Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g00676 Brassica carinata HOM05D000776 ORTHO05D027426 2.4e-44 181.8 92 100.0
BcaC01g00675 Brassica carinata HOM05D000776 ORTHO05D002281 1.7e-26 122.5 63 98.4
C03p82990 Brassica napus HOM05D000776 ORTHO05D002281 1.7e-26 122.5 63 98.4
A08p14910 Brassica napus HOM05D000776 ORTHO05D002281 2.2e-26 122.1 63 96.8
BraA08t33473Z Brassica rapa HOM05D000776 ORTHO05D002281 2.2e-26 122.1 63 96.8
BolC3t20580H Brassica oleracea HOM05D000776 ORTHO05D002281 1.1e-25 119.8 63 95.2
BcaB03g11675 Brassica carinata HOM05D000776 ORTHO05D002281 2.5e-25 118.6 64 90.6
BolC1t01402H Brassica oleracea HOM05D000776 ORTHO05D002281 1.7e-21 105.9 63 81.0
Sp7g18810 Schrenkiella parvula HOM05D000776 ORTHO05D002281 1.7e-21 105.9 63 81.0
BcaC09g51317 Brassica carinata HOM05D000776 ORTHO05D002281 2.2e-21 105.5 63 81.0
A01p12150 Brassica napus HOM05D000776 ORTHO05D002281 2.2e-21 105.5 63 81.0
C01p14470 Brassica napus HOM05D000776 ORTHO05D002281 2.2e-21 105.5 63 81.0
BraA01t01157Z Brassica rapa HOM05D000776 ORTHO05D002281 2.2e-21 105.5 63 81.0
Thhalv10025334m.g Eutrema salsugineum HOM05D000776 ORTHO05D002281 2.2e-21 105.5 63 81.0
AL7G33410 Arabidopsis lyrata HOM05D000776 ORTHO05D002281 2.8e-21 105.1 63 81.0
AT4G20460 Arabidopsis thaliana HOM05D000776 ORTHO05D002281 6.3e-21 104.0 63 79.4
BcaNung04157 Brassica carinata HOM05D000776 ORTHO05D002281 6.3e-21 104.0 63 79.4
CARHR227280 Cardamine hirsuta HOM05D000776 ORTHO05D002281 2.7e-19 98.6 63 79.4
Carub.0007s2071 Capsella rubella HOM05D000776 ORTHO05D002281 7.7e-19 97.1 63 76.2
THA.LOC104806245 Tarenaya hassleriana HOM05D000776 ORTHO05D002281 8.5e-18 93.6 69 65.2
Aa31LG6G2830 Aethionema arabicum HOM05D000776 ORTHO05D002281 4.4e-14 81.3 63 66.7
Dinv04217 Davidia involucrata HOM05D000776 ORTHO05D002281 3.1e-12 75.1 68 54.4
Migut.M01942 Erythranthe guttata HOM05D000776 ORTHO05D002281 5.4e-12 74.3 65 53.8
Sabra11G0143900 Salix brachista HOM05D000776 ORTHO05D002281 1.6e-11 72.8 64 54.7
VMungo0540G0014 Vigna mungo HOM05D000776 ORTHO05D002281 1.6e-11 72.8 69 53.6
Oeu000490.1 Olea europaea HOM05D000776 ORTHO05D002281 2.7e-11 72.0 69 52.2
Oeu063143.1 Olea europaea HOM05D000776 ORTHO05D002281 2.7e-11 72.0 66 50.0
Potri.001G459700 Populus trichocarpa HOM05D000776 ORTHO05D002281 2.7e-11 72.0 64 56.2
Sabra16G0311200 Salix brachista HOM05D000776 ORTHO05D002281 2.7e-11 72.0 64 56.2
AT1G30620 Arabidopsis thaliana HOM05D000776 ORTHO05D002281 3.5e-11 71.6 69 53.6
Cc09_g07050 Coffea canephora HOM05D000776 ORTHO05D002281 3.5e-11 71.6 66 48.5
