punica granatum HOM05D003275 ORTHO05D003732 4.2e-11 73.2 103 38.8
QL02p099154 Quercus lobata HOM05D003275 ORTHO05D003732 4.2e-11 73.2 96 39.6
PGSC0003DMG400023796 Solanum tuberosum HOM05D003275 ORTHO05D003732 4.2e-11 73.2 95 42.1
TAR381G0360 Trochodendron aralioides HOM05D003275 ORTHO05D003732 4.2e-11 73.2 98 39.8
C06p35730 Brassica napus HOM05D000145 ORTHO05D003732 5.6e-11 72.8 95 38.9
BolC6t38696H Brassica oleracea HOM05D000145 ORTHO05D003732 5.6e-11 72.8 95 38.9
CARHR064460 Cardamine hirsuta HOM05D003275 ORTHO05D003732 5.6e-11 72.8 95 38.9
FAN08G1391 Fragaria x ananassa HOM05D003275 ORTHO05D003732 5.6e-11 72.8 96 39.6
FAN18G2082 Fragaria x ananassa HOM05D003275 ORTHO05D003732 5.6e-11 72.8 96 39.6
Solyc01g104080.4 Solanum lycopersicum HOM05D003275 ORTHO05D003732 5.6e-11 72.8 95 41.1
Sopen01g046490 Solanum pennellii HOM05D003275 ORTHO05D003732 5.6e-11 72.8 95 41.1
CsaV3_6G037450 Cucumis sativus L. HOM05D003275 ORTHO05D003732 7.2e-11 72.4 96 39.6
FAN15G3499 Fragaria x ananassa HOM05D003275 ORTHO05D003732 7.2e-11 72.4 122 37.7
MD08G1233100 Malus domestica HOM05D003275 ORTHO05D003732 7.2e-11 72.4 98 38.8
Oeu008899.2 Olea europaea HOM05D003275 ORTHO05D003732 7.2e-11 72.4 95 40.0
Rhsim05G0119500 Rhododendron simsii HOM05D003275 ORTHO05D003732 7.2e-11 72.4 98 39.8
THA.LOC104798496 Tarenaya hassleriana HOM05D003275 ORTHO05D003732 7.2e-11 72.4 95 41.1
BcaB03g14876 Brassica carinata HOM05D003275 ORTHO05D003732 9.5e-11 72.0 96 36.5
BcaB03g15596 Brassica carinata HOM05D003275 ORTHO05D003732 9.5e-11 72.0 95 37.9
BcaC08g45789 Brassica carinata HOM05D000145 ORTHO05D003732 9.5e-11 72.0 95 37.9
A07p30830 Brassica napus HOM05D000145 ORTHO05D003732 9.5e-11 72.0 95 37.9
BraA07t30720Z Brassica rapa HOM05D000145 ORTHO05D003732 9.5e-11 72.0 95 37.9
Cc02_g22610 Coffea canephora HOM05D003275 ORTHO05D003732 9.5e-11 72.0 96 40.6
MELO3C014372.2 Cucumis melo HOM05D003275 ORTHO05D003732 9.5e-11 72.0 97 39.2
Gohir.D13G033600 Gossypium hirsutum HOM05D003275 ORTHO05D003732 9.5e-11 72.0 86 41.9
Gorai.013G038000 Gossypium raimondii HOM05D003275 ORTHO05D003732 9.5e-11 72.0 86 41.9
HanXRQChr03g0073631 Helianthus annuus HOM05D003275 ORTHO05D003732 9.5e-11 72.0 95 38.9
Peaxi162Scf00011g00534 Petunia axillaris HOM05D003275 ORTHO05D003732 9.5e-11 72.0 95 40.0
Phvul.011G155400 Phaseolus vulgaris HOM05D003275 ORTHO05D003732 9.5e-11 72.0 103 36.9
vmacro19886 Vaccinium macrocarpon HOM05D003275 ORTHO05D003732 9.5e-11 72.0 96 39.6
Actinidia26152 Actinidia chinensis HOM05D003275 ORTHO05D003732 1.2e-10 71.6 96 38.5
CSS0025935 Camellia sinensis var. sinensis HOM05D003275 ORTHO05D003732 1.2e-10 71.6 98 37.8
CSS0029284 Camellia sinensis var. sinensis HOM05D003275 ORTHO05D003732 1.2e-10 71.6 98 37.8
Carub.0002s1807 Capsella rubella HOM05D003275 ORTHO05D003732 1.2e-10 71.6 95 40.0
CiPaw.05G048000 Carya illinoinensis HOM05D003275 ORTHO05D003732 1.2e-10 71.6 98 37.8
Migut.B00827 Erythranthe guttata HOM05D003275 ORTHO05D003732 1.2e-10 71.6 95 37.9
