Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g00821 Brassica carinata HOM05D002030 ORTHO05D004391 3.2e-46 188.0 88 100.0
TAR636G2333 Trochodendron aralioides HOM05D002030 ORTHO05D004391 3.7e-18 94.7 83 57.8
AT2G44350 Arabidopsis thaliana HOM05D002030 ORTHO05D004391 6.9e-17 90.5 127 44.9
AL4G43330 Arabidopsis lyrata HOM05D002030 ORTHO05D004391 9.0e-17 90.1 127 44.1
Aa31LG1G25930 Aethionema arabicum HOM05D002030 ORTHO05D004391 3.4e-16 88.2 127 43.3
Thhalv10001384m.g Eutrema salsugineum HOM05D002030 ORTHO05D004391 7.7e-16 87.0 127 42.5
Sp4g26410 Schrenkiella parvula HOM05D002030 ORTHO05D004391 7.7e-16 87.0 127 42.5
Carub.0004s2693 Capsella rubella HOM05D002030 ORTHO05D004391 1.3e-15 86.3 126 42.9
BcaC01g05172 Brassica carinata HOM05D002030 ORTHO05D004391 1.7e-15 85.9 127 41.7
C03p29550 Brassica napus HOM05D002030 ORTHO05D004391 1.7e-15 85.9 127 41.7
BolC3t15304H Brassica oleracea HOM05D002030 ORTHO05D004391 1.7e-15 85.9 127 41.7
A03p24780 Brassica napus HOM05D002030 ORTHO05D004391 5.0e-15 84.3 127 40.9
BraA03t11685Z Brassica rapa HOM05D002030 ORTHO05D004391 5.0e-15 84.3 127 40.9
BcaB01g03317 Brassica carinata HOM05D002030 ORTHO05D004391 6.5e-15 84.0 127 40.9
Cfa010689 Carpinus fangiana HOM05D002030 ORTHO05D004391 8.5e-15 83.6 126 41.3
A04p33270 Brassica napus HOM05D002030 ORTHO05D004391 1.1e-14 83.2 127 40.2
C04p70970 Brassica napus HOM05D002030 ORTHO05D004391 1.1e-14 83.2 127 40.2
BolC4t28600H Brassica oleracea HOM05D002030 ORTHO05D004391 1.1e-14 83.2 127 40.2
BraA04t18788Z Brassica rapa HOM05D002030 ORTHO05D004391 1.1e-14 83.2 127 40.2
Haze_03285 Corylus avellana HOM05D002030 ORTHO05D004391 1.1e-14 83.2 127 40.9
Peaxi162Scf00402g00612 Petunia axillaris HOM05D002030 ORTHO05D004391 1.4e-14 82.8 127 40.9
BcaB06g29369 Brassica carinata HOM05D002030 ORTHO05D004391 1.9e-14 82.4 124 41.1
CiPaw.16G066900 Carya illinoinensis HOM05D002030 ORTHO05D004391 2.5e-14 82.0 126 40.5
CANSAT11G1376 Cannabis sativa HOM05D002030 ORTHO05D004391 3.2e-14 81.6 127 39.4
Manes.10G152000 Manihot esculenta HOM05D002030 ORTHO05D004391 5.5e-14 80.9 127 39.4
TWI73G0973 Tripterygium wilfordii HOM05D002030 ORTHO05D004391 5.5e-14 80.9 127 39.4
COL.COLO4_26822 Corchorus olitorius HOM05D002030 ORTHO05D004391 7.2e-14 80.5 127 39.4
Gohir.A05G160100 Gossypium hirsutum HOM05D002030 ORTHO05D004391 7.2e-14 80.5 127 39.4
Gohir.D05G162800 Gossypium hirsutum HOM05D002030 ORTHO05D004391 7.2e-14 80.5 127 39.4
Gorai.009G167800 Gossypium raimondii HOM05D002030 ORTHO05D004391 7.2e-14 80.5 127 39.4
MBI04_g33965_MAGBIO Magnolia biondii HOM05D002030 ORTHO05D004391 7.2e-14 80.5 125 39.2