Lj6g0025051 Lotus japonicus HOM05D000776 ORTHO05D002281 3.5e-11 71.6 64 54.7
SGA_v2.0_scaffold298G47641 Striga asiatica HOM05D000776 ORTHO05D002281 4.5e-11 71.2 65 50.8
Thhalv10007740m.g Eutrema salsugineum HOM05D000776 ORTHO05D002281 5.9e-11 70.9 69 52.2
Potri.011G156100 Populus trichocarpa HOM05D000776 ORTHO05D002281 5.9e-11 70.9 64 56.2
Sp1g26520 Schrenkiella parvula HOM05D000776 ORTHO05D002281 5.9e-11 70.9 69 52.2
AL1G44680 Arabidopsis lyrata HOM05D000776 ORTHO05D002281 7.8e-11 70.5 69 52.2
MSTRG.7570 Avicennia marina HOM05D000776 ORTHO05D002281 7.8e-11 70.5 65 47.7
Medtr2g032100 Medicago truncatula HOM05D000776 ORTHO05D002281 7.8e-11 70.5 69 49.3
CSS0038457 Camellia sinensis var. sinensis HOM05D000776 ORTHO05D002281 1.0e-10 70.1 65 50.8
Psat1g164120 Pisum sativum HOM05D000776 ORTHO05D002281 1.0e-10 70.1 69 50.7
TPR.G8010 Trifolium pratense HOM05D000776 ORTHO05D002281 1.0e-10 70.1 69 50.7
ClCG01G025410 Citrullus lanatus HOM05D000776 ORTHO05D002281 1.3e-10 69.7 61 52.5
MELO3C007043.2 Cucumis melo HOM05D000776 ORTHO05D002281 1.3e-10 69.7 61 52.5
SalBow8G3389 Salvia bowleyana HOM05D000776 ORTHO05D002281 1.3e-10 69.7 69 49.3
THA.LOC104814338 Tarenaya hassleriana HOM05D000776 ORTHO05D002281 1.3e-10 69.7 69 52.2
Prupe.4G101700 Prunus persica HOM05D000776 ORTHO05D002281 1.7e-10 69.3 64 54.7
BcaB07g32702 Brassica carinata HOM05D000776 ORTHO05D002281 2.3e-10 68.9 69 52.2
Ciclev10015404m.g Citrus clementina HOM05D000776 ORTHO05D002281 2.3e-10 68.9 64 51.6
CsaV3_1G037730 Cucumis sativus L. HOM05D000776 ORTHO05D002281 2.3e-10 68.9 61 54.1
FvH4_3g11380 Fragaria vesca HOM05D000776 ORTHO05D002281 2.3e-10 68.9 64 51.6
FAN16G1384 Fragaria x ananassa HOM05D000776 ORTHO05D002281 2.3e-10 68.9 64 51.6
FAN25G0598 Fragaria x ananassa HOM05D000776 ORTHO05D002281 2.3e-10 68.9 64 51.6
RcHm_v2.0_Chr5g0018331 Rosa chinensis HOM05D000776 ORTHO05D002281 2.3e-10 68.9 62 56.5
BcaC05g27086 Brassica carinata HOM05D000776 ORTHO05D002281 2.9e-10 68.6 69 50.7
C05p29680 Brassica napus HOM05D000776 ORTHO05D002281 2.9e-10 68.6 69 50.7
BolC5t31697H Brassica oleracea HOM05D000776 ORTHO05D002281 2.9e-10 68.6 69 50.7
ClCG01G008860 Citrullus lanatus HOM05D000776 ORTHO05D002281 2.9e-10 68.6 61 54.1
Lalb_Chr12g0204371 Lupinus albus HOM05D000776 ORTHO05D002281 2.9e-10 68.6 64 53.1
MD05G1263800 Malus domestica HOM05D000776 ORTHO05D002281 2.9e-10 68.6 64 54.7
Nitab4.5_0001219g0050 Nicotiana tabacum HOM05D000776 ORTHO05D002281 2.9e-10 68.6 69 49.3
Nitab4.5_0006230g0010 Nicotiana tabacum HOM05D000776 ORTHO05D002281 2.9e-10 68.6 69 49.3