Manes.07G017000 Manihot esculenta HOM05D003275 ORTHO05D003732 1.2e-10 71.6 95 40.0
Nitab4.5_0000816g0100 Nicotiana tabacum HOM05D003275 ORTHO05D003732 1.2e-10 71.6 86 43.0
Nitab4.5_0007514g0030 Nicotiana tabacum HOM05D003275 ORTHO05D003732 1.2e-10 71.6 86 43.0
THA.LOC104812760 Tarenaya hassleriana HOM05D003275 ORTHO05D003732 1.2e-10 71.6 95 37.9
HPP92_011386 Vanilla planifolia HOM05D003275 ORTHO05D003732 1.2e-10 71.6 96 41.7
Prupe.1G571000 Prunus persica HOM05D003275 ORTHO05D003732 1.6e-10 71.2 98 38.8
MSTRG.16515 Avicennia marina HOM05D003275 ORTHO05D003732 2.1e-10 70.9 95 40.0
Ciclev10002064m.g Citrus clementina HOM05D003275 ORTHO05D003732 2.1e-10 70.9 93 39.8
COL.COLO4_11783 Corchorus olitorius HOM05D003275 ORTHO05D003732 2.1e-10 70.9 93 37.6
Lj1g0012846 Lotus japonicus HOM05D003275 ORTHO05D003732 2.1e-10 70.9 109 38.5
Gohir.A13G035200 Gossypium hirsutum HOM05D003275 ORTHO05D003732 2.8e-10 70.5 86 40.7
Lalb_Chr18g0060911 Lupinus albus HOM05D003275 ORTHO05D003732 2.8e-10 70.5 98 38.8
EL10Ac6g14059 Beta vulgaris HOM05D003275 ORTHO05D003732 3.6e-10 70.1 95 38.9
COL.COLO4_11784 Corchorus olitorius HOM05D003275 ORTHO05D003732 3.6e-10 70.1 106 34.0
DCAR_006703 Daucus carota HOM05D003275 ORTHO05D003732 3.6e-10 70.1 98 39.8
ECA240G3384 Erigeron canadensis HOM05D000006 ORTHO05D000001 3.6e-10 70.1 95 37.9
Pp3c3_10770 Physcomitrium patens HOM05D003275 ORTHO05D003732 3.6e-10 70.1 98 38.8
arahy.Tifrunner.gnm1.ann1.WQ6HRD Arachis hypogaea HOM05D003275 ORTHO05D003732 4.7e-10 69.7 108 40.7
CSS0049502 Camellia sinensis var. sinensis HOM05D003275 ORTHO05D003732 4.7e-10 69.7 115 33.0
Glyma.08G186900 Glycine max HOM05D003275 ORTHO05D003732 4.7e-10 69.7 105 36.2
PSO170G2758 Papaver somniferum HOM05D003275 ORTHO05D003732 4.7e-10 69.7 120 33.3
Aa31LG4G9320 Aethionema arabicum HOM05D003275 ORTHO05D003732 6.1e-10 69.3 95 36.8
Ah.03g137170 Amaranthus hybridus HOM05D003275 ORTHO05D003732 6.1e-10 69.3 95 38.9
Lj6g0004299 Lotus japonicus HOM05D003275 ORTHO05D003732 6.1e-10 69.3 105 36.2
Medtr2g006770 Medicago truncatula HOM05D003275 ORTHO05D003732 6.1e-10 69.3 98 38.8
SGA_v2.0_scaffold110G31330 Striga asiatica HOM05D003275 ORTHO05D003732 6.1e-10 69.3 84 41.7
Duzib132G0935 Durio zibethinus HOM05D003275 ORTHO05D003732 8.0e-10 68.9 95 40.0
Glyma.15G046100 Glycine max HOM05D003275 ORTHO05D003732 8.0e-10 68.9 105 36.2
Nn5g28307 Nelumbo nucifera HOM05D003275 ORTHO05D003732 8.0e-10 68.9 98 38.8
Aqoxy6G00228 Aquilegia oxysepala HOM05D001206 ORTHO05D002068 1.0e-09 68.6 98 37.8
PSO528G0003 Papaver somniferum HOM05D003275 ORTHO05D003732 1.0e-09 68.6 120 32.5
TPR.G2088 Trifolium pratense HOM05D003275 ORTHO05D003732 1.0e-09 68.6 98 38.8
VMungo1127G2090 Vigna mungo HOM05D003275 ORTHO05D003732 1.0e-09 68.6 103 35.0
Cpa.g.sc113.53 Carica papaya HOM05D003275 ORTHO05D003732 1.4e-09 68.2 95 40.0
Ca_00066_v3 Cicer arietinum L. HOM05D003275 ORTHO05D003732 1.4e-09 68.2 105 36.2