Lj9A621G49 Lonicera japonica HOM05D002030 ORTHO05D004391 1.6e-13 79.3 125 39.2
PGR044G1446 Punica granatum HOM05D002030 ORTHO05D004391 1.6e-13 79.3 127 39.4
Eucgr.G03412 Eucalyptus grandis HOM05D002030 ORTHO05D004391 2.1e-13 79.0 127 38.6
QL04p001335 Quercus lobata HOM05D002030 ORTHO05D004391 2.1e-13 79.0 125 39.2
QL04p001534 Quercus lobata HOM05D002030 ORTHO05D004391 2.1e-13 79.0 125 39.2
TWI09G1279 Tripterygium wilfordii HOM05D002030 ORTHO05D004391 2.1e-13 79.0 127 38.6
Actinidia15851 Actinidia chinensis HOM05D002030 ORTHO05D004391 2.7e-13 78.6 125 38.4
Actinidia21583 Actinidia chinensis HOM05D002030 ORTHO05D004391 2.7e-13 78.6 125 38.4
CSS0004924 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D004391 2.7e-13 78.6 125 38.4
CSS0020062 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D004391 2.7e-13 78.6 125 38.4
Cpa.g.sc189.5 Carica papaya HOM05D002030 ORTHO05D004391 2.7e-13 78.6 126 38.9
CsaV3_7G031480 Cucumis sativus L. HOM05D002030 ORTHO05D004391 3.6e-13 78.2 125 39.2
AUR62011552 Chenopodium quinoa HOM05D002030 ORTHO05D004391 4.6e-13 77.8 125 38.4
AUR62016372 Chenopodium quinoa HOM05D002030 ORTHO05D004391 4.6e-13 77.8 125 38.4
Manes.07G000500 Manihot esculenta HOM05D002030 ORTHO05D004391 4.6e-13 77.8 126 39.7
vmacro13609 Vaccinium macrocarpon HOM05D002030 ORTHO05D004391 4.6e-13 77.8 125 38.4
ATR0006G067 Amborella trichopoda HOM05D002030 ORTHO05D004391 6.1e-13 77.4 126 38.1
Os11g0538900 Oryza sativa ssp. japonica HOM05D002030 ORTHO05D004391 6.1e-13 77.4 126 38.1
GSVIVG01001358001 Vitis vinifera HOM05D002030 ORTHO05D004391 6.1e-13 77.4 126 38.1
Cc02_g26940 Coffea canephora HOM05D002030 ORTHO05D004391 7.9e-13 77.0 126 38.1
MELO3C023506.2 Cucumis melo HOM05D002030 ORTHO05D004391 7.9e-13 77.0 125 38.4
THA.LOC104817150 Tarenaya hassleriana HOM05D002030 ORTHO05D004391 7.9e-13 77.0 125 38.4
Thecc.01G416600 Theobroma cacao HOM05D002030 ORTHO05D004391 7.9e-13 77.0 123 39.0
CDE06G2277 Ceratophyllum demersum HOM05D002030 ORTHO05D004391 1.0e-12 76.6 123 39.0
Atru.chr11.2703 Acer truncatum HOM05D002030 ORTHO05D004391 1.4e-12 76.3 125 37.6
ATR0626G367 Amborella trichopoda HOM05D002030 ORTHO05D004391 1.4e-12 76.3 126 37.3
EL10Ac4g10124 Beta vulgaris HOM05D002030 ORTHO05D004391 1.4e-12 76.3 125 37.6
EL10Ac4g10165 Beta vulgaris HOM05D002030 ORTHO05D004391 1.4e-12 76.3 125 37.6
Duzib168G0303 Durio zibethinus HOM05D002030 ORTHO05D004391 1.4e-12 76.3 126 38.1
MBI01_g01369_MAGBIO Magnolia biondii HOM05D002030 ORTHO05D004391 1.4e-12 76.3 125 38.4
Sed0004903 Sechium edule HOM05D002030 ORTHO05D004391 1.4e-12 76.3 125 38.4