SGA_v2.0_scaffold223G42889 Striga asiatica HOM05D000776 ORTHO05D002281 2.9e-10 68.6 69 47.8
CsaV3_6G052660 Cucumis sativus L. HOM05D000776 ORTHO05D002281 3.8e-10 68.2 61 52.5
Glyma.15G136000 Glycine max HOM05D000776 ORTHO05D002281 3.8e-10 68.2 64 51.6
Phvul.006G122600 Phaseolus vulgaris HOM05D000776 ORTHO05D002281 3.8e-10 68.2 64 51.6
Sed0009509 Sechium edule HOM05D000776 ORTHO05D002281 3.8e-10 68.2 61 52.5
Actinidia32351 Actinidia chinensis HOM05D000776 ORTHO05D002281 5.0e-10 67.8 69 50.7
Aa31LG9G8710 Aethionema arabicum HOM05D000776 ORTHO05D002281 5.0e-10 67.8 65 53.8
A09p35790 Brassica napus HOM05D000776 ORTHO05D002281 5.0e-10 67.8 69 50.7
BraA09t39102Z Brassica rapa HOM05D000776 ORTHO05D002281 5.0e-10 67.8 69 50.7
FAN21G1354 Fragaria x ananassa HOM05D000776 ORTHO05D002281 5.0e-10 67.8 64 50.0
QL05p064849 Quercus lobata HOM05D000776 ORTHO05D002281 6.6e-10 67.4 65 50.8
Ca_00930_v3 Cicer arietinum L. HOM05D000776 ORTHO05D002281 8.6e-10 67.0 69 49.3
Glyma.09G030300 Glycine max HOM05D000776 ORTHO05D002281 8.6e-10 67.0 69 49.3
MSTRG.16320 Avicennia marina HOM05D000776 ORTHO05D002281 1.1e-09 66.6 65 47.7
CANSAT35G0967 Cannabis sativa HOM05D000776 ORTHO05D002281 1.1e-09 66.6 64 50.0
Sed0007552 Sechium edule HOM05D000776 ORTHO05D002281 1.1e-09 66.6 64 50.0
Carub.0001s2888 Capsella rubella HOM05D000776 ORTHO05D002281 1.5e-09 66.2 70 51.4
Cpa.g.sc285.6 Carica papaya HOM05D000776 ORTHO05D002281 1.5e-09 66.2 65 52.3
Sed0014226 Sechium edule HOM05D000776 ORTHO05D002281 1.5e-09 66.2 61 49.2
PGSC0003DMG401021138 Solanum tuberosum HOM05D000776 ORTHO05D002281 1.5e-09 66.2 69 46.4
vmacro10992 Vaccinium macrocarpon HOM05D000776 ORTHO05D002281 1.5e-09 66.2 69 49.3
Gohir.A10G005700 Gossypium hirsutum HOM05D000776 ORTHO05D002281 1.9e-09 65.9 64 53.1
Hund17652 Selenicereus undatus HOM05D000776 ORTHO05D002281 1.9e-09 65.9 75 45.3
Thhalv10000899m.g Eutrema salsugineum HOM05D000776 ORTHO05D002281 2.5e-09 65.5 64 57.8
GSVIVG01021749001 Vitis vinifera HOM05D000776 ORTHO05D002281 2.5e-09 65.5 69 49.3
CARHR030100 Cardamine hirsuta HOM05D000776 ORTHO05D002281 3.3e-09 65.1 64 50.0
Lalb_Chr18g0058371 Lupinus albus HOM05D000776 ORTHO05D002281 3.3e-09 65.1 69 46.4
Manes.14G126800 Manihot esculenta HOM05D000776 ORTHO05D002281 3.3e-09 65.1 64 51.6
Sp2g09290 Schrenkiella parvula HOM05D000776 ORTHO05D002281 3.3e-09 65.1 64 56.2
Ah.02g115910 Amaranthus hybridus HOM05D000776 ORTHO05D002281 4.3e-09 64.7 63 46.0
THA.LOC104812693 Tarenaya hassleriana HOM05D000776 ORTHO05D002281 4.3e-09 64.7 72 45.8
Actinidia29250 Actinidia chinensis HOM05D000776 ORTHO05D002281 5.6e-09 64.3 65 49.2