arahy.Tifrunner.gnm1.ann1.9MB0YU Arachis hypogaea HOM05D003275 ORTHO05D003732 2.3e-09 67.4 96 38.5
CARHR056290 Cardamine hirsuta HOM05D003275 ORTHO05D003732 2.3e-09 67.4 103 35.9
ATR0584G052 Amborella trichopoda HOM05D003275 ORTHO05D003732 3.0e-09 67.0 98 36.7
arahy.Tifrunner.gnm1.ann1.4G20NP Arachis hypogaea HOM05D003275 ORTHO05D003732 3.0e-09 67.0 96 37.5
Lalb_Chr14g0366311 Lupinus albus HOM05D003275 ORTHO05D003732 4.0e-09 66.6 95 40.0
Ca_17783_v3 Cicer arietinum L. HOM05D003275 ORTHO05D003732 5.2e-09 66.2 95 38.9
Nn5g28309 Nelumbo nucifera HOM05D003275 ORTHO05D003732 6.8e-09 65.9 96 38.5
Lj9C304T9 Lonicera japonica HOM05D003275 ORTHO05D003732 1.2e-08 65.1 123 38.2
Psat1g221280 Pisum sativum HOM05D003275 ORTHO05D003732 1.5e-08 64.7 98 37.8
VMungo0251G2850 Vigna mungo HOM05D003275 ORTHO05D003732 1.5e-08 64.7 91 38.5
Zm00001eb362500 Zea mays HOM05D003275 ORTHO05D003732 1.5e-08 64.7 106 32.1
Glyma.08G131300 Glycine max HOM05D003275 ORTHO05D003732 2.0e-08 64.3 98 36.7
Lj4g0028052 Lotus japonicus HOM05D003275 ORTHO05D003732 2.0e-08 64.3 111 32.4
SMO339G0029 Selaginella moellendorffii HOM05D003275 ORTHO05D003732 2.6e-08 63.9 86 36.0
Lsat_1_v5_gn_9_118660 Lactuca sativa HOM05D003275 ORTHO05D003732 3.4e-08 63.5 98 35.7
Medtr8g089715 Medicago truncatula HOM05D003275 ORTHO05D003732 3.4e-08 63.5 93 35.5
Os01g0962200 Oryza sativa ssp. japonica HOM05D003275 ORTHO05D003732 3.4e-08 63.5 95 33.7
Psat7g059520 Pisum sativum HOM05D003275 ORTHO05D003732 3.4e-08 63.5 86 40.7
BcaB08g35547 Brassica carinata HOM05D003275 ORTHO05D003732 4.4e-08 63.2 35 82.9
CSS0010820 Camellia sinensis var. sinensis HOM05D003275 ORTHO05D003732 5.7e-08 62.8 95 33.7
CSS0034523 Camellia sinensis var. sinensis HOM05D003275 ORTHO05D003732 5.7e-08 62.8 95 33.7
TPR.G13175 Trifolium pratense HOM05D003275 ORTHO05D003732 5.7e-08 62.8 95 36.8
Mapoly0016s0101 Marchantia polymorpha HOM05D003275 ORTHO05D003732 7.5e-08 62.4 93 33.3
Medtr1g016080 Medicago truncatula HOM05D003275 ORTHO05D003732 7.5e-08 62.4 95 36.8
TPR.G6212 Trifolium pratense HOM05D003275 ORTHO05D003732 7.5e-08 62.4 109 33.9
CBR_g3553 Chara braunii HOM05D003275 ORTHO05D003732 9.8e-08 62.0 97 34.0
Prupe.1G411500 Prunus persica HOM05D003275 ORTHO05D003732 9.8e-08 62.0 40 67.5
FAN24G1665 Fragaria x ananassa HOM05D003275 ORTHO05D003732 1.7e-07 61.2 40 67.5
Phvul.002G259100 Phaseolus vulgaris HOM05D003275 ORTHO05D003732 2.9e-07 60.5 91 36.3
AagrBONN_evm.TU.Sc2ySwM_117.3889 Anthoceros agrestis HOM05D003275 ORTHO05D003732 3.7e-07 60.1 107 32.7
CDE06G1849 Ceratophyllum demersum HOM05D003275 ORTHO05D003732 4.9e-07 59.7 96 35.4
Lj5g0008225 Lotus japonicus HOM05D003275 ORTHO05D003732 6.4e-07 59.3 95 37.9
Dinv27990 Davidia involucrata HOM05D003275 ORTHO05D003732 1.4e-06 58.2 41 68.3
Psat0s4497g0080 Pisum sativum HOM05D003275 ORTHO05D003732 7.0e-06 55.8 86 39.5


User provided reference genes

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