SGA_v2.0_scaffold95G28770 Striga asiatica HOM05D002030 ORTHO05D004391 1.4e-12 76.3 127 37.8
unitig_61.g26437 Utricularia gibba HOM05D002030 ORTHO05D004391 1.4e-12 76.3 125 38.4
Actinidia05845 Actinidia chinensis HOM05D002030 ORTHO05D004391 1.8e-12 75.9 125 38.4
Os02g0194100 Oryza sativa ssp. japonica HOM05D002030 ORTHO05D004391 1.8e-12 75.9 126 37.3
Rhsim07G0049800 Rhododendron simsii HOM05D002030 ORTHO05D004391 1.8e-12 75.9 125 37.6
Solyc01g073740.4 Solanum lycopersicum HOM05D002030 ORTHO05D004391 1.8e-12 75.9 124 38.7
Sopen01g033350 Solanum pennellii HOM05D002030 ORTHO05D004391 1.8e-12 75.9 124 39.5
PGSC0003DMG400028982 Solanum tuberosum HOM05D002030 ORTHO05D004391 1.8e-12 75.9 124 39.5
CAN.G129.46 Capsicum annuum HOM05D002030 ORTHO05D004391 2.3e-12 75.5 124 38.7
Ciclev10031423m.g Citrus clementina HOM05D002030 ORTHO05D004391 2.3e-12 75.5 125 37.6
ECA248G2977 Erigeron canadensis HOM05D002030 ORTHO05D004391 2.3e-12 75.5 125 36.8
Nitab4.5_0000468g0060 Nicotiana tabacum HOM05D002030 ORTHO05D004391 2.3e-12 75.5 124 37.9
Nitab4.5_0023974g0010 Nicotiana tabacum HOM05D002030 ORTHO05D004391 2.3e-12 75.5 124 37.9
Zm00001eb236450 Zea mays HOM05D002030 ORTHO05D004391 2.3e-12 75.5 126 37.3
Aqoxy2G00078 Aquilegia oxysepala HOM05D002030 ORTHO05D004391 3.0e-12 75.1 124 37.9
AUR62039829 Chenopodium quinoa HOM05D002030 ORTHO05D004391 3.0e-12 75.1 125 36.8
RcHm_v2.0_Chr1g0313271 Rosa chinensis HOM05D002030 ORTHO05D004391 3.0e-12 75.1 126 38.1
MSTRG.4998 Avicennia marina HOM05D002030 ORTHO05D004391 3.9e-12 74.7 125 37.6
AUR62000179 Chenopodium quinoa HOM05D002030 ORTHO05D007413 3.9e-12 74.7 125 36.8
ECA234G1190 Erigeron canadensis HOM05D002030 ORTHO05D004391 3.9e-12 74.7 125 36.8
HanXRQChr01g0018081 Helianthus annuus HOM05D002030 ORTHO05D004391 3.9e-12 74.7 125 36.8
ATR0626G052 Amborella trichopoda HOM05D002030 ORTHO05D004391 5.1e-12 74.3 108 41.7
Migut.N01657 Erythranthe guttata HOM05D002030 ORTHO05D004391 5.1e-12 74.3 125 37.6
MD00G1055300 Malus domestica HOM05D002030 ORTHO05D004391 5.1e-12 74.3 127 38.6
Zm00001eb206090 Zea mays HOM05D002030 ORTHO05D004391 5.1e-12 74.3 126 36.5
Dinv43498 Davidia involucrata HOM05D002030 ORTHO05D004391 6.7e-12 73.9 123 38.2
Hma1.2p1_0293F.1_g116260 Hydrangea macrophylla HOM05D002030 ORTHO05D004391 6.7e-12 73.9 127 37.0
Hma1.2p1_0505F.1_g168140 Hydrangea macrophylla HOM05D002030 ORTHO05D004391 6.7e-12 73.9 127 37.0
MD02G1319300 Malus domestica HOM05D002030 ORTHO05D004391 6.7e-12 73.9 127 37.8
Sed0005598 Sechium edule HOM05D002030 ORTHO05D004391 6.7e-12 73.9 125 36.8