AUR62038456 Chenopodium quinoa HOM05D000776 ORTHO05D002281 5.6e-09 64.3 66 45.5
Duzib235G0712 Durio zibethinus HOM05D000776 ORTHO05D002281 5.6e-09 64.3 64 48.4
Gohir.D10G005700 Gossypium hirsutum HOM05D000776 ORTHO05D002281 5.6e-09 64.3 64 53.1
Gorai.011G006300 Gossypium raimondii HOM05D000776 ORTHO05D002281 5.6e-09 64.3 64 53.1
Thecc.06G007800 Theobroma cacao HOM05D000776 ORTHO05D002281 5.6e-09 64.3 64 50.0
Ah.12g061630 Amaranthus hybridus HOM05D000776 ORTHO05D002281 7.3e-09 63.9 65 47.7
arahy.Tifrunner.gnm1.ann1.H36ZD0 Arachis hypogaea HOM05D000776 ORTHO05D002281 7.3e-09 63.9 64 48.4
EL10Ac5g11706 Beta vulgaris HOM05D000776 ORTHO05D002281 7.3e-09 63.9 65 47.7
HanXRQChr01g0005501 Helianthus annuus HOM05D000776 ORTHO05D002281 7.3e-09 63.9 64 48.4
Lsat_1_v5_gn_1_86980 Lactuca sativa HOM05D000776 ORTHO05D002281 7.3e-09 63.9 65 49.2
TWI38G1948 Tripterygium wilfordii HOM05D000776 ORTHO05D002281 7.3e-09 63.9 64 48.4
TWI63G0590 Tripterygium wilfordii HOM05D000776 ORTHO05D002281 7.3e-09 63.9 64 48.4
TAR627G0166 Trochodendron aralioides HOM05D000776 ORTHO05D002281 7.3e-09 63.9 69 49.3
MD10G1241500 Malus domestica HOM05D000776 ORTHO05D002281 9.5e-09 63.5 64 50.0
Peaxi162Scf00267g01019 Petunia axillaris HOM05D000776 ORTHO05D002281 9.5e-09 63.5 69 47.8
Solyc02g069580.3 Solanum lycopersicum HOM05D000776 ORTHO05D002281 9.5e-09 63.5 69 44.9
arahy.Tifrunner.gnm1.ann1.SPE1H9 Arachis hypogaea HOM05D000776 ORTHO05D002281 1.2e-08 63.2 64 48.4
DCAR_000830 Daucus carota HOM05D000776 ORTHO05D002281 1.2e-08 63.2 65 46.2
Manes.06G054100 Manihot esculenta HOM05D000776 ORTHO05D002281 1.2e-08 63.2 64 50.0
Nn7g37767 Nelumbo nucifera HOM05D000776 ORTHO05D002281 1.6e-08 62.8 69 49.3
Duzib160G0798 Durio zibethinus HOM05D000776 ORTHO05D002281 2.1e-08 62.4 70 48.6
Duzib192G0040 Durio zibethinus HOM05D000776 ORTHO05D002281 2.1e-08 62.4 64 48.4
Eucgr.D01025 Eucalyptus grandis HOM05D000776 ORTHO05D002281 2.1e-08 62.4 66 42.4
Gohir.A06G181600 Gossypium hirsutum HOM05D000776 ORTHO05D002281 2.1e-08 62.4 64 46.9
Gohir.D06G188300 Gossypium hirsutum HOM05D000776 ORTHO05D002281 2.1e-08 62.4 64 46.9
Gorai.010G220700 Gossypium raimondii HOM05D000776 ORTHO05D002281 2.1e-08 62.4 64 46.9
Cfa000763 Carpinus fangiana HOM05D000776 ORTHO05D002281 2.8e-08 62.0 69 46.4
Sopen02g018710 Solanum pennellii HOM05D000776 ORTHO05D002281 2.8e-08 62.0 69 43.5
Lj4g0017613 Lotus japonicus HOM05D000776 ORTHO05D002281 3.6e-08 61.6 69 46.4
Medtr8g089180 Medicago truncatula HOM05D000776 ORTHO05D002281 3.6e-08 61.6 69 43.5
CAN.G675.29 Capsicum annuum HOM05D000776 ORTHO05D002281 4.7e-08 61.2 69 42.0
Glyma.05G170300 Glycine max HOM05D000776 ORTHO05D002281 4.7e-08 61.2 69 44.9
AUR62042154 Chenopodium quinoa HOM05D000776 ORTHO05D002281 6.1e-08 60.8 64 45.3
PGR083G2804 Punica granatum HOM05D000776 ORTHO05D002281 6.1e-08 60.8 67 50.7
Sc05g0005700 Simmondsia chinensis HOM05D000776 ORTHO05D002281 6.1e-08 60.8 69 44.9
TPR.G6276 Trifolium pratense HOM05D000776 ORTHO05D002281 6.1e-08 60.8 62 45.2
AL4G30860 Arabidopsis lyrata HOM05D000776 ORTHO05D002281 8.0e-08 60.5 68 42.6
A06p47150 Brassica napus HOM05D000776 ORTHO05D002281 8.0e-08 60.5 64 50.0
BraA06t27587Z Brassica rapa HOM05D000776 ORTHO05D002281 8.0e-08 60.5 64 50.0
Ca_17813_v3 Cicer arietinum L. HOM05D000776 ORTHO05D002281 8.0e-08 60.5 61 47.5
Gohir.D06G122100 Gossypium hirsutum HOM05D000776 ORTHO05D002281 8.0e-08 60.5 64 46.9
CiPaw.09G148300 Carya illinoinensis HOM05D000776 ORTHO05D002281 1.0e-07 60.1 70 40.0
Gorai.010G142300 Gossypium raimondii HOM05D000776 ORTHO05D002281 1.0e-07 60.1 64 46.9
Aa31LG6G11860 Aethionema arabicum HOM05D000776 ORTHO05D002281 1.4e-07 59.7 72 45.8
Carub.0004s1653 Capsella rubella HOM05D000776 ORTHO05D002281 1.4e-07 59.7 68 42.6
unitig_32.g10879 Utricularia gibba HOM05D000776 ORTHO05D002281 1.4e-07 59.7 68 42.6
arahy.Tifrunner.gnm1.ann1.B6KQ5X Arachis hypogaea HOM05D000776 ORTHO05D002281 1.8e-07 59.3 60 51.7
arahy.Tifrunner.gnm1.ann1.X036C8 Arachis hypogaea HOM05D000776 ORTHO05D002281 1.8e-07 59.3 60 51.7
BcaC04g21827 Brassica carinata HOM05D000776 ORTHO05D002281 1.8e-07 59.3 64 48.4
C09p26970 Brassica napus HOM05D000776 ORTHO05D002281 1.8e-07 59.3 64 48.4
CARHR178600 Cardamine hirsuta HOM05D000776 ORTHO05D002281 1.8e-07 59.3 64 48.4
MELO3C021813.2 Cucumis melo HOM05D000776 ORTHO05D002281 1.8e-07 59.3 41 61.0
Gohir.A06G118300 Gossypium hirsutum HOM05D000776 ORTHO05D002281 1.8e-07 59.3 59 49.2
HanXRQChr04g0119241 Helianthus annuus HOM05D000776 ORTHO05D002281 1.8e-07 59.3 67 38.8
Rhsim13G0126000 Rhododendron simsii HOM05D000776 ORTHO05D002281 1.8e-07 59.3 63 49.2
RhsimUnG0100500 Rhododendron simsii HOM05D000776 ORTHO05D002281 1.8e-07 59.3 63 49.2
unitig_748.g8276 Utricularia gibba HOM05D000776 ORTHO05D002281 1.8e-07 59.3 63 41.3
Lj1A1156G45 Lonicera japonica HOM05D000776 ORTHO05D002281 3.0e-07 58.5 44 54.5
Glyma.08G128500 Glycine max HOM05D000776 ORTHO05D002281 4.0e-07 58.2 64 45.3
BcaB02g09503 Brassica carinata HOM05D000776 ORTHO05D002281 5.2e-07 57.8 69 44.9
BcaB07g30943 Brassica carinata HOM05D000776 ORTHO05D002281 5.2e-07 57.8 64 46.9
BcaC06g34546 Brassica carinata HOM05D000776 ORTHO05D002281 5.2e-07 57.8 64 48.4