FvH4_7g00080 Fragaria vesca HOM05D002030 ORTHO05D004391 8.8e-12 73.6 126 37.3
FAN01G0191 Fragaria x ananassa HOM05D002030 ORTHO05D004391 8.8e-12 73.6 126 37.3
FAN01G3098 Fragaria x ananassa HOM05D002030 ORTHO05D004391 8.8e-12 73.6 126 37.3
FAN06G4832 Fragaria x ananassa HOM05D002030 ORTHO05D004391 8.8e-12 73.6 126 37.3
FAN10G1580 Fragaria x ananassa HOM05D002030 ORTHO05D004391 8.8e-12 73.6 126 37.3
SalBow5G3889 Salvia bowleyana HOM05D002030 ORTHO05D004391 8.8e-12 73.6 125 36.8
TAR623G1248 Trochodendron aralioides HOM05D002030 ORTHO05D004391 8.8e-12 73.6 125 38.4
TAR633G1299 Trochodendron aralioides HOM05D002030 ORTHO05D004391 8.8e-12 73.6 125 38.4
Zm00001eb206100 Zea mays HOM05D002030 ORTHO05D004391 8.8e-12 73.6 126 36.5
PSO339G0144 Papaver somniferum HOM05D002030 ORTHO05D004391 1.1e-11 73.2 126 36.5
PSO384G2681 Papaver somniferum HOM05D002030 ORTHO05D004391 1.1e-11 73.2 126 36.5
Prupe.2G002900 Prunus persica HOM05D002030 ORTHO05D004391 1.1e-11 73.2 127 37.8
Migut.O00475 Erythranthe guttata HOM05D002030 ORTHO05D004391 1.5e-11 72.8 125 36.8
HanXRQChr16g0520361 Helianthus annuus HOM05D002030 ORTHO05D004391 1.5e-11 72.8 124 36.3
HPP92_022742 Vanilla planifolia HOM05D002030 ORTHO05D004391 1.5e-11 72.8 126 37.3
Potri.001G230500 Populus trichocarpa HOM05D002030 ORTHO05D004391 2.5e-11 72.0 124 38.7
EL10Ac9g21933 Beta vulgaris HOM05D002030 ORTHO05D004391 3.3e-11 71.6 122 36.9
FAN03G0965 Fragaria x ananassa HOM05D002030 ORTHO05D004391 3.3e-11 71.6 126 36.5
Sp5g03110 Schrenkiella parvula HOM05D002030 ORTHO05D004391 3.3e-11 71.6 110 39.1
Aa31LG10G14260 Aethionema arabicum HOM05D002030 ORTHO05D004391 5.7e-11 70.9 123 38.2
MSTRG.17066 Avicennia marina HOM05D002030 ORTHO05D004391 9.7e-11 70.1 125 36.8
SEGI_39166 Sequoiadendron giganteum HOM05D002030 ORTHO05D004391 9.7e-11 70.1 123 37.4
Mapoly0383s0001 Marchantia polymorpha HOM05D002030 ORTHO05D004391 1.3e-10 69.7 134 31.3
Lalb_Chr20g0108201 Lupinus albus HOM05D002030 ORTHO05D004391 1.7e-10 69.3 125 36.8
CARHR170410 Cardamine hirsuta HOM05D002030 ORTHO05D004391 2.2e-10 68.9 124 35.5
Lsat_1_v5_gn_1_87220 Lactuca sativa HOM05D002030 ORTHO05D004391 2.2e-10 68.9 122 36.1
AT3G60100 Arabidopsis thaliana HOM05D002030 ORTHO05D004391 2.8e-10 68.6 122 36.1
BcaB02g08193 Brassica carinata HOM05D002030 ORTHO05D004391 2.8e-10 68.6 120 36.7
BcaC02g10111 Brassica carinata HOM05D002030 ORTHO05D004391 2.8e-10 68.6 120 36.7
A04p01870 Brassica napus HOM05D002030 ORTHO05D004391 2.8e-10 68.6 120 36.7
C04p32630 Brassica napus HOM05D002030 ORTHO05D004391 2.8e-10 68.6 120 36.7
BolC4t24830H Brassica oleracea HOM05D002030 ORTHO05D004391 2.8e-10 68.6 120 36.7
BraA04t15910Z Brassica rapa HOM05D002030 ORTHO05D004391 2.8e-10 68.6 120 36.7
Carub.0005s2683 Capsella rubella HOM05D002030 ORTHO05D004391 2.8e-10 68.6 122 36.1
Thhalv10005966m.g Eutrema salsugineum HOM05D002030 ORTHO05D004391 2.8e-10 68.6 122 36.1
Lalb_Chr25g0283641 Lupinus albus HOM05D002030 ORTHO05D004391 4.8e-10 67.8 125 36.0
Mapoly0063s0010 Marchantia polymorpha HOM05D002030 ORTHO05D004391 8.2e-10 67.0 126 32.5
Oeu000987.1 Olea europaea HOM05D002030 ORTHO05D004391 1.1e-09 66.6 123 35.0
AL5G42300 Arabidopsis lyrata HOM05D002030 ORTHO05D004391 1.4e-09 66.2 122 35.2
Mapoly0200s0007 Marchantia polymorpha HOM05D002030 ORTHO05D004391 1.8e-09 65.9 126 31.7
Phvul.005G041600 Phaseolus vulgaris HOM05D002030 ORTHO05D004391 2.4e-09 65.5 125 35.2
Ca_02885_v3 Cicer arietinum L. HOM05D002030 ORTHO05D004391 3.1e-09 65.1 125 35.2
Ca_02887_v3 Cicer arietinum L. HOM05D002030 ORTHO05D004391 3.1e-09 65.1 125 35.2
VMungo1080G0649 Vigna mungo HOM05D002030 ORTHO05D004391 3.1e-09 65.1 125 35.2
Mapoly0216s0011 Marchantia polymorpha HOM05D002030 ORTHO05D004391 4.1e-09 64.7 122 32.8
arahy.Tifrunner.gnm1.ann1.PFQ45M Arachis hypogaea HOM05D002030 ORTHO05D004391 6.9e-09 63.9 123 35.8
arahy.Tifrunner.gnm1.ann1.X24NYN Arachis hypogaea HOM05D002030 ORTHO05D004391 6.9e-09 63.9 123 35.8
Lj3g0024225 Lotus japonicus HOM05D002030 ORTHO05D004391 1.5e-08 62.8 119 35.3
Oeu024931.4 Olea europaea HOM05D002030 ORTHO05D004391 1.5e-08 62.8 61 55.7
Glyma.08G157700 Glycine max HOM05D002030 ORTHO05D004391 3.4e-08 61.6 125 34.4
Glyma.15G268500 Glycine max HOM05D002030 ORTHO05D004391 3.4e-08 61.6 125 34.4
Medtr2g061630 Medicago truncatula HOM05D002030 ORTHO05D004391 3.4e-08 61.6 118 35.6
Psat1g127120 Pisum sativum HOM05D002030 ORTHO05D004391 3.4e-08 61.6 118 35.6
Sabra16G0138000 Salix brachista HOM05D002030 ORTHO05D004391 3.4e-08 61.6 61 55.7
ClCG09G003730 Citrullus lanatus HOM05D002030 ORTHO05D004391 7.7e-08 60.5 61 55.7
DCAR_029593 Daucus carota HOM05D002030 ORTHO05D004391 7.7e-08 60.5 61 52.5
Potri.009G023900 Populus trichocarpa HOM05D002030 ORTHO05D028124 1.3e-07 59.7 63 52.4
Oeu032787.1 Olea europaea HOM05D002030 ORTHO05D004391 1.7e-07 59.3 61 54.1
Pp3c12_7330 Physcomitrium patens HOM05D002030 ORTHO05D004391 1.7e-07 59.3 118 32.2
SMO118G0428 Selaginella moellendorffii HOM05D002030 ORTHO05D004391 8.5e-07 57.0 50 54.0
Pp3c1_40030 Physcomitrium patens HOM05D002030 ORTHO05D004391 9.4e-06 53.5 88 35.2


User provided reference genes

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