C07p27330 Brassica napus HOM05D000776 ORTHO05D002281 5.2e-07 57.8 64 48.4
BolC7t43264H Brassica oleracea HOM05D000776 ORTHO05D002281 5.2e-07 57.8 64 48.4
Sp4g17130 Schrenkiella parvula HOM05D000776 ORTHO05D002281 5.2e-07 57.8 69 42.0
A05p10820 Brassica napus HOM05D000776 ORTHO05D002281 6.8e-07 57.4 69 43.5
BraA05t20026Z Brassica rapa HOM05D000776 ORTHO05D002281 6.8e-07 57.4 69 43.5
Lj2C337T4 Lonicera japonica HOM05D000776 ORTHO05D002281 8.9e-07 57.0 57 43.9
Lalb_Chr20g0120291 Lupinus albus HOM05D000776 ORTHO05D002281 8.9e-07 57.0 69 43.5
Nitab4.5_0000265g0070 Nicotiana tabacum HOM05D000776 ORTHO05D002281 8.9e-07 57.0 44 54.5
BcaC02g11568 Brassica carinata HOM05D000776 ORTHO05D002281 1.2e-06 56.6 69 43.5
DCAR_007808 Daucus carota HOM05D000776 ORTHO05D002281 1.2e-06 56.6 50 48.0
Nitab4.5_0005176g0080 Nicotiana tabacum HOM05D000776 ORTHO05D027426 1.2e-06 56.6 63 38.1
Nitab4.5_0003301g0020 Nicotiana tabacum HOM05D000776 ORTHO05D002281 1.5e-06 56.2 48 54.2
Rhsim02G0165700 Rhododendron simsii HOM05D000776 ORTHO05D002281 1.5e-06 56.2 43 55.8
Atru.chr10.665 Acer truncatum HOM05D000776 ORTHO05D002281 2.0e-06 55.8 67 41.8
C04p13920 Brassica napus HOM05D000776 ORTHO05D002281 2.6e-06 55.5 69 43.5
Sopen02g009550 Solanum pennellii HOM05D000776 ORTHO05D002281 2.6e-06 55.5 44 52.3
BcaC06g31612 Brassica carinata HOM05D000776 ORTHO05D002281 3.4e-06 55.1 64 46.9
Phvul.002G251100 Phaseolus vulgaris HOM05D000776 ORTHO05D002281 3.4e-06 55.1 59 45.8
COL.COLO4_26891 Corchorus olitorius HOM05D000776 ORTHO05D002281 4.4e-06 54.7 44 52.3
Haze_05956 Corylus avellana HOM05D000776 ORTHO05D002281 4.4e-06 54.7 62 45.2
Nitab4.5_0001895g0050 Nicotiana tabacum HOM05D000776 ORTHO05D027426 4.4e-06 54.7 66 37.9
Actinidia31377 Actinidia chinensis HOM05D000776 ORTHO05D054759 5.7e-06 54.3 48 52.1
Aqoxy3G04099 Aquilegia oxysepala HOM05D000776 ORTHO05D002281 5.7e-06 54.3 65 43.1
AL8G15380 Arabidopsis lyrata HOM05D000776 ORTHO05D002281 5.7e-06 54.3 64 45.3
A09p21150 Brassica napus HOM05D000776 ORTHO05D002281 5.7e-06 54.3 64 43.8
Carub.0008s0402 Capsella rubella HOM05D000776 ORTHO05D002281 5.7e-06 54.3 64 48.4
ECA236G0969 Erigeron canadensis HOM05D000776 ORTHO05D002281 5.7e-06 54.3 68 41.2
Nitab4.5_0000142g0160 Nicotiana tabacum HOM05D000776 ORTHO05D027426 7.5e-06 53.9 51 47.1
PGSC0003DMG400031399 Solanum tuberosum HOM05D000776 ORTHO05D002281 7.5e-06 53.9 48 50.0
GSVIVG01015720001 Vitis vinifera HOM05D000776 ORTHO05D002281 9.8e-06 53.5 65 41.5


User provided reference genes